HHsearch alignment for GI: 254781099 and conserved domain: PRK01438

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=820.56  Aligned_cols=447  Identities=27%  Similarity=0.409  Sum_probs=367.7

Q ss_pred             CHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-----HHHHHHHHCCCEEEC--CCCCCCCCCCEEEECCCCC
Q ss_conf             132189879998368548999999998598699981896-----478899978989964--5315722588899888868
Q gi|254781099|r    3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHP-----CAVKQAKDMGIEVID--FREIPWSIISFLVLSPGIA   75 (468)
Q Consensus         3 ~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~-----~~~~~l~~~g~~~~~--~~~~~~~~~d~vv~Spgi~   75 (468)
T Consensus         9 ~~~~~gk~v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPGI~   88 (481)
T PRK01438          9 HDDWSGLRVVVAGLGVSGFPAADALHELGASVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPGWR   88 (481)
T ss_pred             HHHCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCCCC
T ss_conf             67718998999957588999999999679989999799874486899988854988996887566624899999899789


Q ss_pred             CCCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             56755788899999769809983034223343015688689960345752157899999987310000000124432211
Q gi|254781099|r   76 LTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNL  155 (468)
Q Consensus        76 ~~~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~  155 (468)
T Consensus        89 ~~----~p~~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GNIG~p~l~~  164 (481)
T PRK01438         89 PT----HPLLAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKTTTVQMLASILRAAGLRAAAVGNIGVPVLDA  164 (481)
T ss_pred             CC----CHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf             98----99999999869938618999998752136888789993899746099999999996699707996256777764


Q ss_pred             CC-CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCC-CCCCCCCHHHHHHHHHC
Q ss_conf             01-68883799921775432122333221011100210122211100001122100010134-43224786789998740
Q gi|254781099|r  156 EY-FSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKH-AIICINDHQCEKIAYDM  233 (468)
Q Consensus       156 ~~-~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~-~iln~dd~~~~~~~~~~  233 (468)
T Consensus       165 ~~~~~~~d~~V~ElSSfqL~~~~~~~p~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~~~~~v~n~dD~~~~~l~~~~  244 (481)
T PRK01438        165 VRGPDGYDVLAVELSSFQLHWAPSVRPHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTVACVYNVADPATEDLVREA  244 (481)
T ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC
T ss_conf             22888860899980476513344557648997068777866523598999999998627851499705778899999860


Q ss_pred             CCC------CCEEECCCCCCCCCCCCEEECCCEEEECCC---CCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHH
Q ss_conf             123------430110364432223411212413541467---64212345588510111001101222102222211000
Q gi|254781099|r  234 NFI------GHSISRISSQSLQSDSDLYIDESFLKCSAT---SEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKR  304 (468)
Q Consensus       234 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~  304 (468)
T Consensus       245 ~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~  324 (481)
T PRK01438        245 DVVEGARAIGFTLGTPGPSDLGIVDGILVDRAFVEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRD  324 (481)
T ss_pred             CCCCCCCEEEEECCCCCCCCCCEECCEEEECEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             22447707887358887120121034553020343023453000106640676576999999999999982998899998


Q ss_pred             HCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHC-CCCEEEEECCCH
Q ss_conf             0000013454433210034300000235567555555320133320012032101220689899842-786899988998
Q gi|254781099|r  305 ALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFIS-KIAKAYFIGNSA  383 (468)
Q Consensus       305 ~L~~f~gv~~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~-~~~~~~liG~~~  383 (468)
T Consensus       325 aL~~F~Gl~hR~E~v~~~~GV~fiNDSKaTN~~A~~~AL~~~~-~i~lI~GG~~Kg~d~~~l~~~~~~~vk~~~l~G~~~  403 (481)
T PRK01438        325 GLRAFRPDAHRIEHVADADGVTYVDDSKATNPHAAEASLAAYP-SVVWIAGGLAKGAHFDDLVRAHAARLRGVVLIGADR  403 (481)
T ss_pred             HHHHCCCCCCEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCH
T ss_conf             8863489773378999999999980688789889999987249-889993786578898999999860133999977899


Q ss_pred             HHHHHHHHCCCC---EEE-ECCHHHHHHHHHH-HHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             998886316898---899-8799999999999-9984489859994522166313479899999999999863798
Q gi|254781099|r  384 MLFFHHFGGKIN---STL-SKTLDQALKSVVR-DVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGI  454 (468)
Q Consensus       384 ~~i~~~~~~~~~---~~~-~~~~~~a~~~i~~-~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~~~  454 (468)
T Consensus       404 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~l~g~  479 (481)
T PRK01438        404 ALIREALARHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLLAPACASMDMFTNYAERGEAFAAAVRHLLGG  479 (481)
T ss_pred             HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             9999999722898745773102378999999999963899898998950002022069999999999999972378