RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (369 letters)



>gnl|CDD|179100 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
           acetylglucosaminyltransferase; Provisional.
          Length = 357

 Score =  337 bits (866), Expect = 4e-93
 Identities = 142/366 (38%), Positives = 207/366 (56%), Gaps = 22/366 (6%)

Query: 7   ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR---ARSFITDFPADSI--YEIVSS 61
           ILL  GGTGGHVFPA+AL+ ELK RG+ V  +   R   AR      P   I  + I S 
Sbjct: 4   ILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLV----PKAGIEFHFIPSG 59

Query: 62  QVR----FSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRI 117
            +R     +N    +     L K  + + +++K+ KP+VVVGFGGY S    LA  +L I
Sbjct: 60  GLRRKGSLANLKAPFK----LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGI 115

Query: 118 PSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPY 177
           P ++HEQN + G AN+LL+   + +A     +  +    K +VTGNP+R  ++ +   P 
Sbjct: 116 PLVIHEQNAVPGLANKLLARFAKKVATAFPGAFPEFFKPKAVVTGNPVREEILALAAPPA 175

Query: 178 QSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQY 237
           + +  +    LLV GGSQGA+V ++ VP+++AL+PE     L ++ Q  + D E+V+  Y
Sbjct: 176 RLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPE----ALQVIHQTGKGDLEEVRAAY 231

Query: 238 DELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLH 297
              G  A +  F  D+      A+L+ICR+GA TV+E+A  G PAILVP PH+ D  Q  
Sbjct: 232 -AAGINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTA 290

Query: 298 NAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDL 357
           NA  L + G A +I ++ L+PE+LAE+L   +  P  L  MA+     GKP A   L+DL
Sbjct: 291 NARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADL 350

Query: 358 VEKLAH 363
           +E+LA 
Sbjct: 351 IEELAR 356


>gnl|CDD|162217 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
           beta-N-acetylglucosaminyltransferase.  RL J Bacteriol
           1993 Mar;175(6):1841-3.
          Length = 348

 Score =  268 bits (687), Expect = 2e-72
 Identities = 126/357 (35%), Positives = 194/357 (54%), Gaps = 16/357 (4%)

Query: 7   ILLVAGGTGGHVFPAVALSHELKNRGYAVYLI-TDRRARSFITDFPADSIYEIVSSQVRF 65
           ++L AGGTGGH+FPA+A++ EL  RG  V  + T R     +        Y I    +R 
Sbjct: 3   VVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRR 62

Query: 66  SNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQN 125
              F    + + L KA   + R++KK KP+ V+GFGGY S    LA  +L IP   HEQN
Sbjct: 63  KGSFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN 122

Query: 126 VIMGKANRLLSWGVQIIARGLVSSQKKVL-LRKIIVTGNPIRSSLIKMKDIPYQSSDL-- 182
            + G  N+LLS      A+ ++ S        + ++ GNP+R  +  +   P        
Sbjct: 123 AVPGLTNKLLSR----FAKKVLISFPGAKDHFEAVLVGNPVRQEIRSL---PVPRERFGL 175

Query: 183 -DQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG 241
            +    +LV GGSQGAK+ +++VPK++A + E   K + I+ Q  ++D EKV+  Y ELG
Sbjct: 176 REGKPTILVLGGSQGAKILNELVPKALAKLAE---KGIQIVHQTGKNDLEKVKNVYQELG 232

Query: 242 CKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYY 301
            +A +    +++      A+L+I R+GA TV+E+A  G PAIL+PYP++ D DQ +NA +
Sbjct: 233 IEAIVTFIDENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAAD-DQYYNAKF 291

Query: 302 LQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLV 358
           L++ G   VI +  L PE+L E L   +  P+ L  MA+      KP A   +++L+
Sbjct: 292 LEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKRIAELI 348


>gnl|CDD|171505 PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide
           beta-N-acetylglucosaminyltransferase; Reviewed.
          Length = 352

 Score = 96.9 bits (241), Expect = 8e-21
 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 37/331 (11%)

Query: 4   NNVILLVAGGTGGHVFPAVALSHELKNRGYAV-YLITDRRARSFITDFPADSIYEIVSSQ 62
              I+   GG+ GHV P +A+   LK   + + Y+ + +     I +      Y I S +
Sbjct: 1   MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGK 60

