HHsearch alignment for GI: 254781099 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=812.25 Aligned_cols=431 Identities=29% Similarity=0.451 Sum_probs=366.3
Q ss_pred HHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHH--CCCEEE--CCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 2189879998368548999999998598699981896--47889997--898996--45315722588899888868567
Q gi|254781099|r 5 SFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHP--CAVKQAKD--MGIEVI--DFREIPWSIISFLVLSPGIALTG 78 (468)
Q Consensus 5 ~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~--~~~~~l~~--~g~~~~--~~~~~~~~~~d~vv~Spgi~~~~ 78 (468)
T Consensus 2 ~~~~k~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPgI~~~- 80 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISER- 80 (445)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECCCCCCC-
T ss_conf 9799989999989999999999997899199997999953189997436996899378636501599999989953899-
Q ss_pred CCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-
Q ss_conf 5578889999976980998303422334301568868996034575215789999998731000000012443221101-
Q gi|254781099|r 79 ENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEY- 157 (468)
Q Consensus 79 ~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~~~~- 157 (468)
T Consensus 81 ---~p~l~~a~~~gi~i~~~~el~~~~~~~--~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GNiG~p~~~~~~~ 155 (445)
T PRK04308 81 ---QPDIEAFKQNGGRVLGDIELLADIVNR--RGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQ 155 (445)
T ss_pred ---CHHHHHHHHCCCCEECHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
T ss_conf ---999999997599571599999999841--699579994899837799999999997599629985037521111444
Q ss_pred --CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf --688837999217754321223332210111002101222111000011221000101344322478678999874012
Q gi|254781099|r 158 --FSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNF 235 (468)
Q Consensus 158 --~~~~~~~V~E~SSfQL~~~~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~iln~dd~~~~~~~~~~~~ 235 (468)
T Consensus 156 ~~~~~~d~~VlElSSfql~~~~~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~~~~~~vln~dd~~~~~~~~~~~- 234 (445)
T PRK04308 156 REGKKADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQVLNADDAFCRAMKRAGR- 234 (445)
T ss_pred HCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCC-
T ss_conf 3278786799996033446655437638998589856754535999999999974457977999387199999986699-
Q ss_pred CCCEEECCCCCCCCCCCCEEE--CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCHHHHH
Q ss_conf 343011036443222341121--241354146764212345588510111001101222102222211000000001345
Q gi|254781099|r 236 IGHSISRISSQSLQSDSDLYI--DESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLT 313 (468)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f~gv~ 313 (468)
T Consensus 235 ---~v~~~~~~---~~~d~~~~~~~~~~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~ 308 (445)
T PRK04308 235 ---EVKWFSLE---HEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLP 308 (445)
T ss_pred ---CEEEEECC---CCCCEEEECCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf ---56998137---656368961663797468114543025667654798899999999982998899999987579999
Q ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCC-CEEEEECCCHHHHHHHHHC
Q ss_conf 443321003430000023556755555532013332001203210122068989984278-6899988998998886316
Q gi|254781099|r 314 HRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKSDDFSTLFPFISKI-AKAYFIGNSAMLFFHHFGG 392 (468)
Q Consensus 314 ~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~~~i~lI~GG~~K~~d~~~L~~~~~~~-~~~~liG~~~~~i~~~~~~ 392 (468)
T Consensus 309 hR~E~v~~~~GV~~iNDSKaTn~~at~~Al~~~~~~i~lI~GG~~Kg~d~~~l~~~~~~~~~~v~~~G~~~~~i~~~l~~ 388 (445)
T PRK04308 309 HRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDG 388 (445)
T ss_pred CCEEEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCHHHHHHHHHH
T ss_conf 86289986489889807988888999999982779779997676677786999999875256999989799999998863
Q ss_pred -CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -89889987999999999999984489859994522166313479899999999999863
Q gi|254781099|r 393 -KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQVSEI 451 (468)
Q Consensus 393 -~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~v~~l 451 (468)
T Consensus 389 ~~~~~~~~~~l~~Av~~a~~---~a~~g~~VLlSPa~aSfD~f~nye~RG~~F~~~v~~L 445 (445)
T PRK04308 389 CGLNLTDCATLEEAVQTAYA---QAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL 445 (445)
T ss_pred CCCCEEECCCHHHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 79855876879999999997---4889898998973404013079999999999999739