RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62] (385 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.4 bits (89), Expect = 0.003 Identities = 54/336 (16%), Positives = 93/336 (27%), Gaps = 125/336 (37%) Query: 114 IAGTSVQP------S-EFMKPSFIIVSA-WFFAEQIRHPEIPGNIFSFILFGIVIALLIA 165 + S +P S E ++ +A +F A Q++ F+ IL A Sbjct: 1 MDAYSTRPLTLSHGSLEH---VLLVPTASFFIASQLQ------EQFNKILPEPTEGF--A 49 Query: 166 QPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGV 225 D + L V FLG +++ P ++ F + Sbjct: 50 ADDEPTTP-AEL-----------------VGKFLG----YVSSLVEPS---KVGQFDQVL 84 Query: 226 G---DSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFIL 282 F+ IH + +++ ++ T + +I Sbjct: 85 NLCLTEFENCYLEGNDIHA----------LAAKLLQENDT-----TLVKTKELIKNYITA 129 Query: 283 CIFA----FIVVRSFLYSLVESNDFIRMAIFG-----------LA-LQIALQAFIN--IG 324 I A S L+ V + +AIFG L L + I Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189 Query: 325 V------NLHLLP-------TKGM----------TMPAISYGGSSILGICITM---GYLL 358 L T+G+ P Y +L I I+ G ++ Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCPLIG-VI 244 Query: 359 AL-----TCR----RP-EKRAYEEDFMHTSISHSSG 384 L T + P E R ++ + HS G Sbjct: 245 QLAHYVVTAKLLGFTPGELR----SYLKGATGHSQG 276 Score = 36.5 bits (84), Expect = 0.011 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 24/64 (37%) Query: 157 GIVIALLIAQPDFGQSILVSLIWDCMFF---ITGISWL-WIVVFAFLGLMSLFIAYQTMP 212 G+V A+ IA+ D S W+ FF I+ L +I G+ Y+ P Sbjct: 276 GLVTAVAIAETD---S------WES-FFVSVRKAITVLFFI------GVRC----YEAYP 315 Query: 213 HVAI 216 + ++ Sbjct: 316 NTSL 319 >3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A 2pon_B Length = 197 Score = 31.7 bits (71), Expect = 0.25 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%) Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219 L +Q + F G++W IV F+F G + + + M + RI Sbjct: 109 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 168 Query: 220 HFMTGVGDSFQIDSSRDAII-HGGWFG 245 +M ++ D I +GGW Sbjct: 169 SWMA----TYLNDHLEPWIQENGGWDT 191 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.60 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%) Query: 29 LGLGLMLSFA--SSPSVAEKLGLE 50 L L L +A S+P++A K +E Sbjct: 25 LQASLKL-YADDSAPALAIKATME 47 >1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1 c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A* 1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A* 2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A* 3fgo_A* 3fpb_A* 3fps_A* ... Length = 994 Score = 30.3 bits (67), Expect = 0.81 Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 5/140 (3%) Query: 73 SLFSPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIV 132 L S I ++ + +W + + Y T P F + Sbjct: 827 PLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGL 886 Query: 133 SAWFFAEQIRHPEIPGNIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLW 192 F P + +L I + + QS++ W ++ + I Sbjct: 887 DCEIFE-----APEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSM 941 Query: 193 IVVFAFLGLMSLFIAYQTMP 212 + F L + L + ++ Sbjct: 942 SLHFLILYVDPLPMIFKLKA 961 >2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Score = 29.8 bits (66), Expect = 1.2 Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 22/200 (11%) Query: 128 SFIIVSAWFFAEQIRHPEIPG-----NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCM 182 I F + P ++ + ++ I +A A+ D + + D + Sbjct: 790 PEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKL 849 Query: 183 FFITGISWLWIVVFAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAIIHGG 242 IS + + L F + + + S G Sbjct: 850 VNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQ 909 Query: 243 WFGKGPGEGVIKRVIPDSHTDFVFSVAAEEFGIIFCIFILC-IFAFIVVRSFLYSLVESN 301 + + V F ++ I+ ++ S+ + Sbjct: 910 QWTYEQRK----------------IVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQG 953 Query: 302 DFIRMAIFGLALQIALQAFI 321 ++ IFGL + AL AF+ Sbjct: 954 MKNKILIFGLFEETALAAFL 973 >1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 1g5j_A Length = 218 Score = 29.2 bits (65), Expect = 1.6 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%) Query: 163 LIAQPDFGQSILVSLIWDCM--FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRIN 219 L +Q + F G++W IV F+F G + + + M + RI Sbjct: 108 LTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 167 Query: 220 HFMTGVGDSFQIDSSRDAII-HGGW 243 +M ++ D I +GGW Sbjct: 168 AWMA----TYLNDHLEPWIQENGGW 188 >1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* Length = 500 