RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
         (385 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 54/336 (16%), Positives = 93/336 (27%), Gaps = 125/336 (37%)

Query: 114 IAGTSVQP------S-EFMKPSFIIVSA-WFFAEQIRHPEIPGNIFSFILFGIVIALLIA 165
           +   S +P      S E      ++ +A +F A Q++        F+ IL         A
Sbjct: 1   MDAYSTRPLTLSHGSLEH---VLLVPTASFFIASQLQ------EQFNKILPEPTEGF--A 49

Query: 166 QPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGV 225
             D   +    L                 V  FLG    +++    P    ++  F   +
Sbjct: 50  ADDEPTTP-AEL-----------------VGKFLG----YVSSLVEPS---KVGQFDQVL 84

Query: 226 G---DSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFIL 282
                 F+        IH           +  +++ ++ T        +   +I      
Sbjct: 85  NLCLTEFENCYLEGNDIHA----------LAAKLLQENDT-----TLVKTKELIKNYITA 129

Query: 283 CIFA----FIVVRSFLYSLVESNDFIRMAIFG-----------LA-LQIALQAFIN--IG 324
            I A         S L+  V   +   +AIFG           L  L       +   I 
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189

Query: 325 V------NLHLLP-------TKGM----------TMPAISYGGSSILGICITM---GYLL 358
                   L           T+G+            P   Y    +L I I+    G ++
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCPLIG-VI 244

Query: 359 AL-----TCR----RP-EKRAYEEDFMHTSISHSSG 384
            L     T +     P E R     ++  +  HS G
Sbjct: 245 QLAHYVVTAKLLGFTPGELR----SYLKGATGHSQG 276



 Score = 36.5 bits (84), Expect = 0.011
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 24/64 (37%)

Query: 157 GIVIALLIAQPDFGQSILVSLIWDCMFF---ITGISWL-WIVVFAFLGLMSLFIAYQTMP 212
           G+V A+ IA+ D   S      W+  FF      I+ L +I      G+      Y+  P
Sbjct: 276 GLVTAVAIAETD---S------WES-FFVSVRKAITVLFFI------GVRC----YEAYP 315

Query: 213 HVAI 216
           + ++
Sbjct: 316 NTSL 319


>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing,
           cytoplasm, membrane, mitochondrion, transmembrane; 1.64A
           {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A
           3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A 2pon_B
          Length = 197

 Score = 31.7 bits (71), Expect = 0.25
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219
           L +Q               +   F  G++W  IV  F+F G + +    + M  +  RI 
Sbjct: 109 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 168

Query: 220 HFMTGVGDSFQIDSSRDAII-HGGWFG 245
            +M     ++  D     I  +GGW  
Sbjct: 169 SWMA----TYLNDHLEPWIQENGGWDT 191


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.60
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%)

Query: 29 LGLGLMLSFA--SSPSVAEKLGLE 50
          L   L L +A  S+P++A K  +E
Sbjct: 25 LQASLKL-YADDSAPALAIKATME 47


>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane
           protein, P-type ATPase, HAD fold, hydrolase; HET: ADP
           TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1
           c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A*
           1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A*
           2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A*
           3fgo_A* 3fpb_A* 3fps_A* ...
          Length = 994

 Score = 30.3 bits (67), Expect = 0.81
 Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 5/140 (3%)

Query: 73  SLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIV 132
            L S         I  ++    +    +W +  +      Y   T         P F  +
Sbjct: 827 PLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGL 886

Query: 133 SAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLW 192
               F         P  +   +L  I +   +      QS++    W  ++ +  I    
Sbjct: 887 DCEIFE-----APEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSM 941

Query: 193 IVVFAFLGLMSLFIAYQTMP 212
            + F  L +  L + ++   
Sbjct: 942 SLHFLILYVDPLPMIFKLKA 961


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
           binding, haloacid dehydrogenease superfamily, phosphate
           analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
           PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A
          Length = 1028

 Score = 29.8 bits (66), Expect = 1.2
 Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 22/200 (11%)

Query: 128 SFIIVSAWFFAEQIRHPEIPG-----NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCM 182
             I     F    +  P         ++ + ++  I +A   A+ D  +    +   D +
Sbjct: 790 PEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKL 849

Query: 183 FFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIHGG 242
                IS  +  +     L   F  +  +          +           S      G 
Sbjct: 850 VNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQ 909

Query: 243 WFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILC-IFAFIVVRSFLYSLVESN 301
            +     +                 V        F   ++      I+ ++   S+ +  
Sbjct: 910 QWTYEQRK----------------IVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQG 953

Query: 302 DFIRMAIFGLALQIALQAFI 321
              ++ IFGL  + AL AF+
Sbjct: 954 MKNKILIFGLFEETALAAFL 973


>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo
           sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A
           1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A*
           1ysn_A* 2o1y_A* 2yxj_A* 1g5j_A
          Length = 218

 Score = 29.2 bits (65), Expect = 1.6
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219
           L +Q               +   F  G++W  IV  F+F G + +    + M  +  RI 
Sbjct: 108 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 167

Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243
            +M     ++  D     I  +GGW
Sbjct: 168 AWMA----TYLNDHLEPWIQENGGW 188


