RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus str. psy62] (369 letters) >gnl|CDD|179100 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional. Length = 357 Score = 337 bits (866), Expect = 4e-93 Identities = 142/366 (38%), Positives = 207/366 (56%), Gaps = 22/366 (6%) Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRR---ARSFITDFPADSI--YEIVSS 61 ILL GGTGGHVFPA+AL+ ELK RG+ V + R AR P I + I S Sbjct: 4 ILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLV----PKAGIEFHFIPSG 59 Query: 62 QVR----FSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRI 117 +R +N + L K + + +++K+ KP+VVVGFGGY S LA +L I Sbjct: 60 GLRRKGSLANLKAPFK----LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGI 115 Query: 118 PSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPY 177 P ++HEQN + G AN+LL+ + +A + + K +VTGNP+R ++ + P Sbjct: 116 PLVIHEQNAVPGLANKLLARFAKKVATAFPGAFPEFFKPKAVVTGNPVREEILALAAPPA 175 Query: 178 QSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQY 237 + + + LLV GGSQGA+V ++ VP+++AL+PE L ++ Q + D E+V+ Y Sbjct: 176 RLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPE----ALQVIHQTGKGDLEEVRAAY 231 Query: 238 DELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLH 297 G A + F D+ A+L+ICR+GA TV+E+A G PAILVP PH+ D Q Sbjct: 232 -AAGINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTA 290 Query: 298 NAYYLQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDL 357 NA L + G A +I ++ L+PE+LAE+L + P L MA+ GKP A L+DL Sbjct: 291 NARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADL 350 Query: 358 VEKLAH 363 +E+LA Sbjct: 351 IEELAR 356 >gnl|CDD|162217 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3. Length = 348 Score = 268 bits (687), Expect = 2e-72 Identities = 126/357 (35%), Positives = 194/357 (54%), Gaps = 16/357 (4%) Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLI-TDRRARSFITDFPADSIYEIVSSQVRF 65 ++L AGGTGGH+FPA+A++ EL RG V + T R + Y I +R Sbjct: 3 VVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRR 62 Query: 66 SNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMVHEQN 125 F + + L KA + R++KK KP+ V+GFGGY S LA +L IP HEQN Sbjct: 63 KGSFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN 122 Query: 126 VIMGKANRLLSWGVQIIARGLVSSQKKVL-LRKIIVTGNPIRSSLIKMKDIPYQSSDL-- 182 + G N+LLS A+ ++ S + ++ GNP+R + + P Sbjct: 123 AVPGLTNKLLSR----FAKKVLISFPGAKDHFEAVLVGNPVRQEIRSL---PVPRERFGL 175 Query: 183 -DQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKVQKQYDELG 241 + +LV GGSQGAK+ +++VPK++A + E K + I+ Q ++D EKV+ Y ELG Sbjct: 176 REGKPTILVLGGSQGAKILNELVPKALAKLAE---KGIQIVHQTGKNDLEKVKNVYQELG 232 Query: 242 CKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVDQDQLHNAYY 301 +A + +++ A+L+I R+GA TV+E+A G PAIL+PYP++ D DQ +NA + Sbjct: 233 IEAIVTFIDENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAAD-DQYYNAKF 291 Query: 302 LQEGGGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLMLSDLV 358 L++ G VI + L PE+L E L + P+ L MA+ KP A +++L+ Sbjct: 292 LEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKRIAELI 348 >gnl|CDD|171505 PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed. Length = 352 Score = 96.9 bits (241), Expect = 8e-21 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 37/331 (11%) Query: 4 NNVILLVAGGTGGHVFPAVALSHELKNRGYAV-YLITDRRARSFITDFPADSIYEIVSSQ 62 I+ GG+ GHV P +A+ LK + + Y+ + + I + Y I S + Sbjct: 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGK 60 Query: 63 VR-------FSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMIL 115 +R +PF LV+ K + + I+KLKP+V+ GG+ S+ ++ G + Sbjct: 61 LRRYFDLKNIKDPF-----LVM--KGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLN 113 Query: 116 RIPSMVHEQNVIMGKANRLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIK---M 172 R+P ++HE ++ G AN++ I + K + K+I TG+P+R ++K Sbjct: 114 RVPVLLHESDMTPGLANKIALRFASKIFVTFEEAAKHLPKEKVIYTGSPVREEVLKGNRE 