Score = 29.0 bits (65), Expect = 2.0 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%) Query: 215 AIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGE---GVIKRVIPDSHTDFVFSVAAE 271 +RI+HF G ++I +S + G W K PGE I+ V + V AE Sbjct: 289 LVRIDHFR-GFEAYWEIPASCPTAVEGRWV-KAPGEKLFQKIQEVFGEVP------VLAE 340 Query: 272 EFGII 276 + G+I Sbjct: 341 DLGVI 345 >1pq1_A Apoptosis regulator BCL-X; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus} SCOP: f.1.4.1 PDB: 1pq0_A 2bzw_A 1af3_A 2pon_B 2p1l_A Length = 196 Score = 28.4 bits (63), Expect = 2.5 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240 F G++W IV F+F G + + + M + RI +M ++ D I + Sbjct: 130 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMA----TYLNDHLEPWIQEN 185 Query: 241 GGW 243 GGW Sbjct: 186 GGW 188 >3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane; 1.78A {Homo sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A* Length = 158 Score = 28.7 bits (64), Expect = 2.6 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240 F G++W IV F+F G + + + M + RI +M ++ D I + Sbjct: 79 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMA----TYLNDHLEPWIQEN 134 Query: 241 GGW 243 GGW Sbjct: 135 GGW 137 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Score = 28.1 bits (62), Expect = 3.5 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 34/235 (14%) Query: 149 NIFSFILFGIVIALLIAQPDFGQSILVSLIWDCMFFITGISWLWIVVFAFLGLMSLFIAY 208 +++++++ I +++ + L I + ++I +FA + +++ Sbjct: 687 RMYAYVVYRIALSIHLE------IFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDN 740 Query: 209 QTM-----PHVAIRINHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTD 263 ++ +G + + I + +G Sbjct: 741 APYSQTPVKWNLPKLWGMSVLLG---VVLAVGTWITVTTMYAQG-------------ENG 784 Query: 264 FVFSVAAEEFGIIFCIFILCIFAFI-VVRSFLYSLVESNDFIRMAIFGLALQIALQAFIN 322 + ++F L I + R+ S+ + L L Sbjct: 785 GIVQNFGNMDEVLFLQISLTENWLIFITRANGPFW--SSIPSWQLSGAIFLVDILATCFT 842 Query: 323 IGVNLHLLPTKGMTMPAISYGGSSILGICITMGYLL----ALTCRRPEKRAYEED 373 I T + + I I I + Y+L K Sbjct: 843 IWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQDSVGFDNLMHGKSPKGNQ 897 >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Score = 28.0 bits (62), Expect = 4.1 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%) Query: 34 MLSFASSPSVAEKLGLENFYFVKRHALFLIPSVIIMISFSLFSPKNVKNTAFILLFLSLI 93 + + +P + KL + +F P+V + L S ++ T F I Sbjct: 200 LSNLVETPKIVRKLSWVENLWP-EECVFERPNVQ---KYCLMSVRD-SYTDF------HI 248 Query: 94 AMFLTLFWGVEIKGAKRWLYIAGTSVQPSEFMKPSFIIV-SAWFFAEQIRHP 144 T W +KG K + I T+ + F S + FF +Q+ Sbjct: 249 DFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKC 300 >1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 1zy3_A 1o0l_A Length = 178 Score = 27.2 bits (60), Expect = 5.8 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240 F G +W +V F F + + M + ++ +M ++ D I Sbjct: 85 LFQGGPNWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMV----AYLETRLADWIHSS 140 Query: 241 GGW 243 GGW Sbjct: 141 GGW 143 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Length = 416 Score = 26.8 bits (58), Expect = 8.0 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%) Query: 103 VEIKGAKRWLYIAGTS---VQPSEF--MKPSFIIVSAWFFAEQIR 142 + K+ G S F P + ++ AW AE+I Sbjct: 349 YDTTPDKQNRLTPGAHIPVRPASAFSDPYPDYALLFAWNHAEEIM 393 >2nl9_A Fusion protein consisting of induced myeloid leukemia cell differentiation protein...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 2pqk_A 1wsx_A 2jm6_B 2roc_A 2rod_A Length = 157 Score = 26.5 bits (58), Expect = 9.7 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 6/66 (9%) Query: 180 DCMFFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAI 238 +F +W IV +F ++ + + +T + + RD + Sbjct: 81 IHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESIT----DVLVRTKRDWL 136 Query: 239 I-HGGW 243 + GW Sbjct: 137 VKQRGW 142 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.332 0.145 0.459 Gapped Lambda K H 0.267 0.0455 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,443,071 Number of extensions: 159035 Number of successful extensions: 531 Number of sequences better than 10.0: 1 Number of HSP's gapped: 514 Number of HSP's successfully gapped: 78 Length of query: 385 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 291 Effective length of database: 3,414,294 Effective search space: 993559554 Effective search space used: 993559554 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 58 (26.8 bits)