RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
(385 letters)
>gnl|CDD|162950 TIGR02614, ftsW, cell division protein FtsW. This family consists
of FtsW, an integral membrane protein with ten
transmembrane segments. In general, it is one of two
paralogs involved in peptidoglycan biosynthesis, the
other being RodA, and is essential for cell division.
All members of the seed alignment for this model are
encoded in operons for the biosynthesis of
UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein
(peptidoglycan). The FtsW designation is not used in
endospore-forming bacterial (e.g. Bacillus subtilis),
where the member of this family is designated SpoVE and
three or more RodA/FtsW/SpoVE family paralogs are
present. SpoVE acts in spore cortex formation and is
dispensible for growth. Biological rolls for FtsW in
cell division include recruitment of penicillin-binding
protein 3 to the division site.
Length = 356
Score = 290 bits (744), Expect = 6e-79
Identities = 127/356 (35%), Positives = 198/356 (55%), Gaps = 15/356 (4%)
Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77
D L L LLG+GL++ +++S +VA +LG + FYF+KR + + +I+M S
Sbjct: 1 DRLLLFVVLLLLGIGLVMVYSASAAVALRLGGDPFYFLKRQLFYALLGLILMFVASRLPL 60
Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGV--EIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAW 135
+ + + +L ++++ + L L G+ E+ GA+RW+ + G S+QPSEF K + II AW
Sbjct: 61 RFWRKLSVPILLIAIVLLVLVLIPGIGKEVNGARRWIGLGGFSIQPSEFAKLALIIYLAW 120
Query: 136 FFAEQIRHPEIPGNIFSFI-----LFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISW 190
+ A R + + F+ L +V LL+ QPDFG ++++ I M F+ G
Sbjct: 121 YLA---RKQKEVKSFLKFLKPLAVLGLLVGLLLLLQPDFGTTVVIFFITLGMLFLAGAPL 177
Query: 191 LWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTG----VGDSFQIDSSRDAIIHGGWFGK 246
+ + LGL+ I + P+ RI F+ G +Q+ S A+ GG FG
Sbjct: 178 RYFALLLLLGLLGGAILIVSSPYRMRRILSFLDPWADPFGSGYQLTQSLIALGSGGLFGV 237
Query: 247 GPGEGVIKR-VIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIR 305
G G V K +P++HTDF+F+V EE G I + ++ +FAF+V R + + F R
Sbjct: 238 GLGNSVQKLFYLPEAHTDFIFAVIGEELGFIGVLIVILLFAFLVWRGLRIARRAEDLFGR 297
Query: 306 MAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALT 361
G+ + I LQAFINIGV L LLPTKG+T+P ISYGGSS++ I +G LL ++
Sbjct: 298 YLAAGITIWIGLQAFINIGVVLGLLPTKGLTLPFISYGGSSLVATMIAIGLLLNIS 353
>gnl|CDD|162763 TIGR02210, rodA_shape, rod shape-determining protein RodA. This
protein is a member of the FtsW/RodA/SpoVE family
(pfam01098). It is found only in species with rod (or
spiral) shapes. In many species, mutation of rodA has
been shown to correlate with loss of the normal rod
shape. Note that RodA homologs are found, scoring below
the cutoffs for this model, in a number of both
rod-shaped and coccoid bacteria, including four proteins
in Bacillus anthracis, for example.
