HHsearch alignment for GI: 254781097 and conserved domain: TIGR00215
>TIGR00215 lpxB lipid-A-disaccharide synthase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process.
Probab=96.27 E-value=0.048 Score=33.77 Aligned_cols=271 Identities=19% Similarity=0.221 Sum_probs=135.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 69998788525620799999999965983999957237676244468751687525656533123321110001211013
Q gi|254781097|r 6 VILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWKAFIAS 85 (369)
Q Consensus 6 ~ili~~gGTGGHi~palala~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (369)
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~~~~~g~--~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~ 82 (393)
T TIGR00215 8 TIALVAGELSGDLL-GGGLRRQLPEHYPNARFVGLGGPRLAAEGC--ELLYD--PEELGVLGLTEVLGRLGPLLKIRKEL 82 (393)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCEEECCCHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23221200001467-889988645321220100023313454124--55520--35665543788887778888888899
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHC----CCCCEEEC-CCCCCHHHHHH----HHHHHHHHHCCCCCCCC--CCC
Q ss_conf 555420344424312653210247888623----41101221-53200156778----89999987413432222--355
Q gi|254781097|r 86 LRLIKKLKPNVVVGFGGYHSISPLLAGMIL----RIPSMVHE-QNVIMGKANRL----LSWGVQIIARGLVSSQK--KVL 154 (369)
Q Consensus 86 ~~ii~~~kPDvVi~tGGy~s~P~~iaA~~l----~iP~vihE-qN~v~G~~nk~----l~~~a~~v~~~~~~~~~--~~~ 154 (369)
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~w~w~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (393)
T TIGR00215 83 VQLLKQAPPDLLVGID-APDFNLTLANELKKKDPGLKTLYYVSPSVWAWRPTKWRAKKLGKATDLLLAFLPFEKGFYDKK 161 (393)
T ss_pred HHHHHHCCCEEEEECC-CCCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9875304630255403-467650123232200477514444333001025026788888887767765401034454420
Q ss_pred CCCCEEEECCCCHHHHHH-HHHH--HHHHCCCCC-CEEEEEECCCCCCC--HHHHHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf 667325304443245654-3334--433114478-14898630432221--023334454432320246606776-2025
Q gi|254781097|r 155 LRKIIVTGNPIRSSLIKM-KDIP--YQSSDLDQP-FHLLVFGGSQGAKV--FSDIVPKSIALIPEMQRKRLVIMQ-QVRE 227 (369)
Q Consensus 155 ~~k~~~~G~PvR~~~~~~-~~~~--~~~~~~~~~-~~ILv~GGS~Ga~~--ln~~v~~~~~~l~~~~~~~~~v~~-~~g~ 227 (369)
T Consensus 162 ~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 240 (393)
T TIGR00215 162 GLPCRFVGHPLLDAIPLEKPDRGSAREKLGIDHNGETLALLPGSRGSELEYLLPLFLKAAQLLEE-QLPDLKLLLPLPNK 240 (393)
T ss_pred CCCEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEEHHH
T ss_conf 67502204224544321033123345651688666368883064125788876887668888764-14752122220001
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHCCCEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 5167765322100111134544445144-43004489972542023334552960487
Q gi|254781097|r 228 DDKEKVQKQYDELGCKATLACFFKDIER-YIVEANLLICRSGALTVSEIAVIGRPAIL 284 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~v~~f~~~m~~-~~~~aDlvIsraG~~Ti~E~~~~g~P~Il 284 (369)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~p~~~ 297 (393)
T TIGR00215 241 KRGLQFERLKAEFGPDLTLHLLDGDARLTALVAADLALLASGTAAL-EAALLGTPFVL 297 (393)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHH-HHHHHCCCHHH
T ss_conf 2213578888863466313542242023456554345542122456-67663374110