RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] (385 letters) >1g5m_A Protein (apoptosis regulator BCL-2 with putative flexible loop replaced with A portion...; NMR {Homo sapiens} (A:) Length = 166 Score = 32.7 bits (74), Expect = 0.094 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 8/85 (9%) Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219 + +Q + F G++W IV F F G+M + + M + I Sbjct: 74 MSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIA 133 Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243 +MT + I +GGW Sbjct: 134 LWMT----EYLNRHLHTWIQDNGGW 154 >1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} (A:) Length = 218 Score = 32.3 bits (73), Expect = 0.10 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240 F G++W IV F+F G + + + M + RI +M ++ D I + Sbjct: 130 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMA----TYLNDHLEPWIQEN 185 Query: 241 GGW 243 GGW Sbjct: 186 GGW 188 >2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 2jby_B 2voh_B* (A:) Length = 171 Score = 31.1 bits (70), Expect = 0.23 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 9/73 (12%) Query: 176 SLIWDCMF--FITGISWLWIV-VFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQID 232 F +GI+W +V + F ++L + + ++ F+ F + Sbjct: 94 EYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVV----DFXLH 149 Query: 233 SSRDAII--HGGW 243 I GGW Sbjct: 150 HCIARWIAQRGGW 162 >1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR {Homo sapiens} (A:) Length = 178 Score = 29.9 bits (67), Expect = 0.52 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240 F G +W +V F F + + M + ++ +M ++ D I Sbjct: 85 LFQGGPNWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMV----AYLETRLADWIHSS 140 Query: 241 GGW 243 GGW Sbjct: 141 GGW 143 >2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A* (A:) Length = 144 Score = 29.9 bits (67), Expect = 0.59 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 183 FFITGISWLWIV-VFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240 F G++W IV F F G+M + + M + I +MT + I + Sbjct: 75 LFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMT----EYLNRHLHTWIQDN 130 Query: 241 GGW 243 GGW Sbjct: 131 GGW 133 >1pq1_A Apoptosis regulator BCL-X; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus} (A:) Length = 196 Score = 29.7 bits (66), Expect = 0.60 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%) Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219 L +Q + F G++W IV F+F G + + + M + RI Sbjct: 108 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 167 Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243 +M ++ D I +GGW Sbjct: 168 SWMA----TYLNDHLEPWIQENGGW 188 >3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane; 1.78A {Homo sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A* (A:29-158) Length = 130 Score = 28.8 bits (64), Expect = 1.1 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%) Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIV-VFAFLGLMSLFIAYQTMPHVAIRIN 219 L +Q + F G++W IV F+F G + + + M + RI Sbjct: 29 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 88 Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243 +M ++ D I +GGW Sbjct: 89 AWMA----TYLNDHLEPWIQENGGW 109 >1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} (A:1-78,A:221-505) Length = 363 Score = 27.5 bits (61), Expect = 2.7 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGE---GVIKRVIPDSHTDFVFSVAAE 271 +R++HF G +++ + ++G W K PG+ + P + AE Sbjct: 160 FLRLDHFR-GFEAYWEVPYGEETAVNGRWV-KAPGKTLFKKLLSYFPKNP------FIAE 211 Query: 272 EFGII 276 + G I Sbjct: 212 DLGFI 216 >1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus aquaticus} (A:1-61,A:208-500) Length = 354 Score = 27.5 bits (61), Expect = 2.9 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFG 274 +RI+HF G ++I +S + G W K PGE + +++ V AE+ G Sbjct: 143 LVRIDHFR-GFEAYWEIPASCPTAVEGRWV-KAPGEKLFQKIQEVFGEV---PVLAEDLG 197 Query: 275 II 276 +I Sbjct: 198 VI 199 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.4 bits (61), Expect = 3.2 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 9/32 (28%) Query: 287 FIVVRSFLYSLVESNDFIRMAIFGLALQIALQ 318 + + S L +V F R G+ +Q+A+ Sbjct: 5 VMSIES-LVEVV----FYR----GMTMQVAVP 27 >2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} (A:) Length = 204 Score = 26.9 bits (59), Expect = 4.6 Identities = 4/67 (5%), Positives = 20/67 (29%), Gaps = 6/67 (8%) Query: 182 MFFITGISWLWIVV-FAFLGLMSLFIAYQT-MPHVAIRINHFMTGVGDSFQIDSSRDAII 239 + +S+ ++ +F G ++ + + + + + + + Sbjct: 113 QTDQSPMSYGRLIGLISFGGFVAAKMMESVELQGQVRNLFVYTS---LFIKTRIRNNWKE 169 Query: 240 -HGGWFG 245 + W Sbjct: 170 HNRSWDD 176 >2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A (A:1-87,A:186-312,A:539-576) Length = 252 Score = 26.5 bits (58), Expect = 5.4 Identities = 3/33 (9%), Positives = 13/33 (39%) Query: 275 IIFCIFILCIFAFIVVRSFLYSLVESNDFIRMA 307 + ++ +F I+ R ++ + + + Sbjct: 14 NLLFSIVILLFMTIIGRLLYMQVLNKDFYEKKL 46 >1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha); helical protein; NMR {Homo sapiens} (A:) Length = 192 Score = 26.5 bits (58), Expect = 6.8 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 13/107 (12%) Query: 178 IWDCMFFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRD 236 + MF +W +V F F + L +P + I + F + Sbjct: 95 VAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTL----DFLRERLLG 150 Query: 237 AII-HGGWFGKGPGEGVIKRV-IPDSHTDFVFSVAAEEFGIIFCIFI 281 I GGW +G++ P T +F + + Sbjct: 151 WIQDQGGW------DGLLSYFGTPTWQTVTIFVAGVLTASLTIWKKM 191 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:1-49,A:92-251) Length = 209 Score = 25.7 bits (56), Expect = 9.5 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 5/101 (4%) Query: 255 RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQ 314 + I + D F++A EE+ + IF + + Y+++ D + F Sbjct: 14 KYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWINNNLNYTIISKEDENKAFDFKSFST 73 Query: 315 IALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMG 355 + +GV + G G Sbjct: 74 PVINTLAQLGVKAEFTGRND-----LEIDGKKFCGNAQAYI 109 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.332 0.145 0.459 Gapped Lambda K H 0.267 0.0624 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,017,573 Number of extensions: 134738 Number of successful extensions: 440 Number of sequences better than 10.0: 1 Number of HSP's gapped: 431 Number of HSP's successfully gapped: 75 Length of query: 385 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 295 Effective length of database: 1,913,599 Effective search space: 564511705 Effective search space used: 564511705 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 55 (25.2 bits)