173 Query: 173 KDIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEK 232 K + + +P + + GGS GAK ++ V +++ PE+ K ++ + + + Sbjct: 174 KGLAFLGFSRKKPV-ITIMGGSLGAKKINETVREAL---PELLLKYQIVHLCGKGNLDDS 229 Query: 233 VQ-----KQYDELGCKATLACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPAILVPY 287 +Q +Q++ + ++ + + +I R+G+ + E + +P +L+P Sbjct: 230 LQNKEGYRQFEYVH---------GELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPL 280 Query: 288 PHSVDQ-DQLHNAYYLQEGGGAKVITENFLS 317 + DQ+ NA + G A V+ E ++ Sbjct: 281 SKFASRGDQILNAESFERQGYASVLYEEDVT 311 >gnl|CDD|178215 PLN02605, PLN02605, monogalactosyldiacylglycerol synthase. Length = 382 Score = 38.0 bits (89), Expect = 0.004 Identities = 79/353 (22%), Positives = 132/353 (37%), Gaps = 97/353 (27%) Query: 64 RFSNPFVFWNSLVILWKAFIA--SLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSMV 121 +NP + S AF+A + + K KP+++V S+ PL+ + LR+ Sbjct: 69 HGTNPRLIHQSYFAATSAFVAREVAKGLMKYKPDIIV------SVHPLMQHVPLRVLRWQ 122 Query: 122 HEQ--------NVI--MGKANRLLSW---GV------------QIIARGLVSSQKKVLLR 156 ++ V+ +G + +W GV + + RGL SQ Sbjct: 123 GKELGKKIPFTTVVTDLGTCHP--TWFHKGVTRCFCPSEEVAKRALKRGLEPSQ------ 174 Query: 157 KIIVTGNPIRSSL---IKMKDIPYQSSDLDQPFHL---LVFGGSQGAKVFSDIVPKSIAL 210 I V G PIR S ++ KD +L L L+ GG +G + AL Sbjct: 175 -IRVYGLPIRPSFARAVRPKD--ELRRELGMDEDLPAVLLMGGGEGMGPLEETAR---AL 228 Query: 211 IPEMQRKRLV-IMQQV-----REDDKEKVQKQYDELGCKATLAC--FFKDIERYIVEANL 262 + K L + QV R +K+Q + + K + F ++E ++ + Sbjct: 229 GDSLYDKNLGKPIGQVVVICGR---NKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDC 285 Query: 263 LICRSGALTVSEIAVIGRPAIL-----------VPYPHSVDQDQLHNAYYLQEGGGAKVI 311 +I ++G T++E + G P IL VPY VD G Sbjct: 286 IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPY--VVD-------------NGFGAF 330 Query: 312 TENFLSPERLAEELCSAMK-KPSCLVQMAKQVSMKGKPQAVLMLSDLVEKLAH 363 +E SP+ +A + K L M++ +P+AV D+V L Sbjct: 331 SE---SPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVF---DIVHDLHE 377 >gnl|CDD|161983 TIGR00661, MJ1255, conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. Length = 321 Score = 36.8 bits (85), Expect = 0.010 Identities = 62/330 (18%), Positives = 127/330 (38%), Gaps = 41/330 (12%) Query: 7 ILLVAGGTG-GHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRF 65 IL G G GH +VA+ LKN Y+ + R++++I+ + +++ Sbjct: 2 ILYSVCGEGFGHTTRSVAIGEALKNDYEVSYIASG-RSKNYISKYGFKVFETFPGIKLKG 60 Query: 66 SNPFV-----FWNSLVILWKAFIASLRLIKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120 + V N KA + +I++ P++++ Y ++ +A +L+IP + Sbjct: 61 EDGKVNIVKTLRNKEYSPKKAIRREINIIREYNPDLIISDFEYSTV---VAAKLLKIPVI 117 Query: 121 -VHEQNVIMGKAN-RLLSWGVQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIP-- 176 + QN L+ + R ++ ++ I +IK + P Sbjct: 118 CISNQNYTRYPLKTDLIVYPTMAALRIFNERCERFIVPDYPFP-YTICPKIIKNMEGPLI 176 Query: 177 -YQSSDLDQPF--HLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQQVREDDKEKV 233 Y D+D ++LV+ G + K + L+ ++ + V + Sbjct: 177 RYDVDDVDNYGEDYILVYIGFEY-------RYKILELLGKIANVKFVCYSYEVAKN---- 225 Query: 234 QKQYDELGCKATLACFFK-DIERYIVEANLLICRSGALTVSEIAVIGRPAILVPYPHSVD 292 Y+E + + + I A L+I G +SE +G+P I++P + Sbjct: 226 --SYNE---NVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIP---DLG 277 Query: 293 Q-DQLHNAYYLQEGGGAKVITENFLSPERL 321 Q +Q +NA L++ G + + L Sbjct: 278 QFEQGNNAVKLEDLGCGIALE--YKELRLL 305 >gnl|CDD|177655 PLN00016, PLN00016, RNA-binding protein; Provisional. Length = 378 Score = 33.1 bits (76), Expect = 0.11 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 2 SENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIY-EIVS 60 E +L+V +GGH F L+ EL G+ V L T + S S + E+ S Sbjct: 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSS 109 Query: 61 SQVRF 65 + V+ Sbjct: 110 AGVKT 114 >gnl|CDD|184179 PRK13608, PRK13608, diacylglycerol glucosyltransferase; Provisional. Length = 391 Score = 32.8 bits (75), Expect = 0.15 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 26/217 (11%) Query: 157 KIIVTGNPIRSSLIKMKD----IPYQSSDLDQPFHLLV---FGGSQG-AKVFSDIVPKSI 208 + VTG PI + D + + D D+ L+ FG S+G + +DI+ KS Sbjct: 171 TVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILAKS- 229 Query: 209 ALIPEMQRKRLVIMQQVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANLLICRSG 268 Q +V++ ++ K + ++ L + K + ++ + L+I + G Sbjct: 230 ---ANAQ---VVMICGKSKELKRSLTAKFKSNENVLILG-YTKHMNEWMASSQLMITKPG 282 Query: 269 ALTVSEIAVIGRPAI-LVPYPHSVDQDQLHNAYYLQEGGGAKVITENFLSPERLAEELCS 327 +T+SE P I L P P +L NA Y +E G K+ +PE + + S Sbjct: 283 GITISEGLARCIPMIFLNPAP----GQELENALYFEEKGFGKIAD----TPEEAIKIVAS 334 Query: 328 AMKKPSCLVQMAKQVSMKGKPQAVLMLS-DLVEKLAH 363 L M + A + DL++ + H Sbjct: 335 LTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGH 371 >gnl|CDD|162529 TIGR01777, yfcH, conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein. Length = 292 Score = 32.6 bits (75), Expect = 0.15 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 9 LVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRAR 44 L+ GGTG F AL+ L G+ V ++T R Sbjct: 2 LITGGTG---FIGRALTQRLTKDGHEVTILT-RSPP 33 >gnl|CDD|179043 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional. Length = 242 Score = 32.5 bits (75), Expect = 0.17 Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 8 LLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 L + GT V+PA L +E + G I Sbjct: 180 LFIVIGTSLVVYPAAGLPYEAREHGAKTVEI 210 >gnl|CDD|167023 PRK00676, hemA, glutamyl-tRNA reductase; Validated. Length = 338 Score = 30.6 bits (69), Expect = 0.76 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Query: 117 IPSMVHEQNVIMGKA--NRLLSWGVQIIARGLVSS-QKKVLLRKIIVTGNPIRSSLIKMK 173 I S+V ++ K+ LL G I R + Q++ R + + + + Sbjct: 158 IESVVQQELRRRQKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL---TLPYR 214 Query: 174 DIPYQSSDLDQPFHLLVFGGSQGAKVFSDIVPKSIALIPEMQRKRLV 220 + + P+ ++ FG S+ A F + +S+A IP R+V Sbjct: 215 TVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP----DRIV 257 >gnl|CDD|129807 TIGR00724, urea_amlyse_rel, biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins. Length = 314 Score = 30.1 bits (68), Expect = 0.90 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 96 VVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQI 141 + GGY PL AG +L + S + N G ++ W ++I Sbjct: 133 LRANIGGYEG-RPLKAGDVLPLGSNELDLNEPQGLIPQIPEWRIEI 177 >gnl|CDD|178783 PLN03246, PLN03246, 26S proteasome regulatory subunit; Provisional. Length = 303 Score = 30.1 bits (68), Expect = 0.91 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%) Query: 199 VFSDIVPKSIALIPEMQRKRLVI-------MQQVREDDKEKVQKQYDEL 240 +F+D VP + +I ++Q K L I +++V+E+ +K QK + + Sbjct: 109 LFNDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHV 157 >gnl|CDD|178184 PLN02572, PLN02572, UDP-sulfoquinovose synthase. Length = 442 Score = 30.2 bits (68), Expect = 0.98 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 18/134 (13%) Query: 9 LVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVRFSNP 68 +V GG G + A + L RGY V ++ + R F DS+ I S R Sbjct: 51 MVIGGDG---YCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRR- 106 Query: 69 FVFWNSL----VILWKAFIASLRL----IKKLKPNVVVGFGGYHSISPLLAGMILRIPSM 120 W + + L+ I K +P+ VV FG S +P MI R ++ Sbjct: 107 ---WKEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRS-APY--SMIDRSRAV 160 Query: 121 VHEQNVIMGKANRL 134 + N ++G N L Sbjct: 161 FTQHNNVIGTLNVL 174 >gnl|CDD|149647 pfam08660, Alg14, Oligosaccharide biosynthesis protein Alg14 like. Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane. Length = 166 Score = 29.9 bits (68), Expect = 1.2 Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 8 LLVAGGTGGH---VFPAVALSHELKNRGYAVYLITDRRARSFITDFPADSIYEIVSSQVR 64 + V G+GGH + + L++ V TD+ + S + F + + R Sbjct: 1 ICVVLGSGGHTAEMLRLLPFLKNLEDPRRYVVTETDKDSLSKASKFEKSRGGILKIPRAR 60 Query: 65 FSNPFVFWNSLVILWKAFIASLRLIKKLKPNVVV 98 + S+ + +++L+L+++ +P+V++ Sbjct: 61 EVG-QSYLRSIFTTLRNLLSALKLLRRERPDVIL 93 >gnl|CDD|161911 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. Length = 390 Score = 28.9 bits (65), Expect = 2.2 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFIT 48 ++L V GG + V L EL +G V +I A+ FIT Sbjct: 5 KILLGVTGGIA--AYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 >gnl|CDD|162353 TIGR01426, MGT, glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. Length = 392 Score = 28.9 bits (65), Expect = 2.4 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 16 GHVFPAVALSHELKNRGYAV-YLITD 40 GHV P + + EL RG+ V Y T+ Sbjct: 7 GHVNPTLGVVEELVARGHRVTYATTE 32 >gnl|CDD|180014 PRK05322, PRK05322, galactokinase; Provisional. Length = 387 Score = 27.5 bits (62), Expect = 5.8 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%) Query: 15 GGHVFPAVALSHELKNRG-YAVY-LITDRRARSFITDFPADSIYEI 58 GGHVFPA A++ G Y D++ R + +F I E Sbjct: 39 GGHVFPA-AIT-----LGTYGAARKRDDKKVRLYSANFEDLGIIEF 78 >gnl|CDD|178828 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed. Length = 250 Score = 27.1 bits (61), Expect = 6.7 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 7 ILLVAGGTGGHVFPAVALSHELKNRGYAVYLI 38 +LLV GG G V P L+ ELK +G V + Sbjct: 105 VLLVGGGIG--VAPLYELAKELKKKGVEVTTV 134 >gnl|CDD|180924 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated. Length = 182 Score = 27.2 bits (61), Expect = 6.9 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 5 NVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFITD 49 N++L V+G + A L+ +L RGY V ++ + A FIT Sbjct: 3 NILLAVSGSIAA--YKAADLTSQLTKRGYQVTVLMTKAATKFITP 45 >gnl|CDD|184436 PRK13981, PRK13981, NAD synthetase; Provisional. Length = 540 Score = 27.0 bits (61), Expect = 7.5 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Query: 279 GRPAILVPYPHSVDQDQLHNAYYLQEGG 306 G PA+LV +P + +L+NA L +GG Sbjct: 75 GGPAVLVGHPW-REGGKLYNAAALLDGG 101 >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional. Length = 245 Score = 27.0 bits (60), Expect = 7.7 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 306 GGAKVITENFLSPERLAEELCSAMKKPSCLVQMAKQVSMK--GKPQAV 351 G IT N ++P +A + M P L + Q+ MK G P+ + Sbjct: 170 GARYGITVNCIAPGYIATPMVEQM-GPEVLQSIVNQIPMKRLGTPEEI 216 >gnl|CDD|162314 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown. Length = 381 Score = 26.9 bits (60), Expect = 8.0 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 25/99 (25%) Query: 174 DIPYQSSDLDQPFHL----------LVFGGSQGAKVFSDIVPKSIALIPEMQRKRLVIMQ 223 DI Y DL+ L L+ + ++ S++ SI+ E R + Sbjct: 197 DIAYTVHDLEDAIKLGLLTFDDLQHLLLIQAGFEELGSEMTDLSISAENEQIRSLRGKLI 256 Query: 224 QVREDDKEKVQKQYDELGCKATLACFFKDIERYIVEANL 262 ++ F I+ Sbjct: 257 ---------------TDLIESVAKAEFSSHLVAILIGTF 280 >gnl|CDD|180381 PRK06067, PRK06067, flagellar accessory protein FlaH; Validated. Length = 234 Score = 26.9 bits (60), Expect = 9.8 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Query: 139 VQIIARGLVSSQKKVLLRKIIVTGNPIRSSLIKMKDIPYQSSD 181 Q G + KKV +I T N +S L +M+ + SD Sbjct: 42 SQQFVYGALKQGKKVY---VITTENTSKSYLKQMESVKIDISD 81 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.138 0.397 Gapped Lambda K H 0.267 0.0637 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,092,159 Number of extensions: 402955 Number of successful extensions: 826 Number of sequences better than 10.0: 1 Number of HSP's gapped: 814 Number of HSP's successfully gapped: 29 Length of query: 369 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 274 Effective length of database: 3,941,713 Effective search space: 1080029362 Effective search space used: 1080029362 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.3 bits)