BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781096|ref|YP_003065509.1|
UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
asiaticus str. psy62]
(474 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 474
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHK 60
MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHK
Sbjct: 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHK 60
Query: 61 VENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTT 120
VENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTT
Sbjct: 61 VENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTT 120
Query: 121 TTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVV 180
TTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVV
Sbjct: 121 TTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVV 180
Query: 181 TNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR 240
TNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR
Sbjct: 181 TNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR 240
Query: 241 HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK 300
HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK
Sbjct: 241 HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK 300
Query: 301 LGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKII 360
LGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKII
Sbjct: 301 LGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKII 360
Query: 361 AIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQ 420
AIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQ
Sbjct: 361 AIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQ 420
Query: 421 AYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELVTPQNVCMM 474
AYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELVTPQNVCMM
Sbjct: 421 AYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELELVTPQNVCMM 474
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 47.8 bits (112), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 141/335 (42%), Gaps = 42/335 (12%)
Query: 11 HFVGIGGIGMSGI--AEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAE 68
H + + G+G SG+ A L ++G V D H +K + +E ID E
Sbjct: 9 HSIAVFGLGRSGLSAACALKDSGVHVIAWDD---------HPCAVKQAKDMGIEVIDFRE 59
Query: 69 I-------LVLS--TAIDKDNVE-CIA-ARERNIPIIFRSEMLAGLMRCRK----SISVS 113
I LVLS A+ +N C+ A + N+ II E+ R I+V+
Sbjct: 60 IPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVT 119
Query: 114 GTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR-IGTSEWIVVEADESDGTFI- 171
GT+GK++T +LI+ +L + +D + GG I N + + V+E
Sbjct: 120 GTNGKSSTVALISHVLRKNGYDVQL--GGNIGLPILNLEYFSPNRFYVIECSSYQIELTP 177
Query: 172 RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQ 231
+ I V+ NI P+HLD + K + A++C++ + IA
Sbjct: 178 TIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIV---TMSKHAIICINDHQCEK-IAYDM 233
Query: 232 NRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNA 291
N + H + I +++ S I + ++ + T + VI D S +HNI N
Sbjct: 234 N-----FIGHSISRISSQSLQSDSDLYIDESFLKCSATSE--VIFDFSQE-TKKHNIQNL 285
Query: 292 CASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVG 326
S V +LGL E++K+ L S G+ R +
Sbjct: 286 VTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIA 320
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 472
Score = 42.4 bits (98), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 25/275 (9%)
Query: 100 LAGLMRCRKSI-SVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYG---TNARIGT 155
+A +R + +I +++G+ GKTTT ++ L K I G N G T AR+
Sbjct: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV 158
Query: 156 S-EWIVVEADESDGTFIRLPSDIV-----VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIP 209
++ + E S IR + +V V+T I P HL + I +A + + +
Sbjct: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
Query: 210 FYGFAVVCMDHPEVRSLIAR---IQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQG 266
G + D L A+ + + I ++G+ AD + ++ S +S +V +QG
Sbjct: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
Query: 267 NVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASF---SGIKRRFT 323
K + V+ IG H N ++ + L + K L+ F G +R+
Sbjct: 279 ---KSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
Query: 324 LVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPR 357
+ D+ Y +P + + ++ + QI P
Sbjct: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
Score = 23.1 bits (48), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 275 IKDLSLPLIGEHNISNACASIAVAYKL-----------GLSSEDVKKGLA-SFSGIKRRF 322
I LS+P+ G ++ A +AVA +L + K+ L + S IK+ +
Sbjct: 78 IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
Query: 323 TLVGVWND 330
+G +N+
Sbjct: 138 ACIGSYNN 145
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 27.3 bits (59), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 205 IDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQ-ADIRYSNIRKYSGRSIFDVS 263
+DNIPF +++ ++AR +N +T HP + + + YS S
Sbjct: 94 VDNIPFLYQSIIG-------EIVARCRN---LTMAVHPVFTKDKNCDWQLYSPESC---- 139
Query: 264 VQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFT 323
G K +++I+ L + E I I + +L L S+D ++ LAS +++ F
Sbjct: 140 --GIAQKQISLIQIHCLKITPEEAIEIKKQLIFIIEQLKLVSQDSREMLASLEKMQKSFC 197
Query: 324 -LVGV 327
L G+
Sbjct: 198 HLTGI 202
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 12 FVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIG 58
+G G+G S +A++L+ G I G +++++ K+ ++ +IG
Sbjct: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIG 434
>gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 273
Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 406 SPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451
+PE ++NI+ + A +DS ++ E DF++ FG N
Sbjct: 16 TPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMEN 61
>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 133
Score = 25.0 bits (53), Expect = 2.7, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 332 HVFDDYGHHPIEISSVLAAVRQICPRKII 360
H+F+D+G E +SV A R+ C ++++
Sbjct: 19 HLFNDFGFMVFEATSVCEA-REFCEKELL 46
>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 25.0 bits (53), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 213 FAVVCMDHPEVRSLIARIQNRKIITYGRHPQ 243
F+V C ++ +V L+AR NR I + H Q
Sbjct: 202 FSVPCAEY-QVNPLLARAMNRIFILHADHEQ 231
>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 28/189 (14%)
Query: 280 LPLIGEHNISNACASIAVAYKLG--LSSEDVKKGLASFSGIKR--RFTLVGVWNDV---- 331
L L+GEH NA +I G L E + L S R + T + N +
Sbjct: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHS 293
Query: 332 HVFDDYGHHPIEISSVLAAVRQICPRK---------IIAIHQPHRYSRLSTLFDQFSSCF 382
V+ D GH+P ++ L ++I K +I + + +Y R F + S
Sbjct: 294 EVWIDGGHNP---NAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPI- 349
Query: 383 GDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAE--P 440
++ +S + E++ + L++ K G QA S +S++ I E P
Sbjct: 350 ----VLSVSLICRGRERQSISITPKVLMQEAKKLGF-QAMACSSMIEALSRVRKINEELP 404
Query: 441 GDFIIFFGA 449
I+ G+
Sbjct: 405 PPLILIAGS 413
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,154
Number of Sequences: 1233
Number of extensions: 13651
Number of successful extensions: 52
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 12
length of query: 474
length of database: 328,796
effective HSP length: 77
effective length of query: 397
effective length of database: 233,855
effective search space: 92840435
effective search space used: 92840435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)