Query: 63  VR-------FSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMIL 115
           +R         +PF     LV+  K  + +   I+KLKP+V+   GG+ S+  ++ G + 
Sbjct: 61  LRRYFDLKNIKDPF-----LVM--KGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLN 113

Query: 116 RIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIK---M 172
           R+P ++HE ++  G AN++       I      + K +   K+I TG+P+R  ++K    
Sbjct: 114 RVPVLLHESDMTPGLANKIALRFASKIFVTFEEAAKHLPKEKVIYTGSPVREEVLKGNRE 173

Query: 173 KDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEK 232
           K + +      +P  + + GGS GAK  ++ V +++   PE+  K  ++    + +  + 
Sbjct: 174 KGLAFLGFSRKKPV-ITIMGGSLGAKKINETVREAL---PELLLKYQIVHLCGKGNLDDS 229

Query: 233 VQ-----KQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPY 287
           +Q     +Q++ +           ++   +   + +I R+G+  + E   + +P +L+P 
Sbjct: 230 LQNKEGYRQFEYVH---------GELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPL 280

Query: 288 PHSVDQ-DQLHNAYYLQEGGGAKVITENFLS 317
                + DQ+ NA   +  G A V+ E  ++
Sbjct: 281 SKFASRGDQILNAESFERQGYASVLYEEDVT 311


>gnl|CDD|178215 PLN02605, PLN02605, monogalactosyldiacylglycerol synthase.
          Length = 382

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 79/353 (22%), Positives = 132/353 (37%), Gaps = 97/353 (27%)

Query: 64  RFSNPFVFWNSLVILWKAFIA--SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV 121
             +NP +   S      AF+A    + + K KP+++V      S+ PL+  + LR+    
Sbjct: 69  HGTNPRLIHQSYFAATSAFVAREVAKGLMKYKPDIIV------SVHPLMQHVPLRVLRWQ 122

Query: 122 HEQ--------NVI--MGKANRLLSW---GV------------QIIARGLVSSQKKVLLR 156
            ++         V+  +G  +   +W   GV            + + RGL  SQ      
Sbjct: 123 GKELGKKIPFTTVVTDLGTCHP--TWFHKGVTRCFCPSEEVAKRALKRGLEPSQ------ 174

Query: 157 KIIVTGNPIRSSL---IKMKDIPYQSSDLDQPFHL---LVFGGSQGAKVFSDIVPKSIAL 210
            I V G PIR S    ++ KD      +L     L   L+ GG +G     +      AL
Sbjct: 175 -IRVYGLPIRPSFARAVRPKD--ELRRELGMDEDLPAVLLMGGGEGMGPLEETAR---AL 228

Query: 211 IPEMQRKRLV-IMQQV-----REDDKEKVQKQYDELGCKATLAC--FFKDIERYIVEANL 262
              +  K L   + QV     R    +K+Q + +    K  +    F  ++E ++   + 
Sbjct: 229 GDSLYDKNLGKPIGQVVVICGR---NKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDC 285

Query: 263 LICRSGALTVSEIAVIGRPAIL-----------VPYPHSVDQDQLHNAYYLQEGGGAKVI 311
           +I ++G  T++E  + G P IL           VPY   VD              G    
Sbjct: 286 IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPY--VVD-------------NGFGAF 330

Query: 312 TENFLSPERLAEELCSAMK-KPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAH 363
           +E   SP+ +A  +      K   L  M++      +P+AV    D+V  L  
Sbjct: 331 SE---SPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVF---DIVHDLHE 377


>gnl|CDD|161983 TIGR00661, MJ1255, conserved hypothetical protein.  This model
           represents nearly the full length of MJ1255 from
           Methanococcus jannaschii and of an unpublished protein
           from Vibrio cholerae, as well as the C-terminal half of
           a protein from Methanobacterium thermoautotrophicum. A
           small region (~50 amino acids) within the domain appears
           related to a family of sugar transferases.
          Length = 321

 Score = 36.8 bits (85), Expect = 0.010
 Identities = 62/330 (18%), Positives = 127/330 (38%), Gaps = 41/330 (12%)

Query: 7   ILLVAGGTG-GHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRF 65
           IL    G G GH   +VA+   LKN     Y+ +  R++++I+ +           +++ 
Sbjct: 2   ILYSVCGEGFGHTTRSVAIGEALKNDYEVSYIASG-RSKNYISKYGFKVFETFPGIKLKG 60

