HHsearch alignment for GI: 254781099 and conserved domain: PRK04308

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=812.25  Aligned_cols=431  Identities=29%  Similarity=0.451  Sum_probs=366.3

Q ss_pred             HHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHH--CCCEEE--CCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             2189879998368548999999998598699981896--47889997--898996--45315722588899888868567
Q gi|254781099|r    5 SFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHP--CAVKQAKD--MGIEVI--DFREIPWSIISFLVLSPGIALTG   78 (468)
Q Consensus         5 ~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~--~~~~~l~~--~g~~~~--~~~~~~~~~~d~vv~Spgi~~~~   78 (468)
T Consensus         2 ~~~~k~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPgI~~~-   80 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISER-   80 (445)
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECCCCCCC-
T ss_conf             9799989999989999999999997899199997999953189997436996899378636501599999989953899-


Q ss_pred             CCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-
Q ss_conf             5578889999976980998303422334301568868996034575215789999998731000000012443221101-
Q gi|254781099|r   79 ENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEY-  157 (468)
Q Consensus        79 ~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~-  157 (468)
T Consensus        81 ---~p~l~~a~~~gi~i~~~~el~~~~~~~--~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GNiG~p~~~~~~~  155 (445)
T PRK04308         81 ---QPDIEAFKQNGGRVLGDIELLADIVNR--RGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQ  155 (445)
T ss_pred             ---CHHHHHHHHCCCCEECHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
T ss_conf             ---999999997599571599999999841--699579994899837799999999997599629985037521111444


Q ss_pred             --CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             --688837999217754321223332210111002101222111000011221000101344322478678999874012
Q gi|254781099|r  158 --FSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNF  235 (468)
Q Consensus       158 --~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~  235 (468)
T Consensus       156 ~~~~~~d~~VlElSSfql~~~~~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~~~~~~vln~dd~~~~~~~~~~~-  234 (445)
T PRK04308        156 REGKKADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQVLNADDAFCRAMKRAGR-  234 (445)
T ss_pred             HCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCC-
T ss_conf             3278786799996033446655437638998589856754535999999999974457977999387199999986699-


Q ss_pred             CCCEEECCCCCCCCCCCCEEE--CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHH
Q ss_conf             343011036443222341121--241354146764212345588510111001101222102222211000000001345
Q gi|254781099|r  236 IGHSISRISSQSLQSDSDLYI--DESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLT  313 (468)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~  313 (468)
T Consensus       235 ---~v~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~  308 (445)
T PRK04308        235 ---EVKWFSLE---HEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLP  308 (445)
T ss_pred             ---CEEEEECC---CCCCEEEECCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf             ---56998137---656368961663797468114543025667654798899999999982998899999987579999


Q ss_pred             HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCC-CEEEEECCCHHHHHHHHHC
Q ss_conf             443321003430000023556755555532013332001203210122068989984278-6899988998998886316
Q gi|254781099|r  314 HRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKI-AKAYFIGNSAMLFFHHFGG  392 (468)
Q Consensus       314 ~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~-~~~~liG~~~~~i~~~~~~  392 (468)
T Consensus       309 hR~E~v~~~~GV~~iNDSKaTn~~at~~Al~~~~~~i~lI~GG~~Kg~d~~~l~~~~~~~~~~v~~~G~~~~~i~~~l~~  388 (445)
T PRK04308        309 HRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDG  388 (445)
T ss_pred             CCEEEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHH
T ss_conf             86289986489889807988888999999982779779997676677786999999875256999989799999998863


Q ss_pred             -CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             -89889987999999999999984489859994522166313479899999999999863
Q gi|254781099|r  393 -KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI  451 (468)
Q Consensus       393 -~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l  451 (468)
T Consensus       389 ~~~~~~~~~~l~~Av~~a~~---~a~~g~~VLlSPa~aSfD~f~nye~RG~~F~~~v~~L  445 (445)
T PRK04308        389 CGLNLTDCATLEEAVQTAYA---QAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL  445 (445)
T ss_pred             CCCCEEECCCHHHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             79855876879999999997---4889898998973404013079999999999999739