RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781098|ref|YP_003065511.1| cell division protein FtsW
peptidoglycan synthesis [Candidatus Liberibacter asiaticus str. psy62]
         (385 letters)



>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 196

 Score = 29.6 bits (66), Expect = 0.50
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 183 FFITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-H 240
            F  G++W  IV  F+F G + +    + M  +  RI  +M     ++  D     I  +
Sbjct: 130 LFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMA----TYLNDHLEPWIQEN 185

Query: 241 GGW 243
           GGW
Sbjct: 186 GGW 188


>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score = 29.1 bits (65), Expect = 0.60
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 184 FITGISWLWIVV-FAFLGLMSLFIAYQTMPHVAIRINHFMTGVGDSFQIDSSRDAII-HG 241
           F  G++W  IV  F F G+M +    + M  +   I  +MT     +        I  +G
Sbjct: 95  FRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMT----EYLNRHLHTWIQDNG 150

Query: 242 GW 243
           GW
Sbjct: 151 GW 152


>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
           1496]}
          Length = 542

 Score = 26.8 bits (59), Expect = 3.4
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 236 DAIIHGGWFGKGPGEGVIK--RVIPDSHTDFVFSV 268
           +  +H  W G    +  I       D ++D+  +V
Sbjct: 95  EKNLHFVWIGGQINDTAINYINQWKDVNSDYNVNV 129


>d1yq2a4 b.30.5.1 (A:722-1023) beta-Galactosidase, domain 5
           {Arthrobacter sp. c2-2 [TaxId: 192168]}
          Length = 302

 Score = 26.2 bits (57), Expect = 5.1
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 219 NHFMTGVGDSFQIDSSRDAIIHGGWFGKGPGEGVIKR 255
           N     +G  + + +  D      WFG GP E     
Sbjct: 144 NLVWPRIGVRWDLPTDVDGAA---WFGAGPRESYPDS 177


>d1im3d_ b.1.18.5 (D:) Cytomegalovirus protein US2 {Human
           cytomegalovirus [TaxId: 10359]}
          Length = 95

 Score = 26.1 bits (57), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 229 FQIDSSRDAIIHGGWFGKGPGEGVIKRVIPDSHTDF 264
           FQI+ +R  I +G  F +G   G + R + D   D+
Sbjct: 3   FQIEDNRCYIDNGKLFARGSIVGNMSRFVFDPKADY 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.145    0.459 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,493,871
Number of extensions: 69801
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 46
Length of query: 385
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,213,086
Effective search space: 361499628
Effective search space used: 361499628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (24.8 bits)