HHsearch alignment for GI: 254781097 and conserved domain: KOG3339
>KOG3339 consensus.
Probab=97.71 E-value=0.0001 Score=52.44 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=91.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEE-E--CHHHHH----HHCCCCC--CCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 699987885256207999999999659839999-5--723767----6244468--751687525656533123321110
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLI-T--DRRARS----FITDFPA--DSIYEIVSSQVRFSNPFVFWNSLV 76 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~-~--~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 76 (369)
T Consensus 40 ~~lVvlG-SGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipR---sReVgQS~ltSv~ 115 (211)
T KOG3339 40 STLVVLG-SGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARSFELSLAHCKAKNYEIPR---SREVGQSWLTSVF 115 (211)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHEECCH---HHHHHHHHHHHHH
T ss_conf 0899986-89768999999998875318537999658354289987331133336601134550---3564234540199
Q ss_pred HCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCC-----CEEECC-CC---CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 001211013555420344424312653210247888623411-----012215-32---001567788999998741343
Q gi|254781097|r 77 ILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIP-----SMVHEQ-NV---IMGKANRLLSWGVQIIARGLV 147 (369)
Q Consensus 77 ~~~~~~~~~~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l~iP-----~vihEq-N~---v~G~~nk~l~~~a~~v~~~~~ 147 (369)
T Consensus 116 Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~~~~~~IvyvES~cRV~tlSlsGkiL~~~~d~Fivqw~ 195 (211)
T KOG3339 116 TTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILGLKSSHIVYVESICRVKTLSLSGKILYPVVDLFIVQWP 195 (211)
T ss_pred HHHHHHHHHHEEEEECCCCEEEECCCCCEEHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCEEEHHHHHHHHHHHH
T ss_conf 99999997723789558878997799817389999999998476751899986345760455575050668889987429
Q ss_pred CCCCCCCCCCCEEEEC
Q ss_conf 2222355667325304
Q gi|254781097|r 148 SSQKKVLLRKIIVTGN 163 (369)
Q Consensus 148 ~~~~~~~~~k~~~~G~ 163 (369)
T Consensus 196 ~L~~ky~--~~~~~g~ 209 (211)
T KOG3339 196 ALATKYL--RVKYFGI 209 (211)
T ss_pred HHHHHCC--CCEEEEE
T ss_conf 9998523--5200133