HHsearch alignment for GI: 254781099 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=799.54 Aligned_cols=435 Identities=26% Similarity=0.379 Sum_probs=358.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECC--CCCCCCCCCEEEECCCCCCCCCCCCHH
Q ss_conf 898799983685489999999985986999818964788999789899645--315722588899888868567557888
Q gi|254781099|r 7 RNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDF--REIPWSIISFLVLSPGIALTGENAHWC 84 (468)
Q Consensus 7 ~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~--~~~~~~~~d~vv~Spgi~~~~~~~~~~ 84 (468)
T Consensus 11 ~Gk~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~----~p~ 86 (487)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFPPT----APV 86 (487)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCCCC----CHH
T ss_conf 9898999915683899999999786979999898257799986599486376226564677889989957998----999
Q ss_pred HHHHHHCCCEEEEEHHHHHHHHHHCC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999769809983034223343015--6886899603457521578999999873100000001244322110168883
Q gi|254781099|r 85 VKLANQFNVEIIGDIELFVRERRFSS--LQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNR 162 (468)
Q Consensus 85 ~~~a~~~gi~v~s~~el~~~~~~~~~--~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~~~~~~ 162 (468)
T Consensus 87 l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~~~~~GNiG~p~~~~-~~~~~~ 165 (487)
T PRK03369 87 LAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRRSVLCGNIGSPVLDV-LDEPAE 165 (487)
T ss_pred HHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-CCCCCC
T ss_conf 9999988990765999999987444336766559997988727899999999985899859981366576641-247885
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEC
Q ss_conf 79992177543212233322101110021012221110000112210001013443224786789998740123430110
Q gi|254781099|r 163 FYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSISR 242 (468)
Q Consensus 163 ~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~~~~~~~ 242 (468)
T Consensus 166 ~~V~ElSSfql~~~~~~~p~iaVitNI~~DHLD~h~s~e~Y~~aK~ri~~~-~~~v~n~DD~~~~~l~~~~~~~~~~~~~ 244 (487)
T PRK03369 166 LLAVELSSFQLHWAPSLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALTG-RVAVAGLDDSRAAALLDTAPAPVRVGFR 244 (487)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHCCCCEEEEEE
T ss_conf 899981365434466668547885278877875428999999997557339-8799968768899997427876799653
Q ss_pred CCCCCCCCCCCEEECCCEEEE--CCCC--CCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHH
Q ss_conf 364432223411212413541--4676--421234558851011100110122210222221100000000134544332
Q gi|254781099|r 243 ISSQSLQSDSDLYIDESFLKC--SATS--EVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQT 318 (468)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~ 318 (468)
T Consensus 245 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalAA~a~a~~lGi~~~~i~~aL~~F~glphR~E~ 321 (487)
T PRK03369 245 LGEP---AAGELGVRDGHLVDRAFADDLTLAPVDSIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEV 321 (487)
T ss_pred CCCC---CCCCEEEECCEEEEEECCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 2787---6442126536899841367736724664588635369989999999998499999999999857999985289
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHC-CCCEEEEECCCHHHHHHHHHCCC---
Q ss_conf 10034300000235567555555320133320012032101220689899842-78689998899899888631689---
Q gi|254781099|r 319 IARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFIS-KIAKAYFIGNSAMLFFHHFGGKI--- 394 (468)
Q Consensus 319 i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~-~~~~~~liG~~~~~i~~~~~~~~--- 394 (468)
T Consensus 322 v~~~~Gv~fiNDSKaTn~~a~~~Al~s~~-~iilI~GG~~Kg~~~~~L~~~~~~~v~~v~l~G~d~~~i~~~l~~~~~~~ 400 (487)
T PRK03369 322 VAVADGITYVDDSKATNPHAARASILAYP-RVVWIAGGLLKGASVDALVAEMASRLVGAVLIGRDRAVVAEALSRHAPDV 400 (487)
T ss_pred EEEECCEEEEECCCCCCHHHHHHHHHHCC-CEEEECCCCCCCCCHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 99999999982576689889999986155-50896155436777077899997542599997888899999997427766
Q ss_pred CEEEECC--------------------------HHHH-HH-HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8899879--------------------------9999-99-999999844898599945221663134798999999999
Q gi|254781099|r 395 NSTLSKT--------------------------LDQA-LK-SVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMS 446 (468)
Q Consensus 395 ~~~~~~~--------------------------~~~a-~~-~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~ 446 (468)
T Consensus 401 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AV~~A~~~a~~GdvVLLSPacaSfD~f~nye~RG~~F~~ 480 (487)
T PRK03369 401 PVVEVVTGEDAGMPATPEACVLDVTKVDDAGGTLGDAVMTAAVAAARGLARPGDTVLLAPAGASFDQFTGYADRGDAFAA 480 (487)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCHHCCCCHHHHHHHHHH
T ss_conf 52133113222210013454433332100112035779999999999748999989979555341030799999999999
Q ss_pred HHHHC
Q ss_conf 99863
Q gi|254781099|r 447 QVSEI 451 (468)
Q Consensus 447 ~v~~l 451 (468)
T Consensus 481 ~V~~l 485 (487)
T PRK03369 481 AVRAA 485 (487)
T ss_pred HHHHH
T ss_conf 99997