Query gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] Match_columns 385 No_of_seqs 166 out of 4269 Neff 7.5 Searched_HMMs 23785 Date Wed Jun 1 00:51:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781098.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2knc_B Integrin beta-3; transm 34.9 18 0.00076 14.5 2.9 25 273-297 15-39 (79) 2 1iru_C 20S proteasome; cell cy 30.7 17 0.0007 14.7 1.5 31 213-243 3-33 (261) 3 2aze_A Transcription factor DP 25.9 12 0.00049 15.6 0.0 14 255-268 129-142 (155) 4 1dny_A Non-ribosomal peptide s 24.3 26 0.0011 13.6 1.5 24 331-354 30-53 (91) 5 1iru_A 20S proteasome; cell cy 16.7 39 0.0016 12.5 1.1 24 220-243 14-37 (246) 6 2cg5_B Fatty acid synthase; tr 16.5 35 0.0015 12.8 0.8 34 323-356 15-50 (91) 7 2klu_A T-cell surface glycopro 14.1 43 0.0018 12.2 0.8 33 336-368 8-40 (70) 8 1yar_A Proteasome alpha subuni 13.0 51 0.0022 11.8 1.2 25 219-243 12-36 (233) 9 2cq8_A 10-formyltetrahydrofola 13.0 31 0.0013 13.1 -0.2 31 326-356 37-67 (110) 10 1ryp_A 20S proteasome; multica 12.3 54 0.0023 11.7 1.2 21 222-242 10-30 (243) No 1 >2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} Probab=34.93 E-value=18 Score=14.50 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3466567999999999999999998 Q gi|254781098|r 273 FGIIFCIFILCIFAFIVVRSFLYSL 297 (385) Q Consensus 273 ~G~ig~~~ii~l~~~li~r~~~~a~ 297 (385) +|.+|+++++.+.++++++++..-. T Consensus 15 lgvi~~IvliGl~~LliwKll~~i~ 39 (79) T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIH 39 (79) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999778 No 2 >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=30.68 E-value=17 Score=14.73 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=22.9 Q ss_pred HHCCCCCHHCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 1001210000447864101222222205740 Q gi|254781098|r 213 HVAIRINHFMTGVGDSFQIDSSRDAIIHGGW 243 (385) Q Consensus 213 y~~~Ri~~~ldp~~~gyQ~~qs~~Ai~sGG~ 243 (385) .+..|-.+-++|.|.=+|+..++.|+.+|+- T Consensus 3 ~~yd~~~t~fsp~G~l~QvEyA~kav~~G~T 33 (261) T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGT 33 (261) T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCC T ss_pred CCCCCCCEEECCCCEEHHHHHHHHHHHCCCC T ss_conf 6447997479999816499989999975887 No 3 >2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1 Probab=25.89 E-value=12 Score=15.65 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=6.3 Q ss_pred CCCCCCCCCCHHHH Q ss_conf 55532100001888 Q gi|254781098|r 255 RVIPDSHTDFVFSV 268 (385) Q Consensus 255 ~~lPe~~tDfIfa~ 268 (385) ..+|-+.-+|+=.. T Consensus 129 s~vP~~l~~yv~~~ 142 (155) T 2aze_A 129 SLVPKALEPYVTEM 142 (155) T ss_dssp HTSCGGGHHHHHHH T ss_pred HHCCCCHHHHHHHH T ss_conf 77780278899998 No 4 >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A Probab=24.27 E-value=26 Score=13.57 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=18.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 577755854233958999999999 Q gi|254781098|r 331 PTKGMTMPAISYGGSSILGICITM 354 (385) Q Consensus 331 P~tGi~LPFiSyGGssll~~~~~~ 354 (385) |..|..-+|+.+||.|+.+.-+.- T Consensus 30 ~~i~~~~~Ff~lGgdSL~a~~l~~ 53 (91) T 1dny_A 30 SGIGILDNFFQIGGHSLKAMAVAA 53 (91) T ss_dssp SSCCSSCCTTSSCCSSHHHHHHHH T ss_pred CCCCCCCCHHHCCCCHHHHHHHHH T ss_conf 988999897882895899999999 No 5 >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=16.73 E-value=39 Score=12.54 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.7 Q ss_pred HHCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 000447864101222222205740 Q gi|254781098|r 220 HFMTGVGDSFQIDSSRDAIIHGGW 243 (385) Q Consensus 220 ~~ldp~~~gyQ~~qs~~Ai~sGG~ 243 (385) +-++|.