RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] (385 letters) >gnl|CDD|162950 TIGR02614, ftsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. Length = 356 Score = 290 bits (744), Expect = 6e-79 Identities = 127/356 (35%), Positives = 198/356 (55%), Gaps = 15/356 (4%) Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77 D L L LLG+GL++ +++S +VA +LG + FYF+KR + + +I+M S Sbjct: 1 DRLLLFVVLLLLGIGLVMVYSASAAVALRLGGDPFYFLKRQLFYALLGLILMFVASRLPL 60 Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGV--EIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAW 135 + + + +L ++++ + L L G+ E+ GA+RW+ + G S+QPSEF K + II AW Sbjct: 61 RFWRKLSVPILLIAIVLLVLVLIPGIGKEVNGARRWIGLGGFSIQPSEFAKLALIIYLAW 120 Query: 136 FFAEQIRHPEIPGNIFSFI-----LFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISW 190 + A R + + F+ L +V LL+ QPDFG ++++ I M F+ G Sbjct: 121 YLA---RKQKEVKSFLKFLKPLAVLGLLVGLLLLLQPDFGTTVVIFFITLGMLFLAGAPL 177 Query: 191 LWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTG----VGDSFQIDSSRDAIIHGGWFGK 246 + + LGL+ I + P+ RI F+ G +Q+ S A+ GG FG Sbjct: 178 RYFALLLLLGLLGGAILIVSSPYRMRRILSFLDPWADPFGSGYQLTQSLIALGSGGLFGV 237 Query: 247 GPGEGVIKR-VIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIR 305 G G V K +P++HTDF+F+V EE G I + ++ +FAF+V R + + F R Sbjct: 238 GLGNSVQKLFYLPEAHTDFIFAVIGEELGFIGVLIVILLFAFLVWRGLRIARRAEDLFGR 297 Query: 306 MAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALT 361 G+ + I LQAFINIGV L LLPTKG+T+P ISYGGSS++ I +G LL ++ Sbjct: 298 YLAAGITIWIGLQAFINIGVVLGLLPTKGLTLPFISYGGSSLVATMIAIGLLLNIS 353 >gnl|CDD|162763 TIGR02210, rodA_shape, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. Length = 352 Score = 195 bits (499), Expect = 1e-50 Identities = 102/361 (28%), Positives = 183/361 (50%), Gaps = 22/361 (6%) Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77 DW L+ L L+G+GL++ +++S F + ++ +++MI +L Sbjct: 1 DWGLLLLVLLLVGIGLLVLYSASGGSFA-------PFALKQLVWFGIGLVLMIIVALIDY 53 Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFF 137 + ++ A+ L L L+ + L +G KGA+RW+ + +QPSEF K + I++ A + Sbjct: 54 RFLRRLAYPLYVLGLLLLVAVLLFGTTGKGAQRWIDLGFFRLQPSEFAKLALILMLAKYL 113 Query: 138 AEQIRHPEIPGN----IFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWI 193 + R + P + + IL + L++ QPD G +++++ I + F+ G+SW I Sbjct: 114 SR--RPLDEPPRLKDLLKALILILVPALLILKQPDLGTALVIAAIGLFVLFLAGLSWKLI 171 Query: 194 VVFAFLGLMSLFIAYQTM---PHVAIRINHFMT----GVGDSFQIDSSRDAIIHGGWFGK 246 + G ++ + R+ F+ +G + I S+ AI GG FGK Sbjct: 172 LALLAAGAAAIPSIIWWFLLHDYQKQRVLTFLDPESDPLGAGYHIIQSKIAIGSGGLFGK 231 Query: 247 GPGEG--VIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFI 304 G +G +P+ HTDF+FSV AEEFG + + +L ++ +++R + + F Sbjct: 232 GWLQGTQSQLEFLPEQHTDFIFSVLAEEFGFVGGLVLLLLYLLLILRGLRIASNAKDRFG 291 Query: 305 RMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRR 364 R+ G+AL F+NIG+ + LLP G+ +P +SYGGSS+L + I G L+++ R Sbjct: 292 RLLAGGIALTFFFYVFVNIGMVIGLLPVVGIPLPLVSYGGSSLLTLMIGFGLLMSIHTHR 351 Query: 365 P 365 Sbjct: 352 R 352 >gnl|CDD|131664 TIGR02615, spoVE, stage V sporulation protein E. This model represents an exception within the members of the FtsW model TIGR02614. This exception occurs only in