HHsearch alignment for GI: 254781099 and conserved domain: COG0771
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=796.33 Aligned_cols=437 Identities=37% Similarity=0.524 Sum_probs=375.5
Q ss_pred CHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHH----HHHHHHCCCEEEC--CCCCCCCCCCEEEECCCCCC
Q ss_conf 13218987999836854899999999859869998189647----8899978989964--53157225888998888685
Q gi|254781099|r 3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCA----VKQAKDMGIEVID--FREIPWSIISFLVLSPGIAL 76 (468)
Q Consensus 3 ~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~----~~~l~~~g~~~~~--~~~~~~~~~d~vv~Spgi~~ 76 (468)
T Consensus 2 ~~~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 2 MEDFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEECCCCCC
T ss_conf 51005997999926651099999999779869998389876532344442037223137641100134778998999999
Q ss_pred CCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 67557888999997698099830342233430156886899603457521578999999873100000001244322110
Q gi|254781099|r 77 TGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLE 156 (468)
Q Consensus 77 ~~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~ 156 (468)
T Consensus 82 ~----~p~v~~A~~~gi~i~~dieL~~r~~----~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~ 153 (448)
T COG0771 82 T----HPLVEAAKAAGIEIIGDIELFYRLS----GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELL 153 (448)
T ss_pred C----CHHHHHHHHCCCCEEEHHHHHHHHC----CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHH
T ss_conf 8----8899999986993774888898744----8999899979996288999999999855998321351671378762
Q ss_pred CC-CCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECC-CCCCCCCCHHHHHHHHHCC
Q ss_conf 16-888379992177543212233322101110021012221110000112210001013-4432247867899987401
Q gi|254781099|r 157 YF-SPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSK-HAIICINDHQCEKIAYDMN 234 (468)
Q Consensus 157 ~~-~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~-~~iln~dd~~~~~~~~~~~ 234 (468)
T Consensus 154 ~~~~~~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~~~Vin~dd~~~~~~~~~~- 232 (448)
T COG0771 154 EQAEPADVYVLELSSFQLETTSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTEVAVINADDAYLKTLADEA- 232 (448)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC-
T ss_conf 0157898799992455516576678557999448877865606999999999999838962799837727776544303-
Q ss_pred CCCCEEECCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 23430110364432223411212413541467642123455885101110011012221022222110000000013454
Q gi|254781099|r 235 FIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTH 314 (468)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~ 314 (468)
T Consensus 233 -~~~~~~~fs~~~~~~-~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~H 310 (448)
T COG0771 233 -TKARVIWFSFGEPLA-DGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPH 310 (448)
T ss_pred -CCCEEEEEECCCCCC-CCCEEECCHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf -663268897466455-663343401103530003342158754524998999999999839998999999973899986
Q ss_pred HHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCC-CEEEEECCCHHHHHHHHHCC
Q ss_conf 43321003430000023556755555532013332001203210122068989984278-68999889989988863168
Q gi|254781099|r 315 RLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKI-AKAYFIGNSAMLFFHHFGGK 393 (468)
Q Consensus 315 R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~-~~~~liG~~~~~i~~~~~~~ 393 (468)
T Consensus 311 R~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~~~v~lI~GG~~Kg~df~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~ 390 (448)
T COG0771 311 RLEFVGEKDGVLFINDSKATNVDATLAALSGFDGPVILIAGGDDKGADFSPLAEILAKVIKKLVLIGEDAEKIAAALKEA 390 (448)
T ss_pred CEEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHC
T ss_conf 22798861988996078788888999999718997799977778888816889977415559999478889999998752
Q ss_pred CC-EEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98-8998799999999999998448985999452216631347989999999999986379
Q gi|254781099|r 394 IN-STLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPG 453 (468)
Q Consensus 394 ~~-~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~~ 453 (468)
T Consensus 391 ~~~~~~~~~le~Av~~a~~---~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~v~~l~~ 448 (448)
T COG0771 391 GPSLVICETLEEAVQLARE---LAQPGDVVLLSPACASFDQFKNFEERGEEFKELVSELGG 448 (448)
T ss_pred CCCEEECCCHHHHHHHHHH---HHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 7853614769999999998---725898699764421642223799999999999998549