HHsearch alignment for GI: 254781097 and conserved domain: COG3660
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane].
Probab=98.30 E-value=9.7e-05 Score=52.64 Aligned_cols=273 Identities=14% Similarity=0.145 Sum_probs=125.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 99987885256207999999999659839999572376762444687516875256565331233211100012110135
Q gi|254781097|r 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIASL 86 (369)
Q Consensus 7 ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (369)
T Consensus 4 ~aisD~Rt-Gnt~QaiaLa~~l~r~eyttk~l~~----~~l~~lP~~w---l~~yp~~------~~~~l~----~~~--~ 63 (329)
T COG3660 4 WAISDGRT-GNTHQAIALAEQLTRSEYTTKLLEY----NNLAKLPNFW---LAYYPIH------ILRELF----GPR--L 63 (329)
T ss_pred EEEECCCC-CCHHHHHHHHHHHHCCCEEEEEEEC----CCCCCCCHHH---HHCCCCH------HHHHHH----CCC--C
T ss_conf 89615877-6389999999986046437899512----2001274466---5127627------678763----670--0
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHH--HCCCCCEEECCC-CCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCC-EE
Q ss_conf 554203444243126532102478886--234110122153-20015677889999987413432222--3556673-25
Q gi|254781097|r 87 RLIKKLKPNVVVGFGGYHSISPLLAGM--ILRIPSMVHEQN-VIMGKANRLLSWGVQIIARGLVSSQK--KVLLRKI-IV 160 (369)
Q Consensus 87 ~ii~~~kPDvVi~tGGy~s~P~~iaA~--~l~iP~vihEqN-~v~G~~nk~l~~~a~~v~~~~~~~~~--~~~~~k~-~~ 160 (369)
T Consensus 64 ~r~p~~~Pdl~I~aG-rrta~l~~~lkk~~~~-~~vVqI~~Prlp~-------~~fDlvivp~HD~~~~~s~~~~Nilpi 134 (329)
T COG3660 64 SRKPEQRPDLIITAG-RRTAPLAFYLKKKFGG-IKVVQIQDPRLPY-------NHFDLVIVPYHDWREELSDQGPNILPI 134 (329)
T ss_pred CCCCCCCCCEEEECC-CCHHHHHHHHHHHCCC-CEEEEEECCCCCC-------CCCEEEECCCHHHHHHHHCCCCCEEEC
T ss_conf 017557985588615-2100789999986189-5389950799985-------302178426024666531157845542
Q ss_pred EEC--CCCHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCHHHHHHH----HHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 304--44324565433344331-14478148986304322210233344----544323202466067762025516776
Q gi|254781097|r 161 TGN--PIRSSLIKMKDIPYQSS-DLDQPFHLLVFGGSQGAKVFSDIVPK----SIALIPEMQRKRLVIMQQVREDDKEKV 233 (369)
Q Consensus 161 ~G~--PvR~~~~~~~~~~~~~~-~~~~~~~ILv~GGS~Ga~~ln~~v~~----~~~~l~~~~~~~~~v~~~~g~~~~~~~ 233 (369)
T Consensus 135 ~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~--~g~~~lisfSRRTp~~~ 212 (329)
T COG3660 135 NGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN--QGGSFLISFSRRTPDTV 212 (329)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHH
T ss_conf 6887756577756458887863778774499996678877766778999999999999874--78518999606891789
Q ss_pred HHHHHH----CCCCC---CCCCCCCCCHHHHHCCCEEEECCCCHH-HHHHHHHCCCEEEEECC-CC-CCCHHHHHHHHHH
Q ss_conf 532210----01111---345444451444300448997254202-33345529604875335-52-4898999899999
Q gi|254781097|r 234 QKQYDE----LGCKA---TLACFFKDIERYIVEANLLICRSGALT-VSEIAVIGRPAILVPYP-HS-VDQDQLHNAYYLQ 303 (369)
Q Consensus 234 ~~~~~~----~~~~~---~v~~f~~~m~~~~~~aDlvIsraG~~T-i~E~~~~g~P~IlIP~p-~a-~~~hQ~~NA~~l~ 303 (369)
T Consensus 213 ~s~l~~~l~s~~~i~w~~~d~g~N-PY~~~La~Adyii~TaDSinM~sEAasTgkP-v~~~~~~~~~s~K~r~F-i~~L~ 289 (329)
T COG3660 213 KSILKNNLNSSPGIVWNNEDTGYN-PYIDMLAAADYIISTADSINMCSEAASTGKP-VFILEPPNFNSLKFRIF-IEQLV 289 (329)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCC-CHHHHHHHCCEEEEECCHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHH-HHHHH
T ss_conf 999971356684457379878988-1688885213378704301245787604997-59980698622778999-99998
Q ss_pred HCCCEEEEEH
Q ss_conf 8898899800
Q gi|254781097|r 304 EGGGAKVITE 313 (369)
Q Consensus 304 ~~G~a~~i~~ 313 (369)
T Consensus 290 eq~~AR~f~~ 299 (329)
T COG3660 290 EQKIARPFEG 299 (329)
T ss_pred HHHHCCCCCC
T ss_conf 7533152575