endospore-forming genera such as Bacillus, Geobacillus, and Oceanobacillus. Like FtsW, members are found in a peptidoglycan operon context, but in these genera they part of a larger set of paralogs (not just the pair FtsW and RodA) and are required specifically for sporulation, not for viability. Length = 354 Score = 147 bits (374), Expect = 3e-36 Identities = 103/354 (29%), Positives = 172/354 (48%), Gaps = 17/354 (4%) Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77 D+ LI + L+ +G+++ +++S AE ++FYF+KR L+ I V M Sbjct: 1 DYLLLIVIMLLVAIGVVMVYSASAYWAEYKFNDSFYFLKRQLLWAILGVFAMFFTMNIDY 60 Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGV--EIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAW 135 K A +L+ + + + L L GV E GA+RW+ + S+QPSE K + II A Sbjct: 61 HTWKRWAKMLMVICFVLLLLVLIPGVGMERNGARRWIGVGAFSIQPSEIAKYALIIYLAK 120 Query: 136 FFAEQ------IRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGIS 189 +E+ R IP + + FG+++ QP+ + ++ ++ M F+ G Sbjct: 121 SLSEKQEYITSFRKGVIPYLLLAGFAFGLIML----QPNLSTATVIVMVCFIMLFVAGAR 176 Query: 190 WLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTG----VGDSFQIDSSRDAIIHGGWFG 245 + +G+ + P RI F+ +G +QI S A+ GG FG Sbjct: 177 LSHFIALVGIGISGGVALILSAPFRIGRILSFLNPWEDPLGSGYQIIQSLYALGSGGLFG 236 Query: 246 KGPGEGVIKRV-IPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFI 304 G G+ K +P+ H DF+F++ EE G+I FI+ +F ++ R +L + F Sbjct: 237 VGLGQSRQKCFYLPEPHNDFIFAIIGEELGLIGGTFIILLFVILLWRGIRIALKAPDLFG 296 Query: 305 RMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL 358 + G+ I +QA INI V +P G+T+P ISYGGSS+ + + +G LL Sbjct: 297 TLLAVGITSMIGIQAMINIAVVTGSIPVTGVTLPFISYGGSSLTLMMMAVGILL 350 >gnl|CDD|182719 PRK10774, PRK10774, cell division protein FtsW; Provisional. Length = 404 Score = 120 bits (303), Expect = 6e-28 Identities = 100/353 (28%), Positives = 170/353 (48%), Gaps = 23/353 (6%) Query: 25 FLFLLGLGL------MLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPK 78 L L GL M++ AS P V ++L + F F KR A++LI + + + + Sbjct: 37 TLLWLTFGLAAIGFVMVTSASMP-VGQRLANDPFLFAKRDAVYLILAFGLALITLRLPME 95 Query: 79 NVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFA 138 + + +L S+I + + L G + GA RW+ + +QP+E K S A + Sbjct: 96 FWQRYSATMLLGSIIMLLIVLVVGSSVNGASRWIALGPLRIQPAELTKLSLFCYLANYLV 155 Query: 139 EQIRHPEIPGNIFSFIL-FGIVIA---LLIAQPDFGQSILVSLIWDCMFFITGIS-WLWI 193 ++ E+ N + F+ G+++ LL+AQPD G +++ + M F+ G W +I Sbjct: 156 RKVD--EVRNNFWGFLKPMGVMLVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFI 213 Query: 194 VVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSF----QIDSSRDAIIHGGWFGKGPG 249 + +G+ ++ + P+ R+ F D F Q+ S A G +G+G G Sbjct: 214 AIIG-MGISAVVLLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLG 272 Query: 250 EGVIK-RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLY---SLVESNDFIR 305 V K +P++HTDF+FS+ EE G I + L + F+ R+ +L F Sbjct: 273 NSVQKLEYLPEAHTDFIFSIIGEELGYIGVVLALLMVFFVAFRAMSIGRKALEIDQRFSG 332 Query: 306 MAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL 358 + + + QA +N+G +LPTKG+T+P ISYGGSS+L + + LL Sbjct: 333 FLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMLLL 385 >gnl|CDD|182737 PRK10794, PRK10794, cell wall shape-determining