HHsearch alignment for GI: 254781099 and conserved domain: PRK03803
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=803.37 Aligned_cols=433 Identities=29% Similarity=0.428 Sum_probs=364.4
Q ss_pred CCCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC--CHHHHHHHHC--CCEE--ECCCCCCCCCCCEEEECCCC
Q ss_conf 9813218987999836854899999999859869998189--6478899978--9899--64531572258889988886
Q gi|254781099|r 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDH--PCAVKQAKDM--GIEV--IDFREIPWSIISFLVLSPGI 74 (468)
Q Consensus 1 m~~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~--~~~~~~l~~~--g~~~--~~~~~~~~~~~d~vv~Spgi 74 (468)
T Consensus 1 ~~~~~-~~~~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vv~SPgI 79 (448)
T PRK03803 1 MSLIA-SDGLRIVVGLGKSGMSLVRFLARQGYQFAVTDTRENPPELATLRRDYPQVEVRCGELDAEFLCQAEEIIVSPGL 79 (448)
T ss_pred CCEEE-CCCCEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCC
T ss_conf 96360-59958999989999999999997889599991899916799999747997799788897780789999989972
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 85675578889999976980998303422334301568868996034575215789999998731000000012443221
Q gi|254781099|r 75 ALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILN 154 (468)
Q Consensus 75 ~~~~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~ 154 (468)
T Consensus 80 ~~~----~p~~~~a~~~~i~i~~e~el~~~~-----~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNiG~p~~~ 150 (448)
T PRK03803 80 ALA----TPALQAAAAAGIKISGDIELFARA-----AKAPIVAITGSNAKSTVTTLVGEMAKAAGKRVAVGGNLGTPALD 150 (448)
T ss_pred CCC----CHHHHHHHHCCCCEECHHHHHHHH-----CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 999----999999998599683199998621-----78988998589983889999999998659837994032761366
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHC-
Q ss_conf 1016888379992177543212233322101110021012221110000112210001013443224786789998740-
Q gi|254781099|r 155 LEYFSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDM- 233 (468)
Q Consensus 155 ~~~~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~- 233 (468)
T Consensus 151 ~~-~~~~~~~VlElSSfqL~~~~~~~p~iaVitNI~~DHLD~h~s~e~Y~~aK~~If~~~~~~v~n~Dd~~~~~l~~~~~ 229 (448)
T PRK03803 151 LL-SDDVELYVLELSSFQLETTDQLNAEVATVLNISEDHLDRHGGMLAYHQAKHRIFRGAKQVVVNRDDALTRPLVADGT 229 (448)
T ss_pred HH-CCCCCEEEEECCCCHHHCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC
T ss_conf 52-58887899986641120354568628998358753654633899999998777538878999586088888865488
Q ss_pred CCCCCEEECCCCCCCCCCCCEEECCC--EEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHH
Q ss_conf 12343011036443222341121241--3541467642123455885101110011012221022222110000000013
Q gi|254781099|r 234 NFIGHSISRISSQSLQSDSDLYIDES--FLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGG 311 (468)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~g 311 (468)
T Consensus 230 ~~~~f~~~~~---~~~-~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi~~e~I~~aL~~F~G 305 (448)
T PRK03803 230 PCWSFGLNAP---DFG-AFGLREEDGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGLPMEAMLETLKEFKG 305 (448)
T ss_pred CEEEEECCCC---CCC-CCCEEECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 5799835776---512-231695398399961653214333307676235998999999999829987898998863557
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCC----CCCCEEEECCCCCCCCHHHHHHHHCC-CCEEEEECCCHHHH
Q ss_conf 45443321003430000023556755555532013----33200120321012206898998427-86899988998998
Q gi|254781099|r 312 LTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNE----KRRIYWIAGGLSKSDDFSTLFPFISK-IAKAYFIGNSAMLF 386 (468)
Q Consensus 312 v~~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~----~~~i~lI~GG~~K~~d~~~L~~~~~~-~~~~~liG~~~~~i 386 (468)
T Consensus 306 l~hR~E~v~~~~Gv~fiNDSKaTN~~at~~Al~~~~~~~~~~iilI~GG~~K~~d~~~l~~~~~~~v~~v~l~G~~~~~i 385 (448)
T PRK03803 306 LEHRCQWVREVDGVRYYNDSKGTNVGATLAAIEGLGADIEGKLVLIAGGQGKGADFSELREPVAKYCRAVVLIGRDAELI 385 (448)
T ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEEECCCHHHH
T ss_conf 12057999961888999689989978999999964652368689993786666687999999973660999979599999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88631689889987999999999999984489859994522166313479899999999999863
Q gi|254781099|r 387 FHHFGGKINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451 (468)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l 451 (468)
T Consensus 386 ~~~l~~~~~~~~~~~l~~Av~~a~~---~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L 447 (448)
T PRK03803 386 EQALGDAVPLVRAATLEEAVTQAAE---LAQPGDAVLLSPACASLDMFKNFEERGRQFAQAVEGL 447 (448)
T ss_pred HHHHCCCCCEEECCCHHHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9975068987994999999999998---5789898998974402013179999999999999975