RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
(369 letters)
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility..
Length = 350
Score = 341 bits (878), Expect = 2e-94
Identities = 129/352 (36%), Positives = 191/352 (54%), Gaps = 4/352 (1%)
Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPAD-SIYEIVSSQVRF 65
IL+ GGTGGH+FPA+AL+ EL+ RG V + +R A ++ I +R
Sbjct: 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRR 61
Query: 66 SNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQN 125
+ L K + + +++KK KP+VVVGFGGY S LA +L IP ++HEQN
Sbjct: 62 KGSLKKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN 121
Query: 126 VIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQP 185
+ G ANRLL+ +A + K K +VTGNP+R ++ + +
Sbjct: 122 AVPGLANRLLARFADRVALSFPETAKYFPKDKAVVTGNPVREEILALDRERARLGLRPGK 181
Query: 186 FHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKAT 245
LLVFGGSQGA+ ++ VP+ + E+ RKRL ++ Q + D E+V+K Y+ELG
Sbjct: 182 PTLLVFGGSQGARAINEAVPE---ALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYE 238
Query: 246 LACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEG 305
+ F D+ A+L+I R+GA TV+E+A +G PAIL+P P++ D Q NA L +
Sbjct: 239 VFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA 298
Query: 306 GGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDL 357
G A +I + L+PERLA L + P L MA+ +P A ++DL
Sbjct: 299 GAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLARPDAAERIADL 350
>gnl|CDD|31051 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 282 bits (722), Expect = 1e-76
Identities = 126/358 (35%), Positives = 199/358 (55%), Gaps = 7/358 (1%)
Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLI--TDRRARSFITDFPADSIYEIVSSQVR 64
I+L AGGTGGHVFPA+AL+ EL RG+ ++ T +F+ I S +R
Sbjct: 3 IVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLR 62
Query: 65 FSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQ 124
+ L K + + +++KKLKP+VV+G GGY S +A +L IP ++HEQ
Sbjct: 63 RKGSLKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ 122
Query: 125 NVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSSDLDQ 184
N + G AN++LS + +A + V ++VTG P+R ++ +
Sbjct: 123 NAVPGLANKILSKFAKKVASAFPKLEAGVKPENVVVTGIPVRPEFEELPAAEVRKDGRLD 182
Query: 185 PFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKA 244
+LV GGSQGAK +D+VP+++A + R+ ++ Q ++D E+++ Y+ELG
Sbjct: 183 KKTILVTGGSQGAKALNDLVPEALAKLAN----RIQVIHQTGKNDLEELKSAYNELG-VV 237
Query: 245 TLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQE 304
+ F D+ + A+L+I R+GALT++E+ +G PAILVPYP D Q +NA +L++
Sbjct: 238 RVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK 297
Query: 305 GGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLA 362
G A VI ++ L+PE+LAE + + P L MA+ GKP A ++DL+ LA
Sbjct: 298 AGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLLALA 355
>gnl|CDD|146634 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 110 bits (276), Expect = 8e-25
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 1/165 (0%)
Query: 187 HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATL 246
+ V GGSQGA+ + +V + L+ + ++ Q + D E V +Y + G +
Sbjct: 1 TIFVTGGSQGAQALNRLVLEVDPLLEL-KGIEYQVLHQTGKSDYEPVNCKYSKFGINVEV 59
Query: 247 ACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGG 306
F ++ YI A+L+I R+GA T++E+ +G+PAILVP P + + Q +NA L + G
Sbjct: 60 FPFIDNMAEYIKAADLVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAG 119
Query: 307 GAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAV 351
A V+ + L+PE+L E L + KP L +M K A+
Sbjct: 120 AALVLLQKELTPEKLVEALLKLLLKPLRLYEMNKAAKGSRLKDAI 164
>gnl|CDD|145923 pfam03033, Glyco_transf_28, Glycosyltransferase family 28
N-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). This N-terminal domain contains the acceptor
binding site and likely membrane association site. This
family also contains a large number of proteins that
probably have quite distinct activities.