protein; Provisional. Length = 370 Score = 117 bits (295), Expect = 5e-27 Identities = 94/359 (26%), Positives = 170/359 (47%), Gaps = 13/359 (3%) Query: 14 FWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFS 73 FW L +L L + + + + +G+ ++R + +++M+ + Sbjct: 10 FWDKIHIDPTMLLIILALLVYSALVIWSASGQDIGM-----MERKIGQIAMGLVVMVVMA 64 Query: 74 LFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVS 133 P+ + A L + +I + +G KGA+RWL + QPSE K + ++ Sbjct: 65 QIPPRVYEGWAPYLYIICIILLVAVDAFGQISKGAQRWLDLGIVRFQPSEIAKIAVPLMV 124 Query: 134 AWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWI 193 A F + P + + +L + L+ AQPD G SILV+L + F++G+SW I Sbjct: 125 ARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLI 184 Query: 194 VVFAFLGLMSLFIAYQTMPHVAIRINHFM------TGVGDSFQIDSSRDAIIHGGWFGKG 247 V L + I + + H R M +G + I S+ AI GG GKG Sbjct: 185 GVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKG 244 Query: 248 PGEGVIKRV--IPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIR 305 G ++ +P+ HTDF+F+V AEE G++ + +L ++ +++R + F R Sbjct: 245 WLHGTQSQLEFLPERHTDFIFAVLAEELGLVGVLILLALYILLIMRGLWIAARAQTTFGR 304 Query: 306 MAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRR 364 + GL L + + F+NIG+ +LP G+ +P +SYGGS+++ + G ++++ R Sbjct: 305 VMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHR 363 >gnl|CDD|184718 PRK14510, PRK14510, putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional. Length = 1221 Score = 31.0 bits (70), Expect = 0.53 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 209 QTMPHV-AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFS 267 M H A+RI+H G+ F++ A G + KGPGE + +V +S Sbjct: 1016 ANMRHAGALRIDHVR-GLERLFEVPQGASA-KEGAYL-KGPGEELFGQVALES-QRAQCP 1071 Query: 268 VAAEEFGII 276 V E+ G I Sbjct: 1072 VIGEDLGTI 1080 >gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown. Length = 383 Score = 30.0 bits (68), Expect = 0.94 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 52 FYFVKRHAL-FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAK 109 F++R L FL + L ILLF+ L+ W ++IK AK Sbjct: 69 VKFIERKGLPFLFFRLRKRRGIVLG----------ILLFVILLYFLSNFIWSIDIKTAK 117 >gnl|CDD|178970 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed. Length = 505 Score = 29.5 bits (67), Expect = 1.5 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Query: 150 IFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLG--------L 201 + S L+ Q+ L+ +W +F +G+SW+++ + F G L Sbjct: 33 LLSLAGL----LWLLLGASPKQAALIGFLWGFGYFGSGLSWIYVSIHTFGGMPAWLAPLL 88 Query: 202 MSLFIAY 208 + L AY Sbjct: 89 VLLLAAY 95 >gnl|CDD|150299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835 Score = 28.7 bits (65), Expect = 2.3 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%) Query: 12 EWFWTVDWFSLIAFLFLLGLGLMLSFASSPS-VAEKLGLENFYFVKRHALFLIPSVIIMI 70 + ++ + LL L +L F + S L N LFL+ +++++ Sbjct: 358 LHLKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLL---TLLFLLLYLLLLL 414 Query: 71 SFSLFSPKNVKNTAFILLFLSL 92 F + +LL + L Sbjct: 415 LFLKKQIRKKLVIILLLLVVVL 436 Score = 28.7 bits (65), Expect = 2.5 Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 31/183 (16%) Query: 46 KLGLENFYFVKRHALFLI--PSVIIMISFSLFSPKNVKNTAFI-------LLFLSLIAMF 