Query         gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 385
No_of_seqs    166 out of 4269
Neff          7.5 
Searched_HMMs 23785
Date          Wed Jun  1 00:51:09 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781098.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2knc_B Integrin beta-3; transm  34.9      18 0.00076   14.5   2.9   25  273-297    15-39  (79)
  2 1iru_C 20S proteasome; cell cy  30.7      17  0.0007   14.7   1.5   31  213-243     3-33  (261)
  3 2aze_A Transcription factor DP  25.9      12 0.00049   15.6   0.0   14  255-268   129-142 (155)
  4 1dny_A Non-ribosomal peptide s  24.3      26  0.0011   13.6   1.5   24  331-354    30-53  (91)
  5 1iru_A 20S proteasome; cell cy  16.7      39  0.0016   12.5   1.1   24  220-243    14-37  (246)
  6 2cg5_B Fatty acid synthase; tr  16.5      35  0.0015   12.8   0.8   34  323-356    15-50  (91)
  7 2klu_A T-cell surface glycopro  14.1      43  0.0018   12.2   0.8   33  336-368     8-40  (70)
  8 1yar_A Proteasome alpha subuni  13.0      51  0.0022   11.8   1.2   25  219-243    12-36  (233)
  9 2cq8_A 10-formyltetrahydrofola  13.0      31  0.0013   13.1  -0.2   31  326-356    37-67  (110)
 10 1ryp_A 20S proteasome; multica  12.3      54  0.0023   11.7   1.2   21  222-242    10-30  (243)

No 1  
>2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=34.93  E-value=18  Score=14.50  Aligned_cols=25  Identities=8%  Similarity=0.280  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3466567999999999999999998
Q gi|254781098|r  273 FGIIFCIFILCIFAFIVVRSFLYSL  297 (385)
Q Consensus       273 ~G~ig~~~ii~l~~~li~r~~~~a~  297 (385)
                      +|.+|+++++.+.++++++++..-.
T Consensus        15 lgvi~~IvliGl~~LliwKll~~i~   39 (79)
T 2knc_B           15 LSVMGAILLIGLAALLIWKLLITIH   39 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999778


No 2  
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=30.68  E-value=17  Score=14.73  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=22.9

Q ss_pred             HHCCCCCHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             1001210000447864101222222205740
Q gi|254781098|r  213 HVAIRINHFMTGVGDSFQIDSSRDAIIHGGW  243 (385)
Q Consensus       213 y~~~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG~  243 (385)
                      .+..|-.+-++|.|.=+|+..++.|+.+|+-
T Consensus         3 ~~yd~~~t~fsp~G~l~QvEyA~kav~~G~T   33 (261)
T 1iru_C            3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGT   33 (261)
T ss_dssp             TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCEEECCCCEEHHHHHHHHHHHCCCC
T ss_conf             6447997479999816499989999975887


No 3  
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=25.89  E-value=12  Score=15.65  Aligned_cols=14  Identities=14%  Similarity=0.460  Sum_probs=6.3

Q ss_pred             CCCCCCCCCCHHHH
Q ss_conf             55532100001888
Q gi|254781098|r  255 RVIPDSHTDFVFSV  268 (385)
Q Consensus       255 ~~lPe~~tDfIfa~  268 (385)
                      ..+|-+.-+|+=..
T Consensus       129 s~vP~~l~~yv~~~  142 (155)
T 2aze_A          129 SLVPKALEPYVTEM  142 (155)
T ss_dssp             HTSCGGGHHHHHHH
T ss_pred             HHCCCCHHHHHHHH
T ss_conf             77780278899998


No 4  
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=24.27  E-value=26  Score=13.57  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=18.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             577755854233958999999999
Q gi|254781098|r  331 PTKGMTMPAISYGGSSILGICITM  354 (385)
Q Consensus       331 P~tGi~LPFiSyGGssll~~~~~~  354 (385)
                      |..|..-+|+.+||.|+.+.-+.-
T Consensus        30 ~~i~~~~~Ff~lGgdSL~a~~l~~   53 (91)
T 1dny_A           30 SGIGILDNFFQIGGHSLKAMAVAA   53 (91)
T ss_dssp             SSCCSSCCTTSSCCSSHHHHHHHH
T ss_pred             CCCCCCCCHHHCCCCHHHHHHHHH
T ss_conf             988999897882895899999999


No 5  
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=16.73  E-value=39  Score=12.54  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=19.7

