HHsearch alignment for GI: 254781099 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=759.63 Aligned_cols=408 Identities=28% Similarity=0.401 Sum_probs=338.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 87999836854899999999859869998189647889997898996453157225888998888685675578889999
Q gi|254781099|r 9 HSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISFLVLSPGIALTGENAHWCVKLA 88 (468)
Q Consensus 9 k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~Spgi~~~~~~~~~~~~~a 88 (468)
T Consensus 4 KkvlV~GlG~SG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGi~~~----~p~~~~a 79 (418)
T PRK00683 4 QRVVVLGLGVTGKSVARFLAQKGVYVIGVDNSLEALQSCPYIHERYLEGAEEFPEQVDLVVRSPGIKPY----HPWVEAA 79 (418)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCHHHHHCCCCHHHCCCCCCEEEECCCCCCC----CHHHHHH
T ss_conf 669998088879999999997829899982981454546145554056233242349899989985998----8999999
Q ss_pred HHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 97698099830342233430156886899603457521578999999873100000001244322110168883799921
Q gi|254781099|r 89 NQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIEC 168 (468)
Q Consensus 89 ~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~~~~~~~~V~E~ 168 (468)
T Consensus 80 ~~~~i~i~seiel~~~~~~--~~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GNIG~p~l~~~--~~~~~~VlEl 155 (418)
T PRK00683 80 VALKIPVVTDIQLAFQTPE--FQRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGNIGLPILDGM--QQPGVRVVEI 155 (418)
T ss_pred HHCCCCCCCHHHHHHHHHH--HCCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEECCCHHHHHHH--CCCCCEEEEE
T ss_conf 9869975407999974244--14798799976898660999999999867998188803465777643--2589469983
Q ss_pred CCCCCCCCCCCCCCC--CEEEEECCCHHHHHHHHHHCCCCCCCEEEECCC--CCCCCCCHHHH-HHHHHCCCCCCEEECC
Q ss_conf 775432122333221--011100210122211100001122100010134--43224786789-9987401234301103
Q gi|254781099|r 169 SSYQIELTPTIDPSI--GVLLNISPDHLDRHHTLENYVNIKKKIVTMSKH--AIICINDHQCE-KIAYDMNFIGHSISRI 243 (468)
Q Consensus 169 SSfQL~~~~~~~Pdi--avITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~--~iln~dd~~~~-~~~~~~~~~~~~~~~~ 243 (468)
T Consensus 156 SSfQL~~~~~~~p~~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 225 (418)
T PRK00683 156 SSFQLADQEESIPVLSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCLRNPDDLWVGDERSLGNSYLEYV---------- 225 (418)
T ss_pred EHHHHHHHHHCCCCCCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH----------
T ss_conf 1242321243077622121015784241221689999999999998467976468525411017888877----------
Q ss_pred CCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCC-CCCCCCCHHHCCCHHHHHHHHHHHCCC
Q ss_conf 6443222341121241354146764212345588510111001101222102-222211000000001345443321003
Q gi|254781099|r 244 SSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQL-GLKVEEIKRALLSCGGLTHRLQTIARL 322 (468)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~l-Gi~~~~i~~~L~~f~gv~~R~E~i~~~ 322 (468)
T Consensus 226 ------~~~~~~~~~------------~~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glpHR~E~v~~~ 287 (418)
T PRK00683 226 ------QEIMRLLDK------------GSALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPPHRMEYLGEK 287 (418)
T ss_pred ------HHHHHHHCC------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf ------777777445------------31016544032988999999999857999999999997348841113688881
Q ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCC-CCEEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf 43000002355675555553201333200120321012206898998427-86899988998998886316898899879
Q gi|254781099|r 323 GHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISK-IAKAYFIGNSAMLFFHHFGGKINSTLSKT 401 (468)
Q Consensus 323 ~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~-~~~~~liG~~~~~i~~~~~~~~~~~~~~~ 401 (468)
T Consensus 288 ~Gv~fiNDSKaTN~~a~~~AL~s~~~~iilI~GG~~K~~d~~~L~~~~~~~vk~v~~~G~~~~~i~~~l~~~~~~~~~~~ 367 (418)
T PRK00683 288 DGVHYINDSKATTVSAVEKALLAVGKDVIVILGGRNKGGDFPSLLPVLRQTAKHVVAMGECRQEIAQALSEKFPLTVVKD 367 (418)
T ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEECCC
T ss_conf 78237637767898999999985678858997578766786999999863184999968899999998756998798598
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999844898599945221663134798999999999998637985
Q gi|254781099|r 402 LDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGIE 455 (468)
Q Consensus 402 ~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~~~~ 455 (468)
T Consensus 368 l~eAv~~a~~---~a~~gd~VLLSPacaSfD~F~nyeeRG~~Fk~lV~~l~~~~ 418 (418)
T PRK00683 368 LQEAVSCAQE---IAQPGDVILLSPGCASFDQFRSFEERGAYFKQLVGEMEALR 418 (418)
T ss_pred HHHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999998---47898989989755010021599999999999999732169