RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] (385 letters) >gnl|CDD|31115 COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]. Length = 381 Score = 240 bits (613), Expect = 6e-64 Identities = 127/381 (33%), Positives = 205/381 (53%), Gaps = 16/381 (4%) Query: 6 ERGILAEWFWT-VDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIP 64 R ++ +W +D L+ L L +GL++ +++S +VAE+ G FYF+ R ++L+ Sbjct: 2 LRKMVKKWLKRLIDRLLLLLLLLLAAIGLVMVYSASSAVAERRG--PFYFLIRQLVWLLL 59 Query: 65 SVIIMISFSLFSPKNV---KNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQP 121 +I+ + L P ++ A +L + L+ + L LF+G + GAKRW+ + G S+QP Sbjct: 60 GLILALLVILRLPLRFLRKRSFAILLYVIILLLLVLVLFFGSSVNGAKRWIALGGLSIQP 119 Query: 122 SEFMKPSFIIVSAWFFAEQIRHPEIPGNIF--SFILFGIVIALLIAQPDFGQSILVSLIW 179 SEF K + I+ A + + + + +F +L + L++ QPD G ++L+ I Sbjct: 120 SEFAKIALILYLAAYLSRKGDEIKSFLRLFLKLILLVALPALLILLQPDLGTALLLFAIL 179 Query: 180 DCMFFITGISWLWIVVFAFLGLMSLFIA---YQTMPHVAIRINHFMTG----VGDSFQID 232 M F+ G+ W WI+ L L I P+ R+ F+ +G +Q+ Sbjct: 180 LFMLFLAGLRWRWILALLVLALAGFVILILFIFLKPYQKKRVTSFLDPEADPLGSGYQLI 239 Query: 233 SSRDAIIHGGWFGKGPGEGVIKRV-IPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVR 291 S AI GG FGKG G K +P++HTDF+F+V EEFG I +F+L +F +++R Sbjct: 240 QSLIAIGSGGLFGKGLGGSQQKLGYLPEAHTDFIFAVIGEEFGFIGALFLLALFFLLILR 299 Query: 292 SFLYSLVESNDFIRMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGIC 351 +L + F R+ G+AL I Q FINIG+ L LLP G+ +P ISYGGSS+L Sbjct: 300 GLRIALRAKDLFGRLLAIGIALLIFFQVFINIGMVLGLLPVTGVPLPFISYGGSSLLANS 359 Query: 352 ITMGYLLALTCRRPEKRAYEE 372 I +G LL ++ R K + E+ Sbjct: 360 IALGILLNISRHRRRKLSREK 380 >gnl|CDD|110122 pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE. Length = 356 Score = 197 bits (504), Expect = 3e-51 Identities = 109/348 (31%), Positives = 180/348 (51%), Gaps = 7/348 (2%) Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77 I L L LGL++ +++S + L + F+F KR ++L+ II + Sbjct: 1 RTLLFILLLLLGFLGLVMIYSASGVTSLVLFGDPFFFFKRQLVYLLLGFIIFVVLLRIPL 60 Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFF 137 + ++ AF L + L+ + L G + GAKRW+ + G S+QPSEF K + I+ A + Sbjct: 61 RFLRKWAFYLFIIGLLLLVLVFVIGPSVNGAKRWIRLGGFSIQPSEFAKIALILFLAAYL 120 Query: 138 AEQIRH--PEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVV 195 + + + G + ++ I+ L++ QPD G ++L+ +I M F+ G+ W + Sbjct: 121 GRKPDNVRSRLRGFLIPLVIVLIIAVLILLQPDLGTAVLLGIILLVMLFLAGLPWKLFLG 180 Query: 196 FAFLGLMSLFIAYQTMPHVAIRI----NHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEG 251 +G+ + P+ R+ + F +G +QI S AI GG FGKG G Sbjct: 181 IVGIGVSPIVTLILLEPYQIKRVTSFLDPFKDPLGSGYQIIQSLIAIGSGGIFGKGLGNS 240 Query: 252 VIKR-VIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFG 310 K +P++HTDF+F+V EE G I + +L +F ++ R F + + F R+ G Sbjct: 241 QQKLGYLPEAHTDFIFAVIGEELGFIGALLLLALFFLLIYRGFRIARKAKDRFGRLLAVG 300 Query: 311 LALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL 358 ++L I +Q+FINIG+ LLP G+ +P SYGGSS+L I +G LL Sbjct: 301 ISLLIFIQSFINIGMVSGLLPVTGLPLPFFSYGGSSLLANLILIGILL 348 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 32.1 bits (73), Expect = 0.24 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 10/114 (8%) Query: 109 KRWLYIAGTSVQPSEFM-KPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQP 167 K