|.-+|+..++.|+.+||- T Consensus 14 t~fsp~Grl~QvEYa~kav~~gg~ 37 (246) T 1iru_A 14 TIFSPEGRLYQVEYAFKAINQGGL 37 (246) T ss_dssp SCCCTTSCCHHHHHHHHHHHTTCC T ss_pred CEECCCCEEHHHHHHHHHHHCCCC T ss_conf 459999827399989999973893 No 6 >2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase (complex), fatty acid biosynthesis, phosphopantetheine transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A Probab=16.52 E-value=35 Score=12.83 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=23.1 Q ss_pred HHHHCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9975067357--775585423395899999999999 Q gi|254781098|r 323 IGVNLHLLPT--KGMTMPAISYGGSSILGICITMGY 356 (385) Q Consensus 323 i~~~~gl~P~--tGi~LPFiSyGGssll~~~~~~Gi 356 (385) +.-++|+-+. .+..-||+.+||.|+++.-+.--+ T Consensus 15 ~a~vLg~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l 50 (91) T 2cg5_B 15 VAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTL 50 (91) T ss_dssp HHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHH T ss_pred HHHHHCCCCHHHCCCCCCHHHHCCCHHHHHHHHHHH T ss_conf 999918998767699988899577679999999999 No 7 >2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens} Probab=14.14 E-value=43 Score=12.24 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=22.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 585423395899999999999998650204776 Q gi|254781098|r 336 TMPAISYGGSSILGICITMGYLLALTCRRPEKR 368 (385) Q Consensus 336 ~LPFiSyGGssll~~~~~~Gi~l~i~~~~~~~~ 368 (385) +.-.+=-||+..+.....++|+-.+..+...++ T Consensus 8 ~~~~vVLGg~~~ll~ftglcI~~cvrc~hRrrr 40 (70) T 2klu_A 8 SMALIVLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70) T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSS T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 866767521899999999999731489888889 No 8 >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Probab=13.03 E-value=51 Score=11.80 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.0 Q ss_pred CHHCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 0000447864101222222205740 Q gi|254781098|r 219 NHFMTGVGDSFQIDSSRDAIIHGGW 243 (385) Q Consensus 219 ~~~ldp~~~gyQ~~qs~~Ai~sGG~ 243 (385) .+-++|.|.=+|+..++.|+.+|+- T Consensus 12 ~t~fsp~G~l~QvEya~kav~~G~t 36 (233) T 1yar_A 12 ITVFSPDGRLFQVEYAREAVKKGST 36 (233) T ss_dssp -CCCCTTSCCHHHHHHHHHHTTSCC T ss_pred CCEECCCCCCHHHHHHHHHHHCCCC T ss_conf 7149999805699999999975876 No 9 >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=13.02 E-value=31 Score=13.09 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=22.3 Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 5067357775585423395899999999999 Q gi|254781098|r 326 NLHLLPTKGMTMPAISYGGSSILGICITMGY 356 (385) Q Consensus 326 ~~gl~P~tGi~LPFiSyGGssll~~~~~~Gi 356 (385) ++|-.|-.+..=+|++.||.|+.+.-+.--+ T Consensus 37 vL~~~~~i~~~~~FF~lGGdSL~a~~l~~~i 67 (110) T 2cq8_A 37 ILPKVLEVEDSTDFFKSGAASVDVVRLVEEV 67 (110) T ss_dssp HCSSCSCCCTTCBHHHHHCCTTHHHHHHHHH T ss_pred HCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH T ss_conf 8389877899988787489699999999999 No 10 >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 1g0u_G 1fnt_A 1z7q_A 2zcy_G* ... Probab=12.26 E-value=54 Score=11.66 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=0.0 Q ss_pred CCCCCCCCHHHHHHHHHCCCC Q ss_conf 044786410122222220574 Q gi|254781098|r 222 MTGVGDSFQIDSSRDAIIHGG 242 (385) Q Consensus 222 ldp~~~gyQ~~qs~~Ai~sGG 242 (385) ++|.|.=+|+..++.|+.+|| T Consensus 10 fsp~Grl~Q~EYa~~av~~~g 30 (243) T 1ryp_A 10 FSPEGRLYQVEYAFKATNQTN 30 (243) T ss_dssp CCTTSCCHHHHHHHHHTTTTC T ss_pred ECCCCEEHHHHHHHHHHHCCC T ss_conf 999975659998999987069 Done!