Query: 66  SNPFV-----FWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120
            +  V       N      KA    + +I++  P++++    Y ++   +A  +L+IP +
Sbjct: 61  EDGKVNIVKTLRNKEYSPKKAIRREINIIREYNPDLIISDFEYSTV---VAAKLLKIPVI 117

Query: 121 -VHEQNVIMGKAN-RLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIP-- 176
            +  QN         L+ +      R      ++ ++         I   +IK  + P  
Sbjct: 118 CISNQNYTRYPLKTDLIVYPTMAALRIFNERCERFIVPDYPFP-YTICPKIIKNMEGPLI 176

Query: 177 -YQSSDLDQPF--HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKV 233
            Y   D+D     ++LV+ G +          K + L+ ++   + V        +    
Sbjct: 177 RYDVDDVDNYGEDYILVYIGFEY-------RYKILELLGKIANVKFVCYSYEVAKN---- 225

Query: 234 QKQYDELGCKATLACFFK-DIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVD 292
              Y+E      +      + +  I  A L+I   G   +SE   +G+P I++P    + 
Sbjct: 226 --SYNE---NVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIP---DLG 277

Query: 293 Q-DQLHNAYYLQEGGGAKVITENFLSPERL 321
           Q +Q +NA  L++ G    +   +     L
Sbjct: 278 QFEQGNNAVKLEDLGCGIALE--YKELRLL 305


>gnl|CDD|177655 PLN00016, PLN00016, RNA-binding protein; Provisional.
          Length = 378

 Score = 33.1 bits (76), Expect = 0.11
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 2   SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIY-EIVS 60
            E   +L+V   +GGH F    L+ EL   G+ V L T  +  S        S + E+ S
Sbjct: 50  VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSS 109

Query: 61  SQVRF 65
           + V+ 
Sbjct: 110 AGVKT 114


>gnl|CDD|184179 PRK13608, PRK13608, diacylglycerol glucosyltransferase;
           Provisional.
          Length = 391

 Score = 32.8 bits (75), Expect = 0.15
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 26/217 (11%)

Query: 157 KIIVTGNPIRSSLIKMKD----IPYQSSDLDQPFHLLV---FGGSQG-AKVFSDIVPKSI 208
            + VTG PI +      D    +   + D D+   L+    FG S+G   + +DI+ KS 
Sbjct: 171 TVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILAKS- 229

Query: 209 ALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSG 268
                 Q   +V++    ++ K  +  ++        L  + K +  ++  + L+I + G
Sbjct: 230 ---ANAQ---VVMICGKSKELKRSLTAKFKSNENVLILG-YTKHMNEWMASSQLMITKPG 282

Query: 269 ALTVSEIAVIGRPAI-LVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCS 327
            +T+SE      P I L P P      +L NA Y +E G  K+      +PE   + + S
Sbjct: 283 GITISEGLARCIPMIFLNPAP----GQELENALYFEEKGFGKIAD----TPEEAIKIVAS 334

Query: 328 AMKKPSCLVQMAKQVSMKGKPQAVLMLS-DLVEKLAH 363
                  L  M   +       A   +  DL++ + H
Sbjct: 335 LTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGH 371


>gnl|CDD|162529 TIGR01777, yfcH, conserved hypothetical protein TIGR01777.  This
          model represents a clade of proteins of unknown
          function including the E. coli yfcH protein.
          Length = 292

 Score = 32.6 bits (75), Expect = 0.15
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 9  LVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44
          L+ GGTG   F   AL+  L   G+ V ++T R   
Sbjct: 2  LITGGTG---FIGRALTQRLTKDGHEVTILT-RSPP 33


>gnl|CDD|179043 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
          Length = 242

 Score = 32.5 bits (75), Expect = 0.17
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 8   LLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38
           L +  GT   V+PA  L +E +  G     I
Sbjct: 180 LFIVIGTSLVVYPAAGLPYEAREHGAKTVEI 210


>gnl|CDD|167023 PRK00676, hemA, glutamyl-tRNA reductase; Validated.
          Length = 338

 Score = 30.6 bits (69), Expect = 0.76
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 117 IPSMVHEQNVIMGKA--NRLLSWGVQIIARGLVSS-QKKVLLRKIIVTGNPIRSSLIKMK 173
           I S+V ++     K+    LL  G   I R +    Q++   R    +   +    +  +
Sbjct: 158 IESVVQQELRRRQKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL---TLPYR 214

