HHsearch alignment for GI: 254781099 and conserved domain: PRK03815
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=702.70 Aligned_cols=394 Identities=26% Similarity=0.360 Sum_probs=310.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 79998368548999999998598699981896478899978989964531572258889988886856755788899999
Q gi|254781099|r 10 SIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISFLVLSPGIALTGENAHWCVKLAN 89 (468)
Q Consensus 10 ~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~Spgi~~~~~~~~~~~~~a~ 89 (468)
T Consensus 2 Ki~V~GlG~sG~s~a~~L~~~g~~~-i~dD~~~~~-~~~~~~~~~~~~~~~~~~~~d~vv~SPGI~~~----~p~~~~a~ 75 (401)
T PRK03815 2 KISLFGYGKTTKALARFFVKNGGVD-IYDDKFTEP-KKDEEGNLLLPSNDFDPNKSDLEIPSPGIPPS----HPLIQKAK 75 (401)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEE-EEECCCCCC-CHHHHHCCCCCHHHCCCHHCCEEEECCCCCCC----CHHHHHHH
T ss_conf 3999847771899999999487979-998999862-22464040068433580128689989985998----79999874
Q ss_pred HCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 76980998303422334301568868996034575215789999998731000000012443221101688837999217
Q gi|254781099|r 90 QFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECS 169 (468)
Q Consensus 90 ~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~~~~~~~~V~E~S 169 (468)
T Consensus 76 ~----i~seiel~~~~------~~~~I~ITGTNGKsTtt~li~~iL~~~g--~~~~GNIG~Pl~~~--~~~~~~~VlElS 141 (401)
T PRK03815 76 N----LISEYDYFYSF------MPFSIWISGTNGKTTTTQMLTHLLEDFG--AVSGGNIGTPLAEL--DPNAKIWVLETS 141 (401)
T ss_pred H----HHHHHHHHHHC------CCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEECCCCHHHHHC--CCCCCEEEEEEC
T ss_conf 5----41499999852------7874899847777899999999998669--81304166438862--877887999934
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCC---CCCCCCHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 754321223332210111002101222111000011221000101344---32247867899987401234301103644
Q gi|254781099|r 170 SYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHA---IICINDHQCEKIAYDMNFIGHSISRISSQ 246 (468)
Q Consensus 170 SfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~---iln~dd~~~~~~~~~~~~~~~~~~~~~~~ 246 (468)
T Consensus 142 SfQLe~~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~~~~~~~~i~~~~~~-------~~~~~~~~i~-~~~~ 213 (401)
T PRK03815 142 SFTLHYTNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKLMNEGSVAILPKKYK-------ETPTKAQKIS-YEDE 213 (401)
T ss_pred HHHCCCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHC-------CCCCCCEEEE-ECCH
T ss_conf 4540667566876898836882052362689999999999996288776799722330-------4766617997-2662
Q ss_pred CCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 32223411212413541467642123455885101110011012221022222110000000013454433210034300
Q gi|254781099|r 247 SLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIARLGHVI 326 (468)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~~R~E~i~~~~gv~ 326 (468)
T Consensus 214 ------------~~~~--~~~~i~~~~i~~~~~~~~~~~~-a~~~~--~~~~~~~~~~~l~~F~gl~HRlE~v~~~~gv~ 276 (401)
T PRK03815 214 ------------EDLA--EKFGIDTEKINFKGPFLLDALL-ALAVE--KILFDENDYERLNAFVIEAHKLEEFRDKQGRL 276 (401)
T ss_pred ------------HHHH--HHCCCCHHHCCCCHHHHHHHHH-HHHHH--HCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
T ss_conf ------------7778--7658877870564589999999-99998--55663558999984899888538999848989
Q ss_pred EECCCCCCCHHHHHHHHHCCC-CCCEEEECCCCCCCCHHHHHHHHCCC-CEEEEECCCHHHHHHHHHC-CCCEEEECCHH
Q ss_conf 000235567555555320133-32001203210122068989984278-6899988998998886316-89889987999
Q gi|254781099|r 327 FINDSKATNLHSVIHAFLNEK-RRIYWIAGGLSKSDDFSTLFPFISKI-AKAYFIGNSAMLFFHHFGG-KINSTLSKTLD 403 (468)
Q Consensus 327 iIDDS~atnp~a~~~Al~~~~-~~i~lI~GG~~K~~d~~~L~~~~~~~-~~~~liG~~~~~i~~~~~~-~~~~~~~~~~~ 403 (468)
T Consensus 277 fiNDSKATN~~At~~Al~~~~~~~iilI~GG~~Kg~d~~~L~~~i~~~~~~v~~~G~~~~~i~~~~~~~~~~~~~~~~l~ 356 (401)
T PRK03815 277 WVDDSKATNIDATIQALKRYKDKKIHLILGGDDKGVDLTPLFEELKNFDIEIYAIGSNAEKILALAKEFNIKAQKCEFLE 356 (401)
T ss_pred EECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHCCCCEEECCCHH
T ss_conf 96688789889999999837678679996376556787999999764056999987899999999875698469828699
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999999999984489859994522166313479899999999999863
Q gi|254781099|r 404 QALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451 (468)
Q Consensus 404 ~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l 451 (468)
T Consensus 357 eAv~~a~~---~a~~gdvVLLSPacASfD~FknyeeRG~~Fk~~V~~L 401 (401)
T PRK03815 357 KAVNEIKK---VLKQNEVALLSPAAASLDQFSSYAERGEKFKEFVLKL 401 (401)
T ss_pred HHHHHHHH---HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999998---5789798998974403002069999999999999739