Length = 136
Score = 106 bits (266), Expect = 1e-23
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFS 66
+LL GGT GHVFPAVAL+ L+ RG+ V L T F+ + + +
Sbjct: 1 VLLAGGGTRGHVFPAVALAWALRRRGHEVRLGTPPGLEEFVEEAGLP--FVPIGGDGLRR 58
Query: 67 NPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNV 126
+ +A + ++K+ KP++V+GFGGY ++ L+A + IP +VHEQN
Sbjct: 59 KSLKNLKEPLEGGRALRQAKEILKEFKPDLVIGFGGYVAVPALIAAPLAGIPLIVHEQNG 118
Query: 127 IMGKANRLLSW 137
I G N+LL W
Sbjct: 119 IPGLVNKLLPW 129
>gnl|CDD|32004 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 65.5 bits (159), Expect = 2e-11
Identities = 71/383 (18%), Positives = 126/383 (32%), Gaps = 72/383 (18%)
Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFIT----DFPADSIYEIVSSQ 62
IL V G GHV P +AL EL+ RG+ V + + + F+ F A I + +
Sbjct: 4 ILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELAT 63
Query: 63 VRFSNPFV--FWNSLVILWKAFIASLRLIKKLKPNVVVG-----------------FGGY 103
V F L K L L+++L+P++VV G
Sbjct: 64 EDGKFAGVKSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLGLAARLLGIPVVGIN 123
Query: 104 HSISPLLAGMILRIP----------SMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKV 153
+ L L +P + ++ SW +++ R + + +
Sbjct: 124 VAPYTPLPAAGLPLPPVGIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGL 183
Query: 154 L-LRKIIVTGNPIR-----SSLIKMKDIPYQSS-----------------DLDQPFHLLV 190
+R++ +G + +P+ D+P +
Sbjct: 184 PNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEAANELPYWIPADRPIVYVS 243
Query: 191 FGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFF 250
G A IV +++A + VI+ D + +A +
Sbjct: 244 LGTVGNAVELLAIVLEALADLDV-----RVIVSLGGARDTLV------NVPDNVIVADYV 292
Query: 251 KDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKV 310
+ A+ +I GA T SE G P +++P DQ NA ++E G
Sbjct: 293 P-QLELLPRADAVIHHGGAGTTSEALYAGVPLVVIPDGA----DQPLNAERVEELGAGIA 347
Query: 311 ITENFLSPERLAEELCSAMKKPS 333
+ L+ ERL + + S
Sbjct: 348 LPFEELTEERLRAAVNEVLADDS 370
>gnl|CDD|34289 COG4671, COG4671, Predicted glycosyl transferase [General function
prediction only].
Length = 400
Score = 58.0 bits (140), Expect = 4e-09
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 192 GGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKA------T 245
GG+ GA++ + + L+ + K L++ + Q +L A +
Sbjct: 228 GGADGAELIETAL-AAAQLLAGLNHKWLIVT------GPFMPEAQRQKLLASAPKRPHIS 280
Query: 246 LACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEG 305
+ F D E + A L++ G TV EI G+PA++VP ++QL A L+E
Sbjct: 281 IFEFRNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAP-REEQLIRAQRLEEL 339
Query: 306 GGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDL 357
G V+ L+P+ LA+ L +A+ +PS + ++G +L++L
Sbjct: 340 GLVDVLLPENLTPQNLADALKAALARPS---PSKPHLDLEGLEHIARILAEL 388
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea..
Length = 374
Score = 46.2 bits (110), Expect = 1e-05
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 23/179 (12%)
Query: 7 ILLVA-------GGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIV 59
ILLV GG HV L+ L RG+ V ++T + +
Sbjct: 2 ILLVTPEYPPSVGGAERHVL---ELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP 58
Query: 60 SSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPS 119
+R + + L RL+++ + +VV ++ LA +L IP
Sbjct: 59 PPLLRVRRLLLLLLLALRLR-------RLLRRERFDVVHAHDWLALLAAALAARLLGIPL 111
Query: 120 MVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLR--KIIVTGNPIRSSLIKMKDIP 176
++ + G+ L +++ +++ L R +II R L ++ +P
Sbjct: 112 VLTVHGLEFGRPGNELGLLLKLARA----LERRALRRADRIIAVSEATREELRELGGVP 166
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics..