Query: 174 DIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLV 220
            +  +      P+ ++ FG S+ A  F  +  +S+A IP     R+V
Sbjct: 215 TVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP----DRIV 257


>gnl|CDD|129807 TIGR00724, urea_amlyse_rel, biotin-dependent carboxylase
           uncharacterized domain.  Urea amidolyase of
           Saccharomyces cerevisiae is a 1835 amino acid protein
           with an amidase domain, a biotin/lipoyl cofactor
           attachment domain, a carbamoyl-phosphate synthase L
           chain-like domain, and uncharacterized regions. It has
           both urea carboxylase and allophanate hydrolase
           activities. This alignment models a domain that
           represents uncharacterized prokaryotic proteins of about
           300 amino acids, regions of prokaryotic urea carboxylase
           and of the urea carboxylase region of yeast urea
           amidolyase, and regions of other biotin-containing
           proteins.
          Length = 314

 Score = 30.1 bits (68), Expect = 0.90
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 96  VVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQI 141
           +    GGY    PL AG +L + S   + N   G   ++  W ++I
Sbjct: 133 LRANIGGYEG-RPLKAGDVLPLGSNELDLNEPQGLIPQIPEWRIEI 177


>gnl|CDD|178783 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional.
          Length = 303

 Score = 30.1 bits (68), Expect = 0.91
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)

Query: 199 VFSDIVPKSIALIPEMQRKRLVI-------MQQVREDDKEKVQKQYDEL 240
           +F+D VP  + +I ++Q K L I       +++V+E+  +K QK +  +
Sbjct: 109 LFNDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHV 157


>gnl|CDD|178184 PLN02572, PLN02572, UDP-sulfoquinovose synthase.
          Length = 442

 Score = 30.2 bits (68), Expect = 0.98
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 18/134 (13%)

Query: 9   LVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNP 68
           +V GG G   +   A +  L  RGY V ++ +   R F      DS+  I S   R    
Sbjct: 51  MVIGGDG---YCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRR- 106

Query: 69  FVFWNSL----VILWKAFIASLRL----IKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120
              W  +    + L+   I          K  +P+ VV FG   S +P    MI R  ++
Sbjct: 107 ---WKEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRS-APY--SMIDRSRAV 160

Query: 121 VHEQNVIMGKANRL 134
             + N ++G  N L
Sbjct: 161 FTQHNNVIGTLNVL 174


>gnl|CDD|149647 pfam08660, Alg14, Oligosaccharide biosynthesis protein Alg14
          like.  Alg14 is involved dolichol-linked
          oligosaccharide biosynthesis and anchors the catalytic
          subunit Alg13 to the ER membrane.
          Length = 166

 Score = 29.9 bits (68), Expect = 1.2
 Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 8  LLVAGGTGGH---VFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVR 64
          + V  G+GGH   +   +     L++    V   TD+ + S  + F       +   + R
Sbjct: 1  ICVVLGSGGHTAEMLRLLPFLKNLEDPRRYVVTETDKDSLSKASKFEKSRGGILKIPRAR 60

Query: 65 FSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVV 98
                +  S+    +  +++L+L+++ +P+V++
Sbjct: 61 EVG-QSYLRSIFTTLRNLLSALKLLRRERPDVIL 93


>gnl|CDD|161911 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine
          decarboxylase/phosphopantothenate--cysteine ligase,
          prokaryotic.  This model represents a bifunctional
          enzyme that catalyzes the second and third steps
          (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC
          4.1.1.36) in the biosynthesis of coenzyme A (CoA) from
          pantothenate in bacteria. In early descriptions of this
          flavoprotein, a ts mutation in one region of the
          protein appeared to cause a defect in DNA metaobolism
          rather than an increased need for the pantothenate
          precursor beta-alanine. This protein was then called
          dfp, for DNA/pantothenate metabolism flavoprotein. The
          authors responsible for detecting
          phosphopantothenate--cysteine ligase activity suggest
          renaming this bifunctional protein coaBC for its role
          in CoA biosynthesis. This enzyme contains the FMN
          cofactor, but no FAD or pyruvoyl group. The
          amino-terminal region contains the
          phosphopantothenoylcysteine decarboxylase activity.
          Length = 390

 Score = 28.9 bits (65), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 5  NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFIT 48
           ++L V GG     +  V L  EL  +G  V +I    A+ FIT
Sbjct: 5  KILLGVTGGIA--AYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46


