HHsearch alignment for GI: 254781099 and conserved domain: PRK01368
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=797.86 Aligned_cols=436 Identities=34% Similarity=0.546 Sum_probs=360.1
Q ss_pred CHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHC--CCEEECCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 132189879998368548999999998598699981896478899978--989964531572258889988886856755
Q gi|254781099|r 3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDM--GIEVIDFREIPWSIISFLVLSPGIALTGEN 80 (468)
Q Consensus 3 ~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~--g~~~~~~~~~~~~~~d~vv~Spgi~~~~~~ 80 (468)
T Consensus 1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~~~~~-~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iV~SPGI~~~--- 76 (450)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQNKYDLI-VYDDLKANRDIFEELFSKNAIIALSDSRWQNLDKIVLSPGIPLT--- 76 (450)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCEE-EEECCCCCHHHHHHHHCCCCEECCCCCCHHCCCEEEECCCCCCC---
T ss_conf 97668990899958787999999997199989-99899656478997521483602571115219999989961998---
Q ss_pred CCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 78889999976980998303422334301568868996034575215789999998731000000012443221101688
Q gi|254781099|r 81 AHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSP 160 (468)
Q Consensus 81 ~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~~~~ 160 (468)
T Consensus 77 -~p~~~~a~~~~i~i~~eiel~~~~~----~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GNIG~p~l~~--~~~ 149 (450)
T PRK01368 77 -HEIVKIAKNFNIPITSDIDLLFEKS----KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQA--KAS 149 (450)
T ss_pred -CHHHHHHHHCCCCEEEHHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHC--CCC
T ss_conf -9999999987995876999999766----799779996899974899999999997599628962556366525--268
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEC---CCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 837999217754321223332210111002101222111000011221000101---34432247867899987401234
Q gi|254781099|r 161 NRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMS---KHAIICINDHQCEKIAYDMNFIG 237 (468)
Q Consensus 161 ~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~---~~~iln~dd~~~~~~~~~~~~~~ 237 (468)
T Consensus 150 ~d~~VlElSSfQl~~~~~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~~~~~~~~Vin~Dd~~~~~l~~~l~~~~ 229 (450)
T PRK01368 150 KDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQ 229 (450)
T ss_pred CCEEEEEECCCCHHCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCC
T ss_conf 97599993565220363479878999468877987726878999999999965898888999787488999998630045
Q ss_pred -CEEECCCCCCCCCCCCEEECCCEEEE--CCC-CCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHH
Q ss_conf -30110364432223411212413541--467-64212345588510111001101222102222211000000001345
Q gi|254781099|r 238 -HSISRISSQSLQSDSDLYIDESFLKC--SAT-SEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLT 313 (468)
Q Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~ 313 (468)
T Consensus 230 ~~~~i~f~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glp 308 (450)
T PRK01368 230 RIKLIPFSVTKIL-ENGISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLP 308 (450)
T ss_pred CEEEEEECCCCCC-CCCEEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
T ss_conf 5169740345324-477488547335520155330045211357565899999999999980997777787642467700
Q ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHCC
Q ss_conf 44332100343000002355675555553201333200120321012206898998427868999889989988863168
Q gi|254781099|r 314 HRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGK 393 (468)
Q Consensus 314 ~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~~~~~liG~~~~~i~~~~~~~ 393 (468)
T Consensus 309 HRlE~V~~~~gv~~iNDSKaTN~~a~~~Al~~~~~-i~lI~GG~~K~~d~~~l~~~~~~v~~~~l~G~~~~~~~~~~~~~ 387 (450)
T PRK01368 309 HRMQYIGSINNISFYNDSKATNAISAVQSIKALDN-IYWLAGGIPKEGGIEEIKPYFSKIKKAYFYGQAKEMFANTAKNI 387 (450)
T ss_pred HEEEEEEEECCEEEECCCCCCCHHHHHHHHHCCCC-EEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCC
T ss_conf 14689999899999717887899999999856897-39999415777887999988743879999897899999860589
Q ss_pred CCEEEECCHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9889987999999999999984-489859994522166313479899999999999863
Q gi|254781099|r 394 INSTLSKTLDQALKSVVRDVEN-VQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451 (468)
Q Consensus 394 ~~~~~~~~~~~a~~~i~~~~~~-~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l 451 (468)
T Consensus 388 ~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLlSPacaSfD~f~nye~RG~~F~~lv~~L 446 (450)
T PRK01368 388 VDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERGELFIKLSSIL 446 (450)
T ss_pred CCEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 87696499999999999997557878997996860204013179999999999999998