>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
           alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus
           aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A
           2owc_A* 2oww_A* 2owx_A*
          Length = 500

 Score = 29.0 bits (65), Expect = 2.0
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGE---GVIKRVIPDSHTDFVFSVAAE 271
            +RI+HF  G    ++I +S    + G W  K PGE     I+ V  +        V AE
Sbjct: 289 LVRIDHFR-GFEAYWEIPASCPTAVEGRWV-KAPGEKLFQKIQEVFGEVP------VLAE 340

Query: 272 EFGII 276
           + G+I
Sbjct: 341 DLGVI 345


>1pq1_A Apoptosis regulator BCL-X; BCL-XL/BIM, apoptosis; 1.65A {Mus
           musculus} SCOP: f.1.4.1 PDB: 1pq0_A 2bzw_A 1af3_A 2pon_B
           2p1l_A
          Length = 196

 Score = 28.4 bits (63), Expect = 2.5
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
            F  G++W  IV  F+F G + +    + M  +  RI  +M     ++  D     I  +
Sbjct: 130 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMA----TYLNDHLEPWIQEN 185

Query: 241 GGW 243
           GGW
Sbjct: 186 GGW 188


>3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex,
           apoptosis, alternative splicing, membrane,
           mitochondrion, nucleus, transmembrane; 1.78A {Homo
           sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A*
          Length = 158

 Score = 28.7 bits (64), Expect = 2.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
            F  G++W  IV  F+F G + +    + M  +  RI  +M     ++  D     I  +
Sbjct: 79  LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMA----TYLNDHLEPWIQEN 134

Query: 241 GGW 243
           GGW
Sbjct: 135 GGW 137


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 28.1 bits (62), Expect = 3.5
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 34/235 (14%)

Query: 149 NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAY 208
            +++++++ I +++ +         L   I      +     ++I +FA +  +++    
Sbjct: 687 RMYAYVVYRIALSIHLE------IFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDN 740

Query: 209 QTM-----PHVAIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTD 263
                        ++      +G    + +    I     + +G                
Sbjct: 741 APYSQTPVKWNLPKLWGMSVLLG---VVLAVGTWITVTTMYAQG-------------ENG 784

Query: 264 FVFSVAAEEFGIIFCIFILCIFAFI-VVRSFLYSLVESNDFIRMAIFGLALQIALQAFIN 322
            +         ++F    L     I + R+       S+         + L   L     
Sbjct: 785 GIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW--SSIPSWQLSGAIFLVDILATCFT 842

Query: 323 IGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL----ALTCRRPEKRAYEED 373
           I        T  + +  I      I  I   + Y+L            K      
Sbjct: 843 IWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQDSVGFDNLMHGKSPKGNQ 897


>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
           modifications, jumonji demethylase, mental retardation,
           metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
           sapiens}
          Length = 447

 Score = 28.0 bits (62), Expect = 4.1
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 34  MLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLI 93
           + +   +P +  KL      +     +F  P+V     + L S ++   T F       I
Sbjct: 200 LSNLVETPKIVRKLSWVENLWP-EECVFERPNVQ---KYCLMSVRD-SYTDF------HI 248

Query: 94  AMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIV-SAWFFAEQIRHP 144
               T  W   +KG K +  I  T+   + F   S     +  FF +Q+   
Sbjct: 249 DFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKC 300


>1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR
           {Homo sapiens} SCOP: f.1.4.1 PDB: 1zy3_A 1o0l_A
          Length = 178

 Score = 27.2 bits (60), Expect = 5.8
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
            F  G +W  +V  F F   +      + M  +  ++  +M     ++      D I   
Sbjct: 85  LFQGGPNWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMV----AYLETRLADWIHSS 140

Query: 241 GGW 243
           GGW
Sbjct: 141 GGW 143


>3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose,
           tetradeoxysuga micromonospora chalcea, TCAB9, SUGA
           methylation; HET: SAM TMP; 1.50A {Micromonospora
           chalcea} PDB: 3ndj_A*
          Length = 416

 Score = 26.8 bits (58), Expect = 8.0
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 103 VEIKGAKRWLYIAGTS---VQPSEF--MKPSFIIVSAWFFAEQIR 142
            +    K+     G        S F    P + ++ AW  AE+I 
Sbjct: 349 YDTTPDKQNRLTPGAHIPVRPASAFSDPYPDYALLFAWNHAEEIM 393


>2nl9_A Fusion protein consisting of induced myeloid leukemia cell
           differentiation protein...; apoptosis, MCL-1, BIM; HET:
           MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A
           2pqk_A 1wsx_A 2jm6_B 2roc_A 2rod_A
          Length = 157

 Score = 26.5 bits (58), Expect = 9.7
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 180 DCMFFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAI 238
             +F     +W  IV   +F   ++  +           +   +T       + + RD +
Sbjct: 81  IHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESIT----DVLVRTKRDWL 136

Query: 239 I-HGGW 243
           +   GW
Sbjct: 137 VKQRGW 142


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.332    0.145    0.459 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,443,071
Number of extensions: 159035
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 78
Length of query: 385
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 291
Effective length of database: 3,414,294
Effective search space: 993559554
Effective search space used: 993559554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.8 bits)