Length = 352
Score = 195 bits (499), Expect = 1e-50
Identities = 102/361 (28%), Positives = 183/361 (50%), Gaps = 22/361 (6%)
Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77
DW L+ L L+G+GL++ +++S F + ++ +++MI +L
Sbjct: 1 DWGLLLLVLLLVGIGLLVLYSASGGSFA-------PFALKQLVWFGIGLVLMIIVALIDY 53
Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFF 137
+ ++ A+ L L L+ + L +G KGA+RW+ + +QPSEF K + I++ A +
Sbjct: 54 RFLRRLAYPLYVLGLLLLVAVLLFGTTGKGAQRWIDLGFFRLQPSEFAKLALILMLAKYL 113
Query: 138 AEQIRHPEIPGN----IFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWI 193
+ R + P + + IL + L++ QPD G +++++ I + F+ G+SW I
Sbjct: 114 SR--RPLDEPPRLKDLLKALILILVPALLILKQPDLGTALVIAAIGLFVLFLAGLSWKLI 171
Query: 194 VVFAFLGLMSLFIAYQTM---PHVAIRINHFMT----GVGDSFQIDSSRDAIIHGGWFGK 246
+ G ++ + R+ F+ +G + I S+ AI GG FGK
Sbjct: 172 LALLAAGAAAIPSIIWWFLLHDYQKQRVLTFLDPESDPLGAGYHIIQSKIAIGSGGLFGK 231
Query: 247 GPGEG--VIKRVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFI 304
G +G +P+ HTDF+FSV AEEFG + + +L ++ +++R + + F
Sbjct: 232 GWLQGTQSQLEFLPEQHTDFIFSVLAEEFGFVGGLVLLLLYLLLILRGLRIASNAKDRFG 291
Query: 305 RMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRR 364
R+ G+AL F+NIG+ + LLP G+ +P +SYGGSS+L + I G L+++ R
Sbjct: 292 RLLAGGIALTFFFYVFVNIGMVIGLLPVVGIPLPLVSYGGSSLLTLMIGFGLLMSIHTHR 351
Query: 365 P 365
Sbjct: 352 R 352
>gnl|CDD|131664 TIGR02615, spoVE, stage V sporulation protein E. This model
represents an exception within the members of the FtsW
model TIGR02614. This exception occurs only in
endospore-forming genera such as Bacillus, Geobacillus,
and Oceanobacillus. Like FtsW, members are found in a
peptidoglycan operon context, but in these genera they
part of a larger set of paralogs (not just the pair FtsW
and RodA) and are required specifically for sporulation,
not for viability.
Length = 354
Score = 147 bits (374), Expect = 3e-36
Identities = 103/354 (29%), Positives = 172/354 (48%), Gaps = 17/354 (4%)
Query: 18 DWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSP 77
D+ LI + L+ +G+++ +++S AE ++FYF+KR L+ I V M
Sbjct: 1 DYLLLIVIMLLVAIGVVMVYSASAYWAEYKFNDSFYFLKRQLLWAILGVFAMFFTMNIDY 60
Query: 78 KNVKNTAFILLFLSLIAMFLTLFWGV--EIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAW 135
K A +L+ + + + L L GV E GA+RW+ + S+QPSE K + II A
Sbjct: 61 HTWKRWAKMLMVICFVLLLLVLIPGVGMERNGARRWIGVGAFSIQPSEIAKYALIIYLAK 120
Query: 136 FFAEQ------IRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGIS 189
+E+ R IP + + FG+++ QP+ + ++ ++ M F+ G
Sbjct: 121 SLSEKQEYITSFRKGVIPYLLLAGFAFGLIML----QPNLSTATVIVMVCFIMLFVAGAR 176
Query: 190 WLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTG----VGDSFQIDSSRDAIIHGGWFG 245
+ +G+ + P RI F+ +G +QI S A+ GG FG
Sbjct: 177 LSHFIALVGIGISGGVALILSAPFRIGRILSFLNPWEDPLGSGYQIIQSLYALGSGGLFG 236
Query: 246 KGPGEGVIKRV-IPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFI 304
G G+ K +P+ H DF+F++ EE G+I FI+ +F ++ R +L + F
Sbjct: 237 VGLGQSRQKCFYLPEPHNDFIFAIIGEELGLIGGTFIILLFVILLWRGIRIALKAPDLFG 296
Query: 305 RMAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL 358
+ G+ I +QA INI V +P G+T+P ISYGGSS+ + + +G LL
Sbjct: 297 TLLAVGITSMIGIQAMINIAVVTGSIPVTGVTLPFISYGGSSLTLMMMAVGILL 350
>gnl|CDD|182719 PRK10774, PRK10774, cell division protein FtsW; Provisional.