Q ss_pred             HHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             000447864101222222205740
Q gi|254781098|r  220 HFMTGVGDSFQIDSSRDAIIHGGW  243 (385)
Q Consensus       220 ~~ldp~~~gyQ~~qs~~Ai~sGG~  243 (385)
                      +-++|.|.-+|+..++.|+.+||-
T Consensus        14 t~fsp~Grl~QvEYa~kav~~gg~   37 (246)
T 1iru_A           14 TIFSPEGRLYQVEYAFKAINQGGL   37 (246)
T ss_dssp             SCCCTTSCCHHHHHHHHHHHTTCC
T ss_pred             CEECCCCEEHHHHHHHHHHHCCCC
T ss_conf             459999827399989999973893


No 6  
>2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase (complex), fatty acid biosynthesis, phosphopantetheine transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=16.52  E-value=35  Score=12.83  Aligned_cols=34  Identities=6%  Similarity=0.097  Sum_probs=23.1

Q ss_pred             HHHHCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9975067357--775585423395899999999999
Q gi|254781098|r  323 IGVNLHLLPT--KGMTMPAISYGGSSILGICITMGY  356 (385)
Q Consensus       323 i~~~~gl~P~--tGi~LPFiSyGGssll~~~~~~Gi  356 (385)
                      +.-++|+-+.  .+..-||+.+||.|+++.-+.--+
T Consensus        15 ~a~vLg~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l   50 (91)
T 2cg5_B           15 VAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTL   50 (91)
T ss_dssp             HHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHCCCCCCHHHHCCCHHHHHHHHHHH
T ss_conf             999918998767699988899577679999999999


No 7  
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=14.14  E-value=43  Score=12.24  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=22.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             585423395899999999999998650204776
Q gi|254781098|r  336 TMPAISYGGSSILGICITMGYLLALTCRRPEKR  368 (385)
Q Consensus       336 ~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~  368 (385)
                      +.-.+=-||+..+.....++|+-.+..+...++
T Consensus         8 ~~~~vVLGg~~~ll~ftglcI~~cvrc~hRrrr   40 (70)
T 2klu_A            8 SMALIVLGGVAGLLLFIGLGIFFSVRSRHRRRQ   40 (70)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred             CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             866767521899999999999731489888889


No 8  
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=13.03  E-value=51  Score=11.80  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             CHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             0000447864101222222205740
Q gi|254781098|r  219 NHFMTGVGDSFQIDSSRDAIIHGGW  243 (385)
Q Consensus       219 ~~~ldp~~~gyQ~~qs~~Ai~sGG~  243 (385)
                      .+-++|.|.=+|+..++.|+.+|+-
T Consensus        12 ~t~fsp~G~l~QvEya~kav~~G~t   36 (233)
T 1yar_A           12 ITVFSPDGRLFQVEYAREAVKKGST   36 (233)
T ss_dssp             -CCCCTTSCCHHHHHHHHHHTTSCC
T ss_pred             CCEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             7149999805699999999975876


No 9  
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.02  E-value=31  Score=13.09  Aligned_cols=31  Identities=10%  Similarity=-0.051  Sum_probs=22.3

Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             5067357775585423395899999999999
Q gi|254781098|r  326 NLHLLPTKGMTMPAISYGGSSILGICITMGY  356 (385)
Q Consensus       326 ~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi  356 (385)
                      ++|-.|-.+..=+|++.||.|+.+.-+.--+
T Consensus        37 vL~~~~~i~~~~~FF~lGGdSL~a~~l~~~i   67 (110)
T 2cq8_A           37 ILPKVLEVEDSTDFFKSGAASVDVVRLVEEV   67 (110)
T ss_dssp             HCSSCSCCCTTCBHHHHHCCTTHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH
T ss_conf             8389877899988787489699999999999


No 10 
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 1g0u_G 1fnt_A 1z7q_A 2zcy_G* ...
Probab=12.26  E-value=54  Score=11.66  Aligned_cols=21  Identities=14%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             CCCCCCCCHHHHHHHHHCCCC
Q ss_conf             044786410122222220574
Q gi|254781098|r  222 MTGVGDSFQIDSSRDAIIHGG  242 (385)
Q Consensus       222 ldp~~~gyQ~~qs~~Ai~sGG  242 (385)
                      ++|.|.=+|+..++.|+.+||
T Consensus        10 fsp~Grl~Q~EYa~~av~~~g   30 (243)
T 1ryp_A           10 FSPEGRLYQVEYAFKATNQTN   30 (243)
T ss_dssp             CCTTSCCHHHHHHHHHTTTTC
T ss_pred             ECCCCEEHHHHHHHHHHHCCC
T ss_conf             999975659998999987069


Done!