HHsearch alignment for GI: 254781097 and conserved domain: COG3660

>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane].
Probab=98.30  E-value=9.7e-05  Score=52.64  Aligned_cols=273  Identities=14%  Similarity=0.145  Sum_probs=125.5

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf             99987885256207999999999659839999572376762444687516875256565331233211100012110135
Q gi|254781097|r    7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASL   86 (369)
Q Consensus         7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   86 (369)
T Consensus         4 ~aisD~Rt-Gnt~QaiaLa~~l~r~eyttk~l~~----~~l~~lP~~w---l~~yp~~------~~~~l~----~~~--~   63 (329)
T COG3660           4 WAISDGRT-GNTHQAIALAEQLTRSEYTTKLLEY----NNLAKLPNFW---LAYYPIH------ILRELF----GPR--L   63 (329)
T ss_pred             EEEECCCC-CCHHHHHHHHHHHHCCCEEEEEEEC----CCCCCCCHHH---HHCCCCH------HHHHHH----CCC--C
T ss_conf             89615877-6389999999986046437899512----2001274466---5127627------678763----670--0


Q ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHH--HCCCCCEEECCC-CCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCC-EE
Q ss_conf             554203444243126532102478886--234110122153-20015677889999987413432222--3556673-25
Q gi|254781097|r   87 RLIKKLKPNVVVGFGGYHSISPLLAGM--ILRIPSMVHEQN-VIMGKANRLLSWGVQIIARGLVSSQK--KVLLRKI-IV  160 (369)
Q Consensus        87 ~ii~~~kPDvVi~tGGy~s~P~~iaA~--~l~iP~vihEqN-~v~G~~nk~l~~~a~~v~~~~~~~~~--~~~~~k~-~~  160 (369)
T Consensus        64 ~r~p~~~Pdl~I~aG-rrta~l~~~lkk~~~~-~~vVqI~~Prlp~-------~~fDlvivp~HD~~~~~s~~~~Nilpi  134 (329)
T COG3660          64 SRKPEQRPDLIITAG-RRTAPLAFYLKKKFGG-IKVVQIQDPRLPY-------NHFDLVIVPYHDWREELSDQGPNILPI  134 (329)
T ss_pred             CCCCCCCCCEEEECC-CCHHHHHHHHHHHCCC-CEEEEEECCCCCC-------CCCEEEECCCHHHHHHHHCCCCCEEEC
T ss_conf             017557985588615-2100789999986189-5389950799985-------302178426024666531157845542


Q ss_pred             EEC--CCCHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCHHHHHHH----HHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf             304--44324565433344331-14478148986304322210233344----544323202466067762025516776
Q gi|254781097|r  161 TGN--PIRSSLIKMKDIPYQSS-DLDQPFHLLVFGGSQGAKVFSDIVPK----SIALIPEMQRKRLVIMQQVREDDKEKV  233 (369)
Q Consensus       161 ~G~--PvR~~~~~~~~~~~~~~-~~~~~~~ILv~GGS~Ga~~ln~~v~~----~~~~l~~~~~~~~~v~~~~g~~~~~~~  233 (369)
T Consensus       135 ~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~--~g~~~lisfSRRTp~~~  212 (329)
T COG3660         135 NGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN--QGGSFLISFSRRTPDTV  212 (329)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHH
T ss_conf             6887756577756458887863778774499996678877766778999999999999874--78518999606891789


Q ss_pred             HHHHHH----CCCCC---CCCCCCCCCHHHHHCCCEEEECCCCHH-HHHHHHHCCCEEEEECC-CC-CCCHHHHHHHHHH
Q ss_conf             532210----01111---345444451444300448997254202-33345529604875335-52-4898999899999
Q gi|254781097|r  234 QKQYDE----LGCKA---TLACFFKDIERYIVEANLLICRSGALT-VSEIAVIGRPAILVPYP-HS-VDQDQLHNAYYLQ  303 (369)
Q Consensus       234 ~~~~~~----~~~~~---~v~~f~~~m~~~~~~aDlvIsraG~~T-i~E~~~~g~P~IlIP~p-~a-~~~hQ~~NA~~l~  303 (369)
T Consensus       213 ~s~l~~~l~s~~~i~w~~~d~g~N-PY~~~La~Adyii~TaDSinM~sEAasTgkP-v~~~~~~~~~s~K~r~F-i~~L~  289 (329)
T COG3660         213 KSILKNNLNSSPGIVWNNEDTGYN-PYIDMLAAADYIISTADSINMCSEAASTGKP-VFILEPPNFNSLKFRIF-IEQLV  289 (329)
T ss_pred             HHHHHHCCCCCCEEEECCCCCCCC-CHHHHHHHCCEEEEECCHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHH-HHHHH
T ss_conf             999971356684457379878988-1688885213378704301245787604997-59980698622778999-99998


Q ss_pred             HCCCEEEEEH
Q ss_conf             8898899800
Q gi|254781097|r  304 EGGGAKVITE  313 (369)
Q Consensus       304 ~~G~a~~i~~  313 (369)
T Consensus       290 eq~~AR~f~~  299 (329)
T COG3660         290 EQKIARPFEG  299 (329)
T ss_pred             HHHHCCCCCC
T ss_conf             7533152575