Length = 404
Score = 120 bits (303), Expect = 6e-28
Identities = 100/353 (28%), Positives = 170/353 (48%), Gaps = 23/353 (6%)
Query: 25 FLFLLGLGL------MLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPK 78
L L GL M++ AS P V ++L + F F KR A++LI + + + +
Sbjct: 37 TLLWLTFGLAAIGFVMVTSASMP-VGQRLANDPFLFAKRDAVYLILAFGLALITLRLPME 95
Query: 79 NVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFA 138
+ + +L S+I + + L G + GA RW+ + +QP+E K S A +
Sbjct: 96 FWQRYSATMLLGSIIMLLIVLVVGSSVNGASRWIALGPLRIQPAELTKLSLFCYLANYLV 155
Query: 139 EQIRHPEIPGNIFSFIL-FGIVIA---LLIAQPDFGQSILVSLIWDCMFFITGIS-WLWI 193
++ E+ N + F+ G+++ LL+AQPD G +++ + M F+ G W +I
Sbjct: 156 RKVD--EVRNNFWGFLKPMGVMLVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFI 213
Query: 194 VVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSF----QIDSSRDAIIHGGWFGKGPG 249
+ +G+ ++ + P+ R+ F D F Q+ S A G +G+G G
Sbjct: 214 AIIG-MGISAVVLLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLG 272
Query: 250 EGVIK-RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLY---SLVESNDFIR 305
V K +P++HTDF+FS+ EE G I + L + F+ R+ +L F
Sbjct: 273 NSVQKLEYLPEAHTDFIFSIIGEELGYIGVVLALLMVFFVAFRAMSIGRKALEIDQRFSG 332
Query: 306 MAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL 358
+ + + QA +N+G +LPTKG+T+P ISYGGSS+L + + LL
Sbjct: 333 FLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMLLL 385
>gnl|CDD|182737 PRK10794, PRK10794, cell wall shape-determining protein;
Provisional.
Length = 370
Score = 117 bits (295), Expect = 5e-27
Identities = 94/359 (26%), Positives = 170/359 (47%), Gaps = 13/359 (3%)
Query: 14 FWTVDWFSLIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFS 73
FW L +L L + + + + +G+ ++R + +++M+ +
Sbjct: 10 FWDKIHIDPTMLLIILALLVYSALVIWSASGQDIGM-----MERKIGQIAMGLVVMVVMA 64
Query: 74 LFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIVS 133
P+ + A L + +I + +G KGA+RWL + QPSE K + ++
Sbjct: 65 QIPPRVYEGWAPYLYIICIILLVAVDAFGQISKGAQRWLDLGIVRFQPSEIAKIAVPLMV 124
Query: 134 AWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWI 193
A F + P + + +L + L+ AQPD G SILV+L + F++G+SW I
Sbjct: 125 ARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLI 184
Query: 194 VVFAFLGLMSLFIAYQTMPHVAIRINHFM------TGVGDSFQIDSSRDAIIHGGWFGKG 247
V L + I + + H R M +G + I S+ AI GG GKG
Sbjct: 185 GVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKG 244
Query: 248 PGEGVIKRV--IPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIR 305
G ++ +P+ HTDF+F+V AEE G++ + +L ++ +++R + F R
Sbjct: 245 WLHGTQSQLEFLPERHTDFIFAVLAEELGLVGVLILLALYILLIMRGLWIAARAQTTFGR 304
Query: 306 MAIFGLALQIALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLLALTCRR 364
+ GL L + + F+NIG+ +LP G+ +P +SYGGS+++ + G ++++ R
Sbjct: 305 VMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHR 363
>gnl|CDD|184718 PRK14510, PRK14510, putative bifunctional
4-alpha-glucanotransferase/glycogen debranching enzyme;
Provisional.
Length = 1221
Score = 31.0 bits (70), Expect = 0.53
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 209 QTMPHV-AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFS 267
M H A+RI+H G+ F++ A G + KGPGE + +V +S
Sbjct: 1016 ANMRHAGALRIDHVR-GLERLFEVPQGASA-KEGAYL-KGPGEELFGQVALES-QRAQCP 1071
Query: 268 VAAEEFGII 276
V E+ G I
Sbjct: 1072 VIGEDLGTI 1080
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 30.0 bits (68), Expect = 0.94
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 52 FYFVKRHAL-FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAK 109
F++R L FL + L ILLF+ L+ W ++IK AK
Sbjct: 69 VKFIERKGLPFLFFRLRKRRGIVLG----------ILLFVILLYFLSNFIWSIDIKTAK 117
>gnl|CDD|178970 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.
