HHsearch alignment for GI: 254781099 and conserved domain: PRK00421
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=542.01 Aligned_cols=404 Identities=19% Similarity=0.275 Sum_probs=304.3
Q ss_pred CCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEECCC-HHHHHHHHCCCEEEC-CCCCCCCCCCEEEECCCCCCCCCCCCH
Q ss_conf 8987999836854899-9999998598699981896-478899978989964-531572258889988886856755788
Q gi|254781099|r 7 RNHSIAVFGLGRSGLS-AACALKDSGVHVIAWDDHP-CAVKQAKDMGIEVID-FREIPWSIISFLVLSPGIALTGENAHW 83 (468)
Q Consensus 7 ~~k~v~i~G~G~sG~s-~A~~l~~~G~~V~~~D~~~-~~~~~l~~~g~~~~~-~~~~~~~~~d~vv~Spgi~~~~~~~~~ 83 (468)
T Consensus 7 ~~k~ih~iGigG~GmsalA~~l~~~G~~V~gsD~~~~~~~~~L~~~Gi~v~~g~~~~~l~~~d~vV~Sp~I~~~----~p 82 (459)
T PRK00421 7 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKGADVVVVSSAIKPD----NP 82 (459)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEECCCCHHHCCCCCEEEECCCCCCC----CH
T ss_conf 67889999866888999999999689939998898997899999787999779897987999999989985998----99
Q ss_pred HHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 89999976980998303422334301568868996034575215789999998731000--0000124432211016888
Q gi|254781099|r 84 CVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDV--QLGGNIGLPILNLEYFSPN 161 (468)
Q Consensus 84 ~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~--~~~GNiG~p~~~~~~~~~~ 161 (468)
T Consensus 83 ~~~~a~~~gi~v~~~~e~l~~~~----~~~~~IaVtGTnGKTTtT~ll~~il~~~g~~~~~~iGg~~~~~-~~~~~~~~~ 157 (459)
T PRK00421 83 ELVAARELGIPVVRRAEMLAELM----RLRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFIIGGILNAA-GTNARLGSS 157 (459)
T ss_pred HHHHHHHCCCCEEEHHHHHHHHH----HCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC-CCCCCCCCC
T ss_conf 99999987997988999999998----2596499977888611899999999976998748857533556-654525889
Q ss_pred CEEEEEC----CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEC---CCCCCCCCCHHHHHHHHHCC
Q ss_conf 3799921----7754321223332210111002101222111000011221000101---34432247867899987401
Q gi|254781099|r 162 RFYVIEC----SSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMS---KHAIICINDHQCEKIAYDMN 234 (468)
Q Consensus 162 ~~~V~E~----SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~---~~~iln~dd~~~~~~~~~~~ 234 (468)
T Consensus 158 ~~~V~E~dE~d~sf~-----~~~P~iavitNI~~DHLD~h~s~e~Y~~ak~~~~~~~~~~g~~ViN~DD~~~~~l~~~~~ 232 (459)
T PRK00421 158 DYFVAEADESDRSFL-----KLHPDIAVVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPELRELLPRVD 232 (459)
T ss_pred CEEEEEECCCCCCHH-----HCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHCC
T ss_conf 889999535414364-----458989999179877865601899999999999971995472114687989999877438
Q ss_pred CCCCEEECCCCCCCCCCCCEEECC--CEEEECCC-CCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHH
Q ss_conf 234301103644322234112124--13541467-642123455885101110011012221022222110000000013
Q gi|254781099|r 235 FIGHSISRISSQSLQSDSDLYIDE--SFLKCSAT-SEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGG 311 (468)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~g 311 (468)
T Consensus 233 ~~vitfg~~~~~d~~~-~~i~~~~~~~~f~~~~~~~~~~~~~l~l~G~HNv~NalAAia~a~~lGi~~e~i~~aL~~F~G 311 (459)
T PRK00421 233 RPVITYGFSEDADFRA-ENIRQDGGGSHFDVLREGEDLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIRKALATFKG 311 (459)
T ss_pred CCCEEECCCCCCCEEE-EEEEEECCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 8600235687666678-889994892389998389378899956863889999999999999849999999999975357
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHC---C--CCCCEEEECC--CCCCCC-HHHHHHHHCCCCEEEEE----
Q ss_conf 4544332100343000002355675555553201---3--3320012032--101220-68989984278689998----
Q gi|254781099|r 312 LTHRLQTIARLGHVIFINDSKATNLHSVIHAFLN---E--KRRIYWIAGG--LSKSDD-FSTLFPFISKIAKAYFI---- 379 (468)
Q Consensus 312 v~~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~---~--~~~i~lI~GG--~~K~~d-~~~L~~~~~~~~~~~li---- 379 (468)
T Consensus 312 v~~R~E~v~~~~gv~~idD-YAH~P~~i~a~l~alr~~~~~~rii~vfqPh~~sR~~~~~~e~a~~l~~aD~vil~~iy~ 390 (459)
T PRK00421 312 VKRRFEEKGEVNGVVLIDD-YAHHPTEIKATLKAARQKYPDKRIVAVFQPHRYSRTRDLFDEFAEVLSDADEVILLDIYA 390 (459)
T ss_pred CCEEEEEEEECCCEEEEEE-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 4502799872288479973-568938999999999987689966999867420548999999999987199999888758
Q ss_pred -------CCCHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf -------8998998886316--8988998799999999999998448985999452216
Q gi|254781099|r 380 -------GNSAMLFFHHFGG--KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCA 429 (468)
Q Consensus 380 -------G~~~~~i~~~~~~--~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~a 429 (468)
T Consensus 391 a~E~~~~g~~~~~i~~~i~~~~~~~~~~~~~~~~ai~~~~---~~a~~gDvVL~~GaGd 446 (459)
T PRK00421 391 AGEAPIPGVDSEDLARAIRKRGHVDVIFVPDVDDLAELLA---DVLQPGDLVLTMGAGD 446 (459)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHH---HHCCCCCEEEEECCCC
T ss_conf 8887657889999999998608988799699999999999---8589989999979999