HHsearch alignment for GI: 254781097 and conserved domain: COG1519
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane].
Probab=99.31 E-value=5.4e-08 Score=75.38 Aligned_cols=320 Identities=15% Similarity=0.164 Sum_probs=175.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEE--EEEE-CHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 7699987885256207999999999659839--9995-723767624446875168752565653312332111000121
Q gi|254781097|r 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAV--YLIT-DRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKA 81 (369)
Q Consensus 5 ~~ili~~gGTGGHi~palala~~L~~~g~~v--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (369)
T Consensus 50 p~vWiHaaSV-GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~-YlP~------D----------~ 111 (419)
T COG1519 50 PLVWIHAASV-GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQ-YLPL------D----------L 111 (419)
T ss_pred CEEEEEECCH-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEE-ECCC------C----------C
T ss_conf 8079996446-6788889999999976899878999527637999998769870899-6576------7----------6
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHCCCCCEEECCCCCCH-HH-HH--HHHHHHHHHHCCCCCC-------
Q ss_conf 1013555420344424312653210247-88862341101221532001-56-77--8899999874134322-------
Q gi|254781097|r 82 FIASLRLIKKLKPNVVVGFGGYHSISPL-LAGMILRIPSMVHEQNVIMG-KA-NR--LLSWGVQIIARGLVSS------- 149 (369)
Q Consensus 82 ~~~~~~ii~~~kPDvVi~tGGy~s~P~~-iaA~~l~iP~vihEqN~v~G-~~-nk--~l~~~a~~v~~~~~~~------- 149 (369)
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~EtE-lWPnli~e~~~~~~p~~Lv--NaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D 188 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIMETE-LWPNLINELKRRGIPLVLV--NARLSDRSFARYAKLKFLARLLFKNIDLILAQSEED 188 (419)
T ss_pred HHHHHHHHHHCCCCEEEEEECC-CCHHHHHHHHHCCCCEEEE--EEEECHHHHHHHHHHHHHHHHHHHHCCEEEECCHHH
T ss_conf 6889999974289879998001-3678999998769989999--423023257779877899999997423334548888
Q ss_pred CC---CCCCCCCEEEECCC---CHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 22---35566732530444---324565433344331144781489863043-222102333445443232024660677
Q gi|254781097|r 150 QK---KVLLRKIIVTGNPI---RSSLIKMKDIPYQSSDLDQPFHLLVFGGSQ-GAKVFSDIVPKSIALIPEMQRKRLVIM 222 (369)
Q Consensus 150 ~~---~~~~~k~~~~G~Pv---R~~~~~~~~~~~~~~~~~~~~~ILv~GGS~-Ga~~ln~~v~~~~~~l~~~~~~~~~v~ 222 (369)
T Consensus 189 ~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~GE---eei~l~~~~~l~~~~-~~~llI 264 (419)
T COG1519 189 AQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEGE---EEIILDAHQALKKQF-PNLLLI 264 (419)
T ss_pred HHHHHHCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCH---HHHHHHHHHHHHHHC-CCCEEE
T ss_conf 9999964986138633324237787324899999998508888559995477863---889999999999638-995699
Q ss_pred EEECCCCHHHHHH---HHHHCCCCCC---------------CCCCCCCCHHHHHCCCEEEE------CCCCHHHHHHHHH
Q ss_conf 6202551677653---2210011113---------------45444451444300448997------2542023334552
Q gi|254781097|r 223 QQVREDDKEKVQK---QYDELGCKAT---------------LACFFKDIERYIVEANLLIC------RSGALTVSEIAVI 278 (369)
Q Consensus 223 ~~~g~~~~~~~~~---~~~~~~~~~~---------------v~~f~~~m~~~~~~aDlvIs------raG~~Ti~E~~~~ 278 (369)
T Consensus 265 lV--PRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~L-Epa~~ 341 (419)
T COG1519 265 LV--PRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPL-EPAAF 341 (419)
T ss_pred EE--CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCHH-HHHHC
T ss_conf 91--5875567999999997598188613789998888689996286899997343279987744677898822-37870
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--HHHHHHHH
Q ss_conf 9604875335524898999899999889889980001998999999999861899999999999852783--27999999
Q gi|254781097|r 279 GRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKP--QAVLMLSD 356 (369)
Q Consensus 279 g~P~IlIP~p~a~~~hQ~~NA~~l~~~G~a~~i~~~~~~~~~l~~~i~~ll~d~~~l~~m~~~~~~~~~~--~aa~~i~~ 356 (369)
T Consensus 342 ~~pvi~Gp~~~---N-f~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~ 413 (419)
T COG1519 342 GTPVIFGPYTF---N-FSDIAERLLQAGAGLQVED----ADLLAKAVELLLADEDKREAYGRAGLEFLAQNRGALARTLE 413 (419)
T ss_pred CCCEEECCCCC---C-HHHHHHHHHHCCCEEEECC----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89788777513---5-8999999986698699778----89999999997078899999999899999986779999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781097|r 357 LVEK 360 (369)
Q Consensus 357 ~i~~ 360 (369)
T Consensus 414 ~l~~ 417 (419)
T COG1519 414 ALKP 417 (419)
T ss_pred HHHH
T ss_conf 7551