Length = 505
Score = 29.5 bits (67), Expect = 1.5
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 150 IFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLG--------L 201
+ S L+ Q+ L+ +W +F +G+SW+++ + F G L
Sbjct: 33 LLSLAGL----LWLLLGASPKQAALIGFLWGFGYFGSGLSWIYVSIHTFGGMPAWLAPLL 88
Query: 202 MSLFIAY 208
+ L AY
Sbjct: 89 VLLLAAY 95
>gnl|CDD|150299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 28.7 bits (65), Expect = 2.3
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 12 EWFWTVDWFSLIAFLFLLGLGLMLSFASSPS-VAEKLGLENFYFVKRHALFLIPSVIIMI 70
+ ++ + LL L +L F + S L N LFL+ +++++
Sbjct: 358 LHLKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLL---TLLFLLLYLLLLL 414
Query: 71 SFSLFSPKNVKNTAFILLFLSL 92
F + +LL + L
Sbjct: 415 LFLKKQIRKKLVIILLLLVVVL 436
Score = 28.7 bits (65), Expect = 2.5
Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 31/183 (16%)
Query: 46 KLGLENFYFVKRHALFLI--PSVIIMISFSLFSPKNVKNTAFI-------LLFLSLIAMF 96
KL + +F F + L I + +++ F K +K + L LS
Sbjct: 264 KLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLILSFYLPP 323
Query: 97 LTLFWGV---EIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSF 153
L L W + R+ ++ F + AE + H + +
Sbjct: 324 LDLVWHGFQAPVWFPYRFSFL--------------FSFLILLLAAEALLHLKQLKKLKIL 369
Query: 154 ILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPH 213
I +++ L I S S + +T L+++++ L+ LF+ Q
Sbjct: 370 ISILLLVLLFILVFLLNLSKHYSFLTQTNLLLT---LLFLLLYLL--LLLLFLKKQIRKK 424
Query: 214 VAI 216
+ I
Sbjct: 425 LVI 427
>gnl|CDD|163109 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. Colanic acid biosynthesis utilizes
a glucose-undecaprenyl carrier, knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 28.7 bits (65), Expect = 2.3
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 29/108 (26%)
Query: 128 SFIIVSAWFFAEQIRH-----PEIPGNIFSFILFGIVIALLIAQ------PDFGQSILVS 176
+I+ A A +R P+I + +L ++ LLI +S L
Sbjct: 4 LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLL-FLLIFALFGLYRSWRRRSRLRE 62
Query: 177 LIWDCMF-----------------FITGISWLWIVVFAFLGLMSLFIA 207
++ + S LW++++ L L L +
Sbjct: 63 MLLRILLAWTLTFLILALLAFLLKTGGEFSRLWLLLWFLLALALLLLG 110
>gnl|CDD|178290 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 28.2 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 103 VEIKGAKRWLYIAGTSVQPSEFMKPSFIIVSAWFFAEQIRHPEI 146
EIK L+ AGT S W AE IRHP+I
Sbjct: 296 TEIKALLLNLFTAGTDTTSS---------TVEWAIAELIRHPDI 330
>gnl|CDD|183807 PRK12875, ubiA, prenyltransferase; Reviewed.
Length = 282
Score = 28.1 bits (63), Expect = 3.7
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 19/56 (33%)
Query: 111 WLYIAGTSV--------QPSEFMKPSFIIVSAWFFAEQIRHPEIPGNIFSFILFGI 158
WLY+AG V ++ P+ + + A+F P N+F L+G+
Sbjct: 20 WLYLAGPVVVGVAYAADSVADLFSPAAVALFAYFL--------FPANVF---LYGV 64
>gnl|CDD|163048 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs.
Length = 764
Score = 28.1 bits (63), Expect = 3.9
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 22 LIAFLFLLGLGLMLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVK 81
+ G + + +P +E +L + I S K
Sbjct: 93 FLEAAVYAIFGYLQNKLVTPLDFILSIVEA-------SLSFVLYYIFNYSIPCLKNGRTK 145
Query: 82 NTA---FILLFLSLIAMFLTLFWGVEIKGA 108
+ I+ + LIA LT G+ I G
Sbjct: 146 HLLTNEEIVSLIILIASVLTGLRGLSIWGL 175
>gnl|CDD|150204 pfam09451, ATG27, Autophagy-related protein 27.