>gnl|CDD|162353 TIGR01426, MGT, glycosyltransferase, MGT family.  This model
          describes the MGT (macroside glycosyltransferase)
          subfamily of the UDP-glucuronosyltransferase family.
          Members include a number of glucosyl transferases for
          macrolide antibiotic inactivation, but also include
          transferases of glucose-related sugars for macrolide
          antibiotic production.
          Length = 392

 Score = 28.9 bits (65), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 16 GHVFPAVALSHELKNRGYAV-YLITD 40
          GHV P + +  EL  RG+ V Y  T+
Sbjct: 7  GHVNPTLGVVEELVARGHRVTYATTE 32


>gnl|CDD|180014 PRK05322, PRK05322, galactokinase; Provisional.
          Length = 387

 Score = 27.5 bits (62), Expect = 5.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%)

Query: 15 GGHVFPAVALSHELKNRG-YAVY-LITDRRARSFITDFPADSIYEI 58
          GGHVFPA A++      G Y       D++ R +  +F    I E 
Sbjct: 39 GGHVFPA-AIT-----LGTYGAARKRDDKKVRLYSANFEDLGIIEF 78


>gnl|CDD|178828 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer
           subunit; Reviewed.
          Length = 250

 Score = 27.1 bits (61), Expect = 6.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 7   ILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38
           +LLV GG G  V P   L+ ELK +G  V  +
Sbjct: 105 VLLVGGGIG--VAPLYELAKELKKKGVEVTTV 134


>gnl|CDD|180924 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase;
          Validated.
          Length = 182

 Score = 27.2 bits (61), Expect = 6.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 5  NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITD 49
          N++L V+G      + A  L+ +L  RGY V ++  + A  FIT 
Sbjct: 3  NILLAVSGSIAA--YKAADLTSQLTKRGYQVTVLMTKAATKFITP 45


>gnl|CDD|184436 PRK13981, PRK13981, NAD synthetase; Provisional.
          Length = 540

 Score = 27.0 bits (61), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 279 GRPAILVPYPHSVDQDQLHNAYYLQEGG 306
           G PA+LV +P   +  +L+NA  L +GG
Sbjct: 75  GGPAVLVGHPW-REGGKLYNAAALLDGG 101


>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional.
          Length = 245

 Score = 27.0 bits (60), Expect = 7.7
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 306 GGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK--GKPQAV 351
           G    IT N ++P  +A  +   M  P  L  +  Q+ MK  G P+ +
Sbjct: 170 GARYGITVNCIAPGYIATPMVEQM-GPEVLQSIVNQIPMKRLGTPEEI 216


>gnl|CDD|162314 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate
           triphosphohydrolase, putative.  dGTP triphosphohydrolase
           (dgt) releases inorganic triphosphate, an unusual
           activity reaction product, from GTP. Its activity has
           been called limited to the Enterobacteriaceae, although
           homologous sequences are detected elsewhere. This
           finding casts doubt on whether the activity is shared in
           other species. In several of these other species, the
           homologous gene is found in an apparent operon with
           dnaG, the DNA primase gene. The enzyme from E. coli was
           shown to bind coopertatively to single stranded DNA. The
           biological role of dgt is unknown.
          Length = 381

 Score = 26.9 bits (60), Expect = 8.0
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 25/99 (25%)

Query: 174 DIPYQSSDLDQPFHL----------LVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQ 223
           DI Y   DL+    L          L+   +   ++ S++   SI+   E  R     + 
Sbjct: 197 DIAYTVHDLEDAIKLGLLTFDDLQHLLLIQAGFEELGSEMTDLSISAENEQIRSLRGKLI 256

Query: 224 QVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANL 262
                              ++     F      I+    
Sbjct: 257 ---------------TDLIESVAKAEFSSHLVAILIGTF 280


>gnl|CDD|180381 PRK06067, PRK06067, flagellar accessory protein FlaH; Validated.
          Length = 234

 Score = 26.9 bits (60), Expect = 9.8
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 139 VQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSSD 181
            Q    G +   KKV    +I T N  +S L +M+ +    SD
Sbjct: 42  SQQFVYGALKQGKKVY---VITTENTSKSYLKQMESVKIDISD 81


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,092,159
Number of extensions: 402955
Number of successful extensions: 826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 29
Length of query: 369
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 274
Effective length of database: 3,941,713
Effective search space: 1080029362
Effective search space used: 1080029362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)