Length = 401
Score = 45.4 bits (108), Expect = 2e-05
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 19/117 (16%)
Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFIT-----------DFPADSI 55
+L+ G+ G V P VAL+ L+ G+ V + T + D
Sbjct: 3 VLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLA 62
Query: 56 YEIVSSQVRFSNP----FVFWNSLVILWKAFIASLRLIKKLKPNVVVG----FGGYH 104
++ + P + + P++VV F G
Sbjct: 63 SPERNAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAV 119
Score = 34.3 bits (79), Expect = 0.062
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 268 GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQE-GGGAKVITENFLSPERLAEELC 326
GA T + G P ++VP+ DQ A + E G G + L+ ERLA L
Sbjct: 313 GAGTTAAALRAGVPQLVVPFFG----DQPFWAARVAELGAGPALDPRE-LTAERLAAALR 367
Query: 327 SAMKKPS---CLVQMAKQVSMKGKPQAVLMLSDLVEKL 361
+ PS + + G P A D++E+L
Sbjct: 368 RLLDPPSRRRAAALLRRIREEDGVPSAA----DVIERL 401
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
GT1 family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core..
Length = 353
Score = 45.0 bits (107), Expect = 3e-05
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 24/168 (14%)
Query: 21 AVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILWK 80
+ L++ L RGY V L+ R + E++ S V+ V +
Sbjct: 18 LLNLANGLDKRGYDVTLVVLRDEGDY---------LELLPSNVKLIPVRVLKLKSLRDLL 68
Query: 81 AFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQ 140
A + RL++K KP+VV+ L L +V E N + + R L +
Sbjct: 69 AILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLL 128
Query: 141 II-----ARGLVS-SQ--KKVLLR-------KIIVTGNPIRSSLIKMK 173
I A +V+ S+ K+ LL+ KI V NPI I+
Sbjct: 129 IRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRAL 176
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
GT1 family of glycosyltransferases.
UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
also known as 1,2-diacylglycerol 3-glucosyltransferase)
catalyzes the transfer of glucose from UDP-glucose to
1,2-diacylglycerol forming
3-D-glucosyl-1,2-diacylglycerol..
Length = 374
Score = 40.3 bits (95), Expect = 8e-04
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 14 TGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNPFVFWN 73
G L+ EL+ RG+ VY++ +P E V F P +
Sbjct: 13 VNGVATSIRRLAEELEKRGHEVYVVA--------PSYPGAPEEEEVVVVRPFRVPTFKYP 64
Query: 74 SLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMI-------LRIPSMVH 122
+ A + ++K+L P++V H+ +P G++ L IP +V
Sbjct: 65 DFRLPLPIPRALIIILKELGPDIV------HTHTPFSLGLLGLRVARKLGIP-VVA 113
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides..
Length = 359
Score = 36.8 bits (86), Expect = 0.010
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 25/123 (20%)
Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLIT-DRRARSFITDFPADSIYEIVSSQVRF 65
I+ V GG P L L+ GY V+++ + I + R
Sbjct: 5 IVTVDGGLYSFRLP---LIKALRAAGYEVHVVAPPGDELEELEALGVKVI--PIPLDRRG 59
Query: 66 SNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISP------LLAGMILRIPS 119
NPF +L+ L+ RL++K +P++V H+ +P LA + +P
Sbjct: 60 INPFKDLKALLRLY-------RLLRKERPDIV------HTHTPKPGILGRLAARLAGVPK 106
Query: 120 MVH 122
+++
Sbjct: 107 VIY 109
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis..
Length = 365
Score = 34.1 bits (79), Expect = 0.055
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 72 WNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHS-ISPLLAGMILRIPSMVH-------- 122
A + +LI++L+P+VV + YH+ + LA + +P ++
Sbjct: 59 KRPGRPDPGALLRLYKLIRRLRPDVVHTW-MYHADLYGGLAARLAGVPPVIWGIRHSDLD 117
Query: 123 ---EQNVIMGKANRLLSWGVQIIARGLVSSQK-KVLLRKIIVTGNPIR 166
+ ++ + RLLS + +I + +S + I I
Sbjct: 118 LGKKSTRLVARLRRLLSSFIPLI---VANSAAAAEYHQAIGYPPKKIV 162
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpE7 in
Sinorhizobium meliloti has been shown to be involved in
the biosynthesis of galactoglucans (exopolysaccharide
II)..
