RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
         (385 letters)



>gnl|CDD|31115 COG0772, FtsW, Bacterial cell division membrane protein [Cell
           division and chromosome partitioning].
          Length = 381

 Score =  240 bits (613), Expect = 6e-64
 Identities = 127/381 (33%), Positives = 205/381 (53%), Gaps = 16/381 (4%)

Query: 6   ERGILAEWFWT-VDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIP 64
            R ++ +W    +D   L+  L L  +GL++ +++S +VAE+ G   FYF+ R  ++L+ 
Sbjct: 2   LRKMVKKWLKRLIDRLLLLLLLLLAAIGLVMVYSASSAVAERRG--PFYFLIRQLVWLLL 59

Query: 65  SVIIMISFSLFSPKNV---KNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQP 121
            +I+ +   L  P      ++ A +L  + L+ + L LF+G  + GAKRW+ + G S+QP
Sbjct: 60  GLILALLVILRLPLRFLRKRSFAILLYVIILLLLVLVLFFGSSVNGAKRWIALGGLSIQP 119

Query: 122 SEFMKPSFIIVSAWFFAEQIRHPEIPGNIF--SFILFGIVIALLIAQPDFGQSILVSLIW 179
           SEF K + I+  A + + +    +    +F    +L  +   L++ QPD G ++L+  I 
Sbjct: 120 SEFAKIALILYLAAYLSRKGDEIKSFLRLFLKLILLVALPALLILLQPDLGTALLLFAIL 179

Query: 180 DCMFFITGISWLWIVVFAFLGLMSLFIA---YQTMPHVAIRINHFMTG----VGDSFQID 232
             M F+ G+ W WI+    L L    I        P+   R+  F+      +G  +Q+ 
Sbjct: 180 LFMLFLAGLRWRWILALLVLALAGFVILILFIFLKPYQKKRVTSFLDPEADPLGSGYQLI 239

Query: 233 SSRDAIIHGGWFGKGPGEGVIKRV-IPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVR 291
            S  AI  GG FGKG G    K   +P++HTDF+F+V  EEFG I  +F+L +F  +++R
Sbjct: 240 QSLIAIGSGGLFGKGLGGSQQKLGYLPEAHTDFIFAVIGEEFGFIGALFLLALFFLLILR 299

Query: 292 SFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGIC 351
               +L   + F R+   G+AL I  Q FINIG+ L LLP  G+ +P ISYGGSS+L   
Sbjct: 300 GLRIALRAKDLFGRLLAIGIALLIFFQVFINIGMVLGLLPVTGVPLPFISYGGSSLLANS 359

Query: 352 ITMGYLLALTCRRPEKRAYEE 372
           I +G LL ++  R  K + E+
Sbjct: 360 IALGILLNISRHRRRKLSREK 380


>gnl|CDD|110122 pfam01098, FTSW_RODA_SPOVE, Cell cycle protein.  This entry
           includes the following members; FtsW, RodA, SpoVE.
          Length = 356

 Score =  197 bits (504), Expect = 3e-51
 Identities = 109/348 (31%), Positives = 180/348 (51%), Gaps = 7/348 (2%)

Query: 18  DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77
                I  L L  LGL++ +++S   +  L  + F+F KR  ++L+   II +       
Sbjct: 1   RTLLFILLLLLGFLGLVMIYSASGVTSLVLFGDPFFFFKRQLVYLLLGFIIFVVLLRIPL 60

Query: 78  KNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFF 137
           + ++  AF L  + L+ + L    G  + GAKRW+ + G S+QPSEF K + I+  A + 
Sbjct: 61  RFLRKWAFYLFIIGLLLLVLVFVIGPSVNGAKRWIRLGGFSIQPSEFAKIALILFLAAYL 120

Query: 138 AEQIRH--PEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVV 195
             +  +    + G +   ++  I+  L++ QPD G ++L+ +I   M F+ G+ W   + 
Sbjct: 121 GRKPDNVRSRLRGFLIPLVIVLIIAVLILLQPDLGTAVLLGIILLVMLFLAGLPWKLFLG 180

Query: 196 FAFLGLMSLFIAYQTMPHVAIRI----NHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEG 251
              +G+  +       P+   R+    + F   +G  +QI  S  AI  GG FGKG G  
Sbjct: 181 IVGIGVSPIVTLILLEPYQIKRVTSFLDPFKDPLGSGYQIIQSLIAIGSGGIFGKGLGNS 240

Query: 252 VIKR-VIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFG 310
             K   +P++HTDF+F+V  EE G I  + +L +F  ++ R F  +    + F R+   G
Sbjct: 241 QQKLGYLPEAHTDFIFAVIGEELGFIGALLLLALFFLLIYRGFRIARKAKDRFGRLLAVG 300

Query: 311 LALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL 358
           ++L I +Q+FINIG+   LLP  G+ +P  SYGGSS+L   I +G LL
Sbjct: 301 ISLLIFIQSFINIGMVSGLLPVTGLPLPFFSYGGSSLLANLILIGILL 348


>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
           an N-terminal double-glycine peptidase domain [Defense
           mechanisms].
          Length = 709

 Score = 32.1 bits (73), Expect = 0.24
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 10/114 (8%)

