HHsearch alignment for GI: 254781097 and conserved domain: COG0859
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].
Probab=98.00 E-value=0.002 Score=43.49 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=116.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEE--EEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 7699987885256207999999999659839--99957237676244468751687525656533123321110001211
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAV--YLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAF 82 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (369)
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~--vi~~~~~~~~---------~~~~~~ 70 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDK--VIIIDKKKKG---------LGLKER 70 (334)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCHHE--EEECCCCCCC---------HHHHHH
T ss_conf 07999955740137769999999998789977999955431467755952416--8511211212---------138999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE-C-CCCCCHHHHHHHH--------HHHHHHHCCCCCCCCC
Q ss_conf 0135554203444243126532102478886234110122-1-5320015677889--------9999874134322223
Q gi|254781097|r 83 IASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVH-E-QNVIMGKANRLLS--------WGVQIIARGLVSSQKK 152 (369)
Q Consensus 83 ~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP~vih-E-qN~v~G~~nk~l~--------~~a~~v~~~~~~~~~~ 152 (369)
T Consensus 71 ~~l~~~lr~~~yD~vidl~~~--~ksa~l~~~~~~~~r~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (334)
T COG0859 71 LALLRTLRKERYDAVIDLQGL--LKSALLALLLGIPFRIGFDKKSARELLLNKFYPRLDKPEGQHVVERYLALLEDLGLY 148 (334)
T ss_pred HHHHHHHCCCCCCEEEECHHH--HHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999998314686789974025--889999997389836314507777777763024456540245999999998760798
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC--CCEEEEEEC-CCCC-CCHH-HHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 55667325304443245654333443311447--814898630-4322-2102-33344544323202466067762025
Q gi|254781097|r 153 VLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQ--PFHLLVFGG-SQGA-KVFS-DIVPKSIALIPEMQRKRLVIMQQVRE 227 (369)
Q Consensus 153 ~~~~k~~~~G~PvR~~~~~~~~~~~~~~~~~~--~~~ILv~GG-S~Ga-~~ln-~~v~~~~~~l~~~~~~~~~v~~~~g~ 227 (369)
T Consensus 149 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~---~~Vvl~g~~ 217 (334)
T COG0859 149 PPPEPQLDFPLPR--------PPIELAKNLAKFDRPYIVINPGASRGSAKRWPLEHYAELAELLIAKG---YQVVLFGGP 217 (334)
T ss_pred CCCCCCCCCCCCC--------CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC---CEEEEEECH
T ss_conf 7667755545554--------78889865420379879996473466778899999999999999769---989994087
Q ss_pred CCHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHCCCEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 5167765322100111134544--445144430044899725420233345529604875
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACF--FKDIERYIVEANLLICRSGALTVSEIAVIGRPAILV 285 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f--~~~m~~~~~~aDlvIsraG~~Ti~E~~~~g~P~IlI 285 (369)
T Consensus 218 ~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~D-Sg~~HlAaA~~~P~I~i 276 (334)
T COG0859 218 DEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGND-SGPMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECCC-CHHHHHHHHCCCCEEEE
T ss_conf 899999999973676612179999999999996698999148-87999998739988999