Length = 359
Score = 33.8 bits (78), Expect = 0.074
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 7 ILLVAGG-----TGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDF--PADSIYEIV 59
IL+V GG A L+ L RG+ V ++T +
Sbjct: 2 ILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPI 61
Query: 60 SSQVRFSNPFVFWNSLVILWKAFIASLR-LIKKLKPNVV 97
+R + P ++ A +A L++ +P+VV
Sbjct: 62 DEVLRSALPRDLFHLSDYDNPAVVAEFARLLEDFRPDVV 100
>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmSD in Erwinia
amylovora has been shown to be involved in the
biosynthesis of amylovoran, the acidic exopolysaccharide
acting as a virulence factor. This enzyme may be
responsible for the formation of galactose alpha-1,6
linkages in amylovoran..
Length = 348
Score = 32.9 bits (76), Expect = 0.14
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 21 AVALSHELKNRGYAVYLIT-DRRARSFITDFPADSIYEIVSSQVRFSNPFVFWNSLVILW 79
L++ L +G+ V +I+ D+ F YE+ +++ + +S ++
Sbjct: 19 LSNLANALAEKGHEVTIISLDKGEPPF---------YEL-DPKIKVIDLGDKRDSKLLAR 68
Query: 80 -KAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRI 117
K +L+K KP+VV+ F S+ LA + L+I
Sbjct: 69 FKKLRRLRKLLKNNKPDVVISFL--TSLLTFLASLGLKI 105
>gnl|CDD|36406 KOG1192, KOG1192, KOG1192, UDP-glucuronosyl and UDP-glucosyl
transferase [Carbohydrate transport and metabolism,
Energy production and conversion].
Length = 496
Score = 31.8 bits (71), Expect = 0.30
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 268 GALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCS 327
G + E G P + VP + DQ NA L GG V+ + L E L E +
Sbjct: 363 GWNSTLESIYSGVPMVCVP----LFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKE 418
Query: 328 AMKKPSCLVQMAKQVS--MKGKPQAVLMLSDLVEKLAHVK 365
++ + AK++S ++ +P + + VE +A
Sbjct: 419 ILENEE-YKEAAKRLSEILRDQPISPELAVKWVEFVARHG 457
>gnl|CDD|29380 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 31.7 bits (72), Expect = 0.37
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38
L + GT G V+PA L E K RG V I
Sbjct: 167 LFLVIGTSGVVYPAAGLPEEAKERGARVIEI 197
>gnl|CDD|38559 KOG3349, KOG3349, KOG3349, Predicted glycosyltransferase [General
function prediction only].
Length = 170
Score = 30.3 bits (68), Expect = 0.96
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 196 GAKVFSDIVPKSIALIPEMQR-------KRLVIM----QQVREDDKEKVQKQYDELGCKA 244
G F D++ S L E + +L+I Q D + ++K G
Sbjct: 11 GTTSFDDLI--SCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNG---GLTI 65
Query: 245 TLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYYLQE 304
F + I A+L+I +GA + E +G+P I+V +D QL A L E
Sbjct: 66 DGYDFSPSLTEDIRSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE 125
Query: 305 GG 306
G
Sbjct: 126 EG 127
>gnl|CDD|99814 cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron
transfer subunit of dihydroorotate dehydrogenase.
Dihydroorotate dehydrogenases (DHODs) catalyze the only
redox reaction in pyrimidine de novo biosynthesis. They
catalyze the oxidation of (S)-dihydroorotate to orotate
coupled with the reduction of NAD+. In L. lactis, DHOD B
(encoded by pyrDa) is co-expressed with pyrK and both
gene products are required for full activity, as well as
3 cofactors: FMN, FAD, and an [2Fe-2S] cluster..
Length = 246
Score = 29.8 bits (68), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38
+LLV GG G + P + L+ +L RG V ++
Sbjct: 101 VLLVGGGIG--IAPLLFLAKQLAERGIKVTVL 130
>gnl|CDD|146419 pfam03767, Acid_phosphat_B, HAD superfamily, subfamily IIIB (Acid
phosphatase). This family proteins includes acid
phosphatases and a number of vegetative storage
proteins.
