HHsearch alignment for GI: 254781099 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=811.42 Aligned_cols=428 Identities=30% Similarity=0.452 Sum_probs=357.1
Q ss_pred CHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHCCCEE--ECCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 132189879998368548999999998598699981896--4788999789899--645315722588899888868567
Q gi|254781099|r 3 LSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHP--CAVKQAKDMGIEV--IDFREIPWSIISFLVLSPGIALTG 78 (468)
Q Consensus 3 ~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~--~~~~~l~~~g~~~--~~~~~~~~~~~d~vv~Spgi~~~~ 78 (468)
T Consensus 1 ~~d~~~k~v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~~~~~~~~l-~~~~~~~~g~~~~~~~~~~d~vV~SPGI~~~- 78 (438)
T PRK03806 1 MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKL-PENVERHTGSLNDEWLLAADLIVASPGIALA- 78 (438)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HCCCCEEECCCCHHHHCCCCEEEECCCCCCC-
T ss_conf 97778998999945788899999999789969999899990057886-4588466577796680679999989978998-
Q ss_pred CCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 55788899999769809983034223343015688689960345752157899999987310000000124432211016
Q gi|254781099|r 79 ENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYF 158 (468)
Q Consensus 79 ~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~~ 158 (468)
T Consensus 79 ---~p~~~~a~~~~i~i~seiel~~~~-----~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~gGNiG~p~~~~-~~ 149 (438)
T PRK03806 79 ---HPSLSAAADAGVEIVGDIELFCRE-----AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALML-LD 149 (438)
T ss_pred ---CHHHHHHHHCCCCEEEHHHHHHCC-----CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HC
T ss_conf ---989999998799477699997222-----799889994899848999999999986599756771577527775-13
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHH-HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 8883799921775432122333221011100210122211-100001122100010134432247867899987401234
Q gi|254781099|r 159 SPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHH-TLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIG 237 (468)
Q Consensus 159 ~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~-s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~~~ 237 (468)
T Consensus 150 ~~~d~~VlElSSfQLe~~~~~~p~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~~~~v~n~dD~~~~~~~~~~~~-~ 228 (438)
T PRK03806 150 QDCELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPVRGADER-C 228 (438)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCC-E
T ss_conf 767579983245330023545763788635888788776545999999999886279689994751877986403565-5
Q ss_pred CEEECCCCCCCCCCCCEEEC--CCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 30110364432223411212--4135414676421234558851011100110122210222221100000000134544
Q gi|254781099|r 238 HSISRISSQSLQSDSDLYID--ESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHR 315 (468)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R 315 (468)
T Consensus 229 --i-~fg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HR 303 (438)
T PRK03806 229 --V-SFGVNM--GDYHLNRQQGETWLRVKGEKVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHR 303 (438)
T ss_pred --E-EEECCC--CCEEEEECCCCEEEEECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
T ss_conf --8-982356--64367605773689737803540121266672049889999999998399989986552047999973
Q ss_pred HHHHCCCCCCEEECCCCCCCHHHHHHHHHCC--CCCCEEEECCCCCCCCHHHHHHHHCC-CCEEEEECCCHHHHHHHHHC
Q ss_conf 3321003430000023556755555532013--33200120321012206898998427-86899988998998886316
Q gi|254781099|r 316 LQTIARLGHVIFINDSKATNLHSVIHAFLNE--KRRIYWIAGGLSKSDDFSTLFPFISK-IAKAYFIGNSAMLFFHHFGG 392 (468)
Q Consensus 316 ~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~--~~~i~lI~GG~~K~~d~~~L~~~~~~-~~~~~liG~~~~~i~~~~~~ 392 (468)
T Consensus 304 lE~v~~~~gv~fiNDSKaTN~~a~~~Al~s~~~~~~i~lI~GG~~K~~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~ 383 (438)
T PRK03806 304 FQLVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNIRLYCFGRDGAQLAALRPE 383 (438)
T ss_pred EEEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCC
T ss_conf 38999979999998972158999999998262039779995477555787999998612656999977788999964122
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 898899879999999999999844898599945221663134798999999999998637
Q gi|254781099|r 393 KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEIP 452 (468)
Q Consensus 393 ~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l~ 452 (468)
T Consensus 384 ~--~~~~~~l~~Av~~a~---~~a~~gd~VLlSPacaSfD~f~nye~RG~~F~~lv~~Lg 438 (438)
T PRK03806 384 V--AQLTETMEQAMRLLA---PRVQPGDMVLLSPACASLDQFKNFEQRGDEFARLAKELG 438 (438)
T ss_pred C--CHHHHHHHHHHHHHH---HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 0--415400999999999---866899989989745030142499999999999999629