Query: 109 KRWLYIAGTSVQPSEFM-KPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQP 167
           K W  IA      +    K       +WF     ++  +   +    L   ++AL     
Sbjct: 117 KLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALAT--- 173

Query: 168 DFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHF 221
                +   ++ D +      S L ++    L L +LF A   +      I H 
Sbjct: 174 ----PLFSQIVIDKVLPDASRSTLTVLAIGLL-LAALFEALLRLLR-TYLIAHL 221


>gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels
           (LTRPC family) [Inorganic ion transport and metabolism,
           Signal transduction mechanisms].
          Length = 1381

 Score = 29.9 bits (67), Expect = 1.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 13  WFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAE 45
           W   +   S IAFL L    L++ F  SPS+ E
Sbjct: 796 WLNVL---SYIAFLLLFTYVLLVDFQPSPSMWE 825


>gnl|CDD|40019 KOG4822, KOG4822, KOG4822, Predicted nuclear membrane protein
           involved in mRNA transport and sex determination via
           splicing modulation [RNA processing and modification,
           Signal transduction mechanisms].
          Length = 1906

 Score = 29.3 bits (65), Expect = 1.8
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 179 WDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAI 238
           W C F+ +GI    + +    G + L  A  +MP +  ++   M     +  I +   + 
Sbjct: 458 WTCPFYSSGIDSHILALLKERGFLPLSAALLSMPELHSKVGDIMVFTDIAMFIGNIILSF 517

Query: 239 IH 240
           + 
Sbjct: 518 MF 519


>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2
           domain and Transmembrane region Proteins (MCTP).  MCTPs
           are involved in Ca2+ signaling at the membrane.  MCTP is
           composed of a variable N-terminal sequence, three C2
           domains, two transmembrane regions (TMRs), and a short
           C-terminal sequence.  It is one of four protein classes
           that are anchored to membranes via a transmembrane
           region; the others being synaptotagmins, extended
           synaptotagmins, and ferlins. MCTPs are the only
           membrane-bound C2 domain proteins that contain two
           functional TMRs. MCTPs are unique in that they bind Ca2+
           but not phospholipids. C2 domains fold into an 8-standed
           beta-sandwich that can adopt 2 structural arrangements:
           Type I and Type II, distinguished by a circular
           permutation involving their N- and C-terminal beta
           strands. Many C2 domains are Ca2+-dependent
           membrane-targeting modules that bind a wide variety of
           substances including bind phospholipids, inositol
           polyphosphates, and intracellular proteins.  Most C2
           domain proteins are either signal transduction enzymes
           that contain a single C2 domain, such as protein kinase
           C, or membrane trafficking proteins which contain at
           least two C2 domains, such as synaptotagmin 1.  However,
           there are a few exceptions to this including RIM
           isoforms and some splice variants of piccolo/aczonin and
           intersectin which only have a single C2 domain.  C2
           domains with a calcium binding region have negatively
           charged residues, primarily aspartates, that serve as
           ligands for calcium ions. This cd contains the first C2
           repeat, C2A, and has a type-II topology.
          Length = 121

 Score = 28.8 bits (65), Expect = 2.4
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 277 FCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLA 312
           F + I  +   + ++ F Y    ++DF+  A   L+
Sbjct: 52  FTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLS 87


>gnl|CDD|31460 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
           production and conversion].
          Length = 660

 Score = 28.8 bits (64), Expect = 2.4
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 50/218 (22%)

Query: 14  FWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFS 73
           +  +D    +A  F L  G+M             GL          L  + S++++  F 
Sbjct: 355 YGEIDPTPFLALFFPLFFGIMFGDLGY-------GL----------LLFLISLLLLRYFK 397

Query: 74  LFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSV-----------QPS 122
              P+ +K    ILL+L +  +     +G E  G    L      +             S
Sbjct: 398 KRLPEGLKKLGKILLYLGISTIIWGFLYG-EFFGPAVLLSTLPIGLLFVYHGLDEGLLFS 456

Query: 123 EFMKPSFIIVSA-------WFFAEQIRHPE-----IPGNIFSFILFGI---VIALLIAQP 167
             +  S +I            F  ++R  +     +P  ++  I+ G+   ++    + P
Sbjct: 457 NILILSLLIGVLHLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWSVP 516

Query: 168 DFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLF 205
           +    +        MF   GI  L +V    +  +   
Sbjct: 517 ELLGMVGA------MFGAFGILGLLVVGLILVPGLVAI 548


>gnl|CDD|37335 KOG2124, KOG2124, KOG2124, Glycosylphosphatidylinositol anchor
           synthesis protein [Signal transduction mechanisms].
          Length = 883

 Score = 27.2 bits (60), Expect = 9.0
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 62  LIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSV 119
           LIP +++M +F        ++   I   L LI+  ++L +   ++    WL I GTS+
Sbjct: 791 LIPFILVMSAFGALVKFLRQSIQTIFFLLLLISDIMSLNFFFLVRDEGSWLDI-GTSI 847


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.332    0.145    0.459 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,091,501
Number of extensions: 304814
Number of successful extensions: 1895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1796
Number of HSP's successfully gapped: 328
Length of query: 385
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 289
Effective length of database: 4,189,273
Effective search space: 1210699897
Effective search space used: 1210699897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.1 bits)