96 KL + +F F + L I + +++ F K +K + L LS Sbjct: 264 KLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLILSFYLPP 323 Query: 97 LTLFWGV---EIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSF 153 L L W + R+ ++ F + AE + H + + Sbjct: 324 LDLVWHGFQAPVWFPYRFSFL--------------FSFLILLLAAEALLHLKQLKKLKIL 369 Query: 154 ILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPH 213 I +++ L I S S + +T L+++++ L+ LF+ Q Sbjct: 370 ISILLLVLLFILVFLLNLSKHYSFLTQTNLLLT---LLFLLLYLL--LLLLFLKKQIRKK 424 Query: 214 VAI 216 + I Sbjct: 425 LVI 427 >gnl|CDD|163109 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451 Score = 28.7 bits (65), Expect = 2.3 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 29/108 (26%) Query: 128 SFIIVSAWFFAEQIRH-----PEIPGNIFSFILFGIVIALLIAQ------PDFGQSILVS 176 +I+ A A +R P+I + +L ++ LLI +S L Sbjct: 4 LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLL-FLLIFALFGLYRSWRRRSRLRE 62 Query: 177 LIWDCMF-----------------FITGISWLWIVVFAFLGLMSLFIA 207 ++ + S LW++++ L L L + Sbjct: 63 MLLRILLAWTLTFLILALLAFLLKTGGEFSRLWLLLWFLLALALLLLG 110 >gnl|CDD|178290 PLN02687, PLN02687, flavonoid 3'-monooxygenase. Length = 517 Score = 28.2 bits (63), Expect = 3.3 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 9/44 (20%) Query: 103 VEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPEI 146 EIK L+ AGT S W AE IRHP+I Sbjct: 296 TEIKALLLNLFTAGTDTTSS---------TVEWAIAELIRHPDI 330 >gnl|CDD|183807 PRK12875, ubiA, prenyltransferase; Reviewed. Length = 282 Score = 28.1 bits (63), Expect = 3.7 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 19/56 (33%) Query: 111 WLYIAGTSV--------QPSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGI 158 WLY+AG V ++ P+ + + A+F P N+F L+G+ Sbjct: 20 WLYLAGPVVVGVAYAADSVADLFSPAAVALFAYFL--------FPANVF---LYGV 64 >gnl|CDD|163048 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. Length = 764 Score = 28.1 bits (63), Expect = 3.9 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 10/90 (11%) Query: 22 LIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVK 81 + G + + +P +E +L + I S K Sbjct: 93 FLEAAVYAIFGYLQNKLVTPLDFILSIVEA-------SLSFVLYYIFNYSIPCLKNGRTK 145 Query: 82 NTA---FILLFLSLIAMFLTLFWGVEIKGA 108 + I+ + LIA LT G+ I G Sbjct: 146 HLLTNEEIVSLIILIASVLTGLRGLSIWGL 175 >gnl|CDD|150204 pfam09451, ATG27, Autophagy-related protein 27. Length = 265 Score = 28.2 bits (63), Expect = 4.1 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 9/42 (21%) Query: 273 FGIIFCIFILCIFAFIVVRSFL----YS-----LVESNDFIR 305 F +F L + +++ S+L Y LV DF+R Sbjct: 200 FTWLFIYLFLFVAIYLIGGSWLNYNRYGARGFDLVPHGDFLR 241 >gnl|CDD|151046 pfam10483, Hap2_elong, Histone acetylation protein 2. Hap2 is one of three histone acetyltransferases proteins that, in yeasts, are found associated with elongating forms of RNA polymerase II (Elongator). The Haps can be isolated in two forms, as a six-subunit complex with Elongator and as a complex of the three proteins on their own. The role of the Hap complex in transcription is still speculative, being possibly to keep the HAT activity of free Elongator in check, allowing histone acetylation only in the presence of a