HHsearch alignment for GI: 254781099 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=793.86 Aligned_cols=438 Identities=26% Similarity=0.355 Sum_probs=354.4
Q ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHH-HHHHHHCCCEEECC--CCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 3218987999836854899999999859869998189647-88999789899645--31572258889988886856755
Q gi|254781099|r 4 SSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCA-VKQAKDMGIEVIDF--REIPWSIISFLVLSPGIALTGEN 80 (468)
Q Consensus 4 ~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~-~~~l~~~g~~~~~~--~~~~~~~~d~vv~Spgi~~~~~~ 80 (468)
T Consensus 14 ~~l~~-kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~--- 89 (476)
T PRK00141 14 DALRG-RVLVAGAGVSGLGIAKMLSELGCDVVVADDNETQRHMLIEVVDVADISTAQASDALDSYSIVVTSPGWRPD--- 89 (476)
T ss_pred HHHCC-CEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEECCCCHHHHHCCCCEEEECCCCCCC---
T ss_conf 98699-88999227889999999997899799998998703578874798565155306564689999989978997---
Q ss_pred CCHHHHHHHHCCCEEEEEHHHHHHHHHHCC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CC
Q ss_conf 788899999769809983034223343015--688689960345752157899999987310000000124432211-01
Q gi|254781099|r 81 AHWCVKLANQFNVEIIGDIELFVRERRFSS--LQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNL-EY 157 (468)
Q Consensus 81 ~~~~~~~a~~~gi~v~s~~el~~~~~~~~~--~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~-~~ 157 (468)
T Consensus 90 -~p~l~~a~~~gi~viseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GNIG~p~~~~l~~ 168 (476)
T PRK00141 90 -SPLLVDAQSAGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFAAVAVGNIGIPVSAALVA 168 (476)
T ss_pred -CHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHC
T ss_conf -9999999987995771999999861164336777638896899679899999999983799728995067246666525
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 68883799921775432122333221011100210122211100001122100010134432247867899987401234
Q gi|254781099|r 158 FSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIG 237 (468)
Q Consensus 158 ~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~~ 237 (468)
T Consensus 169 ~~~~d~~VlElSSfQL~~~~~~~p~iaVilNIs~DHLD~h~s~e~Y~~aK~kI~~~~-~~vi~~Dd~~~~~~~~~~~~~~ 247 (476)
T PRK00141 169 QNRIDVLVAELSSFQLHWAPTFTPDAGVVLNLAEDHIDWHGSMRDYALDKARVLTAP-VAVIGADDPYVVELTREADLSG 247 (476)
T ss_pred CCCCCEEEEECCCCHHCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCC
T ss_conf 787758999778201200223686589872688789866269999999999873488-2499778789999887447886
Q ss_pred CEEECCCCCCCCCCCCEEECCCEEE-ECC-CCC--CCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHH
Q ss_conf 3011036443222341121241354-146-764--212345588510111001101222102222211000000001345
Q gi|254781099|r 238 HSISRISSQSLQSDSDLYIDESFLK-CSA-TSE--VIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLT 313 (468)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~ 313 (468)
T Consensus 248 ~~--~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~~F~gl~ 324 (476)
T PRK00141 248 LI--GFTLGE-PAEGQVGVRAGELVDNAFGDNVVLASADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALAGFEVAG 324 (476)
T ss_pred EE--EECCCC-CCCCCEEEECCEEEEEECCCCCEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 79--852787-553524477688998515775032124323776533599999999999984999999999998568988
Q ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHC-CCCEEEEECCCHHHHHHHHHC
Q ss_conf 4433210034300000235567555555320133320012032101220689899842-786899988998998886316
Q gi|254781099|r 314 HRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFIS-KIAKAYFIGNSAMLFFHHFGG 392 (468)
Q Consensus 314 ~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~-~~~~~~liG~~~~~i~~~~~~ 392 (468)
T Consensus 325 HR~E~v~~~~gV~fiNDSKaTN~~at~~AL~~~~-~iilI~GG~~Kg~d~~~l~~~~~~~vk~v~l~G~~~~~i~~~l~~ 403 (476)
T PRK00141 325 HRGQVVAEHDGVHFIDNSKATNPHAADSALAGHE-SVIWVAGGQLKGADIDELIATHGGRIKAALVLGADRAEIVAAVKE 403 (476)
T ss_pred CCEEEEEEECCEEEECCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHH
T ss_conf 6127999989999981798999899999997288-739994476577787999999863310999976898999999985
Q ss_pred CC---CEEEECC--HHHHHHHHHHHH-HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 89---8899879--999999999999-84489859994522166313479899999999999863
Q gi|254781099|r 393 KI---NSTLSKT--LDQALKSVVRDV-ENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451 (468)
Q Consensus 393 ~~---~~~~~~~--~~~a~~~i~~~~-~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l 451 (468)
T Consensus 404 ~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLLSPacaSfD~f~nyeeRG~~F~~~V~~~ 468 (476)
T PRK00141 404 HAPDAPVTVTDKTDPEEAMREAVAAAFSLAEPGDSVVLAPAAASLDMYTGMGQRGDLFAHYIIGT 468 (476)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 47888268861545788999999999973889898998945430205179999999999999999