Length = 230
Score = 29.7 bits (67), Expect = 1.5
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 20 PAVALSHELKNRGYAVYLITDRR 42
A+ L + L G ++ ++ R
Sbjct: 124 GALELYNYLVELGVKIFFVSGRS 146
>gnl|CDD|145534 pfam02441, Flavoprotein, Flavoprotein. This family contains
diverse flavoprotein enzymes. This family includes
epidermin biosynthesis protein, EpiD, which has been
shown to be a flavoprotein that binds FMN. This enzyme
catalyses the removal of two reducing equivalents from
the cysteine residue of the C-terminal meso-lanthionine
of epidermin to form a --C==C-- double bond. This
family also includes the B chain of dipicolinate
synthase a small polar molecule that accumulates to
high concentrations in bacterial endospores, and is
thought to play a role in spore heat resistance, or the
maintenance of heat resistance. dipicolinate synthase
catalyses the formation of dipicolinic acid from
dihydroxydipicolinic acid. This family also includes
phenylacrylic acid decarboxylase (EC:4.1.1.-).
Length = 118
Score = 28.6 bits (65), Expect = 2.9
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFP 51
++L + G A+ L ELK G V +I + A+ FIT
Sbjct: 2 KILLGITGS--SAAIKALRLLRELKKEGAEVRVILSKAAKKFITPET 46
>gnl|CDD|145003 pfam01630, Glyco_hydro_56, Hyaluronidase.
Length = 339
Score = 28.5 bits (64), Expect = 3.1
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 54 SIYEIVSSQ-VRFSNPFVFWNSLVILWKA-----------FIASLRLIKKLKPNVVVGFG 101
IY+ S + V+ +P W+ + KA +L+L K L+PN + G+
Sbjct: 126 DIYKKRSIELVQQQHPD--WDPTEVEQKAKRQFEKAARAFMEETLKLGKALRPNALWGYY 183
Query: 102 GY 103
+
Sbjct: 184 LF 185
>gnl|CDD|31187 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 28.3 bits (63), Expect = 3.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38
LL+ GT V+PA L K RG V I
Sbjct: 185 LLIVIGTSLKVYPAAGLPELAKRRGAKVIEI 215
>gnl|CDD|39169 KOG3966, KOG3966, KOG3966, p53-mediated apoptosis protein EI24/PIG8
[Signal transduction mechanisms, Defense mechanisms].
Length = 360
Score = 28.1 bits (62), Expect = 3.9
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 67 NPFVFWNSLVILWKAFIASLRLI------KKLKPNVVVGFGGYHSISPLLAGMILRIP 118
N W S ++ W+ I L L NVV +G H I LL G I +P
Sbjct: 97 NGGAMWISFLLFWQVCIPILGLFFSFFDGTDSGHNVV--WGWLHPILSLLFGYIWVLP 152
>gnl|CDD|31836 COG1650, COG1650, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 266
Score = 27.6 bits (61), Expect = 5.1
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 56 YEIVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYH 104
EI S++ +++ + IL +A +L + + VGFGG H
Sbjct: 147 VEIGSTEEEWTDD----EAGEILAEALEEALDNVDEGDFKAAVGFGGGH 191
>gnl|CDD|145647 pfam02608, Bmp, Basic membrane protein. This is a family of basic
membrane lipoproteins form Borrelia and various putative
lipoproteins form other bacteria. All of these proteins
are outer membrane proteins and are thus antigenic in
nature when possessed by the pathogenic members of the
family. One protein, Bacillus subtilis med, is a
transcriptional activator.
Length = 302
Score = 26.9 bits (60), Expect = 9.0
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAV-------YLITDRRARSFITDFPADSIYE 57
+VI AG TG V A EL GY + YL + S + + D++YE
Sbjct: 186 DVIYPAAGLTGIGVIQAA---KELGLYGYVIGVDQDQSYLAPENVITSSVKNV-DDAVYE 241
Query: 58 IVSSQVRFSNPFVFWNSLVILWKAFIASLRLIKKLKPNV 96
I+S + + V +I + ++ L N
Sbjct: 242 IIS---KVAKGTVLPGGGIITLGLKEGVVGFVELLDMNY 277
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.138 0.397
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,441,368
Number of extensions: 241511
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 34
Length of query: 369
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,210,882
Effective search space: 1153781668
Effective search space used: 1153781668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)