RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
(385 letters)
>1g5m_A Protein (apoptosis regulator BCL-2 with putative flexible
loop replaced with A portion...; NMR {Homo sapiens} (A:)
Length = 166
Score = 32.7 bits (74), Expect = 0.094
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219
+ +Q + F G++W IV F F G+M + + M + I
Sbjct: 74 MSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIA 133
Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243
+MT + I +GGW
Sbjct: 134 LWMT----EYLNRHLHTWIQDNGGW 154
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A
{Homo sapiens} (A:)
Length = 218
Score = 32.3 bits (73), Expect = 0.10
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
F G++W IV F+F G + + + M + RI +M ++ D I +
Sbjct: 130 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMA----TYLNDHLEPWIQEN 185
Query: 241 GGW 243
GGW
Sbjct: 186 GGW 188
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB:
2imt_A 2jcn_A 2yv6_A 2jby_B 2voh_B* (A:)
Length = 171
Score = 31.1 bits (70), Expect = 0.23
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 176 SLIWDCMF--FITGISWLWIV-VFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQID 232
F +GI+W +V + F ++L + + ++ F+ F +
Sbjct: 94 EYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVV----DFXLH 149
Query: 233 SSRDAII--HGGW 243
I GGW
Sbjct: 150 HCIARWIAQRGGW 162
>1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis;
NMR {Homo sapiens} (A:)
Length = 178
Score = 29.9 bits (67), Expect = 0.52
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
F G +W +V F F + + M + ++ +M ++ D I
Sbjct: 85 LFQGGPNWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMV----AYLETRLADWIHSS 140
Query: 241 GGW 243
GGW
Sbjct: 141 GGW 143
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo
sapiens} PDB: 2o2f_A* (A:)
Length = 144
Score = 29.9 bits (67), Expect = 0.59
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 183 FFITGISWLWIV-VFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
F G++W IV F F G+M + + M + I +MT + I +
Sbjct: 75 LFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMT----EYLNRHLHTWIQDN 130
Query: 241 GGW 243
GGW
Sbjct: 131 GGW 133
>1pq1_A Apoptosis regulator BCL-X; BCL-XL/BIM, apoptosis; 1.65A {Mus
musculus} (A:)
Length = 196
Score = 29.7 bits (66), Expect = 0.60
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219
L +Q + F G++W IV F+F G + + + M + RI
Sbjct: 108 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 167
Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243
+M ++ D I +GGW
Sbjct: 168 SWMA----TYLNDHLEPWIQENGGW 188
>3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein
complex, apoptosis, alternative splicing, membrane,
mitochondrion, nucleus, transmembrane; 1.78A {Homo
sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A*
(A:29-158)
Length = 130
Score = 28.8 bits (64), Expect = 1.1
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIV-VFAFLGLMSLFIAYQTMPHVAIRIN 219
L +Q + F G++W IV F+F G + + + M + RI
Sbjct: 29 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 88
Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243
+M ++ D I +GGW
Sbjct: 89 AWMA----TYLNDHLEPWIQENGGW 109
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A
{Aquifex aeolicus} (A:1-78,A:221-505)
Length = 363
Score = 27.5 bits (61), Expect = 2.7
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGE---GVIKRVIPDSHTDFVFSVAAE 271
+R++HF G +++ + ++G W K PG+ + P + AE
Sbjct: 160 FLRLDHFR-GFEAYWEVPYGEETAVNGRWV-KAPGKTLFKKLLSYFPKNP------FIAE 211
Query: 272 EFGII 276
+ G I
Sbjct: 212 DLGFI 216
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus
aquaticus} (A:1-61,A:208-500)
Length = 354
Score = 27.5 bits (61), Expect = 2.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFG 274
+RI+HF G ++I +S + G W K PGE + +++ V AE+ G
Sbjct: 143 LVRIDHFR-GFEAYWEIPASCPTAVEGRWV-KAPGEKLFQKIQEVFGEV---PVLAEDLG 197
Query: 275 II 276
+I
Sbjct: 198 VI 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 27.4 bits (61), Expect = 3.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 287 FIVVRSFLYSLVESNDFIRMAIFGLALQIALQ 318
+ + S L +V F R G+ +Q+A+
Sbjct: 5 VMSIES-LVEVV----FYR----GMTMQVAVP 27
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A
{Caenorhabditis elegans} (A:)
Length = 204
Score = 26.9 bits (59), Expect = 4.6
Identities = 4/67 (5%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 182 MFFITGISWLWIVV-FAFLGLMSLFIAYQT-MPHVAIRINHFMTGVGDSFQIDSSRDAII 239
+ +S+ ++ +F G ++ + + + + + + +
Sbjct: 113 QTDQSPMSYGRLIGLISFGGFVAAKMMESVELQGQVRNLFVYTS---LFIKTRIRNNWKE 169
Query: 240 -HGGWFG 245
+ W
Sbjct: 170 HNRSWDD 176
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis,
transmembrane, antibiotic resistance, cell shape,
peptidoglycan, cell membrane; 2.18A {Streptococcus
pneumoniae} PDB: 2wae_A 2waf_A
(A:1-87,A:186-312,A:539-576)
Length = 252
Score = 26.5 bits (58), Expect = 5.4
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 275 IIFCIFILCIFAFIVVRSFLYSLVESNDFIRMA 307
+ ++ +F I+ R ++ + + +
Sbjct: 14 NLLFSIVILLFMTIIGRLLYMQVLNKDFYEKKL 46
>1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha);
helical protein; NMR {Homo sapiens} (A:)
Length = 192
Score = 26.5 bits (58), Expect = 6.8
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 178 IWDCMFFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRD 236
+ MF +W +V F F + L +P + I + F +
Sbjct: 95 VAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTL----DFLRERLLG 150
Query: 237 AII-HGGWFGKGPGEGVIKRV-IPDSHTDFVFSVAAEEFGIIFCIFI 281
I GGW +G++ P T +F + +
Sbjct: 151 WIQDQGGW------DGLLSYFGTPTWQTVTIFVAGVLTASLTIWKKM 191
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4}
(A:1-49,A:92-251)
Length = 209
Score = 25.7 bits (56), Expect = 9.5
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 5/101 (4%)
Query: 255 RVIPDSHTDFVFSVAAEEFGIIFCIFILCIFAFIVVRSFLYSLVESNDFIRMAIFGLALQ 314
+ I + D F++A EE+ + IF + + Y+++ D + F
Sbjct: 14 KYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWINNNLNYTIISKEDENKAFDFKSFST 73
Query: 315 IALQAFINIGVNLHLLPTKGMTMPAISYGGSSILGICITMG 355
+ +GV + G G
Sbjct: 74 PVINTLAQLGVKAEFTGRND-----LEIDGKKFCGNAQAYI 109
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.332 0.145 0.459
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,017,573
Number of extensions: 134738
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 75
Length of query: 385
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 295
Effective length of database: 1,913,599
Effective search space: 564511705
Effective search space used: 564511705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.2 bits)