Length = 265
Score = 28.2 bits (63), Expect = 4.1
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 273 FGIIFCIFILCIFAFIVVRSFL----YS-----LVESNDFIR 305
F +F L + +++ S+L Y LV DF+R
Sbjct: 200 FTWLFIYLFLFVAIYLIGGSWLNYNRYGARGFDLVPHGDFLR 241
>gnl|CDD|151046 pfam10483, Hap2_elong, Histone acetylation protein 2. Hap2 is one
of three histone acetyltransferases proteins that, in
yeasts, are found associated with elongating forms of
RNA polymerase II (Elongator). The Haps can be isolated
in two forms, as a six-subunit complex with Elongator
and as a complex of the three proteins on their own. The
role of the Hap complex in transcription is still
speculative, being possibly to keep the HAT activity of
free Elongator in check, allowing histone acetylation
only in the presence of a transcribing polymerase, or
the interaction with Haps might render Elongator
susceptible to modifications thereby altering its
activity.
Length = 286
Score = 28.1 bits (63), Expect = 4.3
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 355 GYLLALTCRRPEKRAYEEDFMHTSISHSSGS 385
G +L L RR R E F + +H
Sbjct: 188 GIVLELENRRKSGRGLTETFFLSPATHEYEQ 218
>gnl|CDD|162116 TIGR00930, 2a30, K-Cl cotransporter.
Length = 953
Score = 28.1 bits (63), Expect = 4.3
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 149 NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGIS 189
NI+ ILF + ++ ++ Q G S+L+ L+ C+ ITG+S
Sbjct: 91 NIWGVILF-LRLSWIVGQAGIGLSLLIILLCCCVTTITGLS 130
>gnl|CDD|162214 TIGR01129, secD, protein-export membrane protein SecD. SecD from
Mycobacterium tuberculosis has a long Pro-rich insert.
Length = 397
Score = 27.6 bits (62), Expect = 5.7
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 159 VIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVA 215
+ A LI ++ +++ +F + L I + L ++S F A T+P +A
Sbjct: 251 IKAGLIG---LVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIA 304
>gnl|CDD|180571 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.
Length = 490
Score = 27.6 bits (62), Expect = 6.0
Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 149 NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLM-SLFIA 207
+ + + + L+ PD G+ FFI ++ ++ + +G + SL+
Sbjct: 35 VLGITLTLILALWLVFTVPDAGEI----FAAGLWFFIDDLNVFFLALIGVVGFLTSLY-- 88
Query: 208 YQTMPHVAIRINH 220
++ ++ + H
Sbjct: 89 --SIGYMRHEVEH 99
>gnl|CDD|151683 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some
members in this family of proteins with unknown function
are annotated as membrane proteins. This cannot be
confirmed.
Length = 168
Score = 27.2 bits (61), Expect = 8.0
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 61 FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFW 101
F +P ++++ L ++ A + + + ++ M +
Sbjct: 80 FFMPVALVVLVLMLVPNPALQLIASLAMLVLILVMVIDGIL 120
>gnl|CDD|182926 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 27.0 bits (60), Expect = 9.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 156 FGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWI 193
F V+ LL + D Q+++V+ +W F G+ +L+I
Sbjct: 425 FAFVLVLLTLEDDTRQALIVTPLW---FIALGLGYLFI 459
>gnl|CDD|163055 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter.
Length = 382
Score = 26.9 bits (60), Expect = 9.3
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 53 YFVKRHAL-FLIPSVIIMISFSLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAK 109
+ R L FL + ILLFL+++ W ++I G K
Sbjct: 67 KIIARKGLPFLFKRLRKRPGI----------LIGILLFLAIVYFLSNFIWKIDITGVK 114
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.332 0.145 0.459
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,608,267
Number of extensions: 457721
Number of successful extensions: 2000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1936
Number of HSP's successfully gapped: 207
Length of query: 385
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 290
Effective length of database: 3,941,713
Effective search space: 1143096770
Effective search space used: 1143096770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.3 bits)