W IA + K +WF ++ + + L ++AL Sbjct: 117 KLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALAT--- 173 Query: 168 DFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHF 221 + ++ D + S L ++ L L +LF A + I H Sbjct: 174 ----PLFSQIVIDKVLPDASRSTLTVLAIGLL-LAALFEALLRLLR-TYLIAHL 221 >gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 1381 Score = 29.9 bits (67), Expect = 1.2 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Query: 13 WFWTVDWFSLIAFLFLLGLGLMLSFASSPSVAE 45 W + S IAFL L L++ F SPS+ E Sbjct: 796 WLNVL---SYIAFLLLFTYVLLVDFQPSPSMWE 825 >gnl|CDD|40019 KOG4822, KOG4822, KOG4822, Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification, Signal transduction mechanisms]. Length = 1906 Score = 29.3 bits (65), Expect = 1.8 Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 179 WDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAI 238 W C F+ +GI + + G + L A +MP + ++ M + I + + Sbjct: 458 WTCPFYSSGIDSHILALLKERGFLPLSAALLSMPELHSKVGDIMVFTDIAMFIGNIILSF 517 Query: 239 IH 240 + Sbjct: 518 MF 519 >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 Score = 28.8 bits (65), Expect = 2.4 Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 277 FCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLA 312 F + I + + ++ F Y ++DF+ A L+ Sbjct: 52 FTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLS 87 >gnl|CDD|31460 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]. Length = 660 Score = 28.8 bits (64), Expect = 2.4 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 50/218 (22%) Query: 14 FWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFS 73 + +D +A F L G+M GL L + S++++ F Sbjct: 355 YGEIDPTPFLALFFPLFFGIMFGDLGY-------GL----------LLFLISLLLLRYFK 397 Query: 74 LFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSV-----------QPS 122 P+ +K ILL+L + + +G E G L + S Sbjct: 398 KRLPEGLKKLGKILLYLGISTIIWGFLYG-EFFGPAVLLSTLPIGLLFVYHGLDEGLLFS 456 Query: 123 EFMKPSFIIVSA-------WFFAEQIRHPE-----IPGNIFSFILFGI---VIALLIAQP 167 + S +I F ++R + +P ++ I+ G+ ++ + P Sbjct: 457 NILILSLLIGVLHLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWSVP 516 Query: 168 DFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLF 205 + + MF GI L +V + + Sbjct: 517 ELLGMVGA------MFGAFGILGLLVVGLILVPGLVAI 548 >gnl|CDD|37335 KOG2124, KOG2124, KOG2124, Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]. Length = 883 Score = 27.2 bits (60), Expect = 9.0 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 62 LIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSV 119 LIP +++M +F ++ I L LI+ ++L + ++ WL I GTS+ Sbjct: 791 LIPFILVMSAFGALVKFLRQSIQTIFFLLLLISDIMSLNFFFLVRDEGSWLDI-GTSI 847 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.332 0.145 0.459 Gapped Lambda K H 0.267 0.0736 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,091,501 Number of extensions: 304814 Number of successful extensions: 1895 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1796 Number of HSP's successfully gapped: 328 Length of query: 385 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 289 Effective length of database: 4,189,273 Effective search space: 1210699897 Effective search space used: 1210699897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 58 (26.1 bits)