transcribing polymerase, or the interaction with Haps might render Elongator susceptible to modifications thereby altering its activity. Length = 286 Score = 28.1 bits (63), Expect = 4.3 Identities = 9/31 (29%), Positives = 12/31 (38%) Query: 355 GYLLALTCRRPEKRAYEEDFMHTSISHSSGS 385 G +L L RR R E F + +H Sbjct: 188 GIVLELENRRKSGRGLTETFFLSPATHEYEQ 218 >gnl|CDD|162116 TIGR00930, 2a30, K-Cl cotransporter. Length = 953 Score = 28.1 bits (63), Expect = 4.3 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 149 NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGIS 189 NI+ ILF + ++ ++ Q G S+L+ L+ C+ ITG+S Sbjct: 91 NIWGVILF-LRLSWIVGQAGIGLSLLIILLCCCVTTITGLS 130 >gnl|CDD|162214 TIGR01129, secD, protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. Length = 397 Score = 27.6 bits (62), Expect = 5.7 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 159 VIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVA 215 + A LI ++ +++ +F + L I + L ++S F A T+P +A Sbjct: 251 IKAGLIG---LVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIA 304 >gnl|CDD|180571 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated. Length = 490 Score = 27.6 bits (62), Expect = 6.0 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 9/73 (12%) Query: 149 NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLM-SLFIA 207 + + + + L+ PD G+ FFI ++ ++ + +G + SL+ Sbjct: 35 VLGITLTLILALWLVFTVPDAGEI----FAAGLWFFIDDLNVFFLALIGVVGFLTSLY-- 88 Query: 208 YQTMPHVAIRINH 220 ++ ++ + H Sbjct: 89 --SIGYMRHEVEH 99 >gnl|CDD|151683 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed. Length = 168 Score = 27.2 bits (61), Expect = 8.0 Identities = 5/41 (12%), Positives = 18/41 (43%) Query: 61 FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFW 101 F +P ++++ L ++ A + + + ++ M + Sbjct: 80 FFMPVALVVLVLMLVPNPALQLIASLAMLVLILVMVIDGIL 120 >gnl|CDD|182926 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional. Length = 469 Score = 27.0 bits (60), Expect = 9.1 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Query: 156 FGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWI 193 F V+ LL + D Q+++V+ +W F G+ +L+I Sbjct: 425 FAFVLVLLTLEDDTRQALIVTPLW---FIALGLGYLFI 459 >gnl|CDD|163055 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter. Length = 382 Score = 26.9 bits (60), Expect = 9.3 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 11/58 (18%) Query: 53 YFVKRHAL-FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAK 109 + R L FL + ILLFL+++ W ++I G K Sbjct: 67 KIIARKGLPFLFKRLRKRPGI----------LIGILLFLAIVYFLSNFIWKIDITGVK 114 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.332 0.145 0.459 Gapped Lambda K H 0.267 0.0634 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,608,267 Number of extensions: 457721 Number of successful extensions: 2000 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1936 Number of HSP's successfully gapped: 207 Length of query: 385 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 290 Effective length of database: 3,941,713 Effective search space: 1143096770 Effective search space used: 1143096770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 58 (26.3 bits)