HHsearch alignment for GI: 254781099 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=797.63 Aligned_cols=441 Identities=25% Similarity=0.337 Sum_probs=354.6
Q ss_pred CCCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHH---HHCCCEE-ECCCCCCCCCCCEEEECCCCC
Q ss_conf 98132189879998368548999999998598699981-896478899---9789899-645315722588899888868
Q gi|254781099|r 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWD-DHPCAVKQA---KDMGIEV-IDFREIPWSIISFLVLSPGIA 75 (468)
Q Consensus 1 m~~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~~V~~~D-~~~~~~~~l---~~~g~~~-~~~~~~~~~~~d~vv~Spgi~ 75 (468)
T Consensus 1 m~~~~~~gkkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~vv~SPGi~ 80 (468)
T PRK04690 1 MRISQLEGKRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASAQRLAAFEVVVKSPGIS 80 (468)
T ss_pred CCHHHCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCHHHHHCCCEEEECCCCC
T ss_conf 97644397979998347879999999996699049997288324646676204575674677855761488999899579
Q ss_pred CCCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5675578889999976980998303422334301-568868996034575215789999998731000000012443221
Q gi|254781099|r 76 LTGENAHWCVKLANQFNVEIIGDIELFVRERRFS-SLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQLGGNIGLPILN 154 (468)
Q Consensus 76 ~~~~~~~~~~~~a~~~gi~v~s~~el~~~~~~~~-~~~~~vI~VTGT~GKTTt~~ll~~iL~~~g~~~~~~GNiG~p~~~ 154 (468)
T Consensus 81 ~~----~p~~~~a~~~~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GNIG~P~~~ 156 (468)
T PRK04690 81 PY----RPEALAAAAQGTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGQPLLE 156 (468)
T ss_pred CC----CHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
T ss_conf 86----89999999879948868999998753112567878999699858999999999998579982898677644676
Q ss_pred CCC-CCCCCEEEEECCCCCCCCC--CCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEC--CCCCCCCCCHHHHHH
Q ss_conf 101-6888379992177543212--23332210111002101222111000011221000101--344322478678999
Q gi|254781099|r 155 LEY-FSPNRFYVIECSSYQIELT--PTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMS--KHAIICINDHQCEKI 229 (468)
Q Consensus 155 ~~~-~~~~~~~V~E~SSfQL~~~--~~~~PdiavITNI~~DHLd~~~s~e~y~~aK~~i~~~~--~~~iln~dd~~~~~~ 229 (468)
T Consensus 157 ~~~~~~~~d~~VlElSSfQLe~~~~~~~~p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~~~~~vin~~D~~~~~~ 236 (468)
T PRK04690 157 VLAPQPAPAYWAIELSSYQTGDVGRSGARPELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGRPRIALLNAADPRLAAL 236 (468)
T ss_pred HHCCCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 53247888579999432057654531478778753048887874608999999999999965799779997888899975
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCHHHCCCH
Q ss_conf 87401234301103644322234112124135414676421234558851011100110122210222221100000000
Q gi|254781099|r 230 AYDMNFIGHSISRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSC 309 (468)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~HNi~NalaAia~a~~lGi~~~~i~~~L~~f 309 (468)
T Consensus 237 ~~~~----~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~I~~aL~sF 307 (468)
T PRK04690 237 QLPD----SEVRWFNHP-----DGWHVRGDVVYRGEQAIFDTANVPLPGRHNRGNLCAVLAALEALGLDAAALAPAAASF 307 (468)
T ss_pred HCCC----CCEEEECCC-----CCEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 2577----846995177-----7537606678835620111123677770048769999999998389889999987426
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCC-CCCEEEECCCCCCCCHHHHHHHHCCCC--EEEEECCCHHHH
Q ss_conf 13454433210034300000235567555555320133-320012032101220689899842786--899988998998
Q gi|254781099|r 310 GGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEK-RRIYWIAGGLSKSDDFSTLFPFISKIA--KAYFIGNSAMLF 386 (468)
Q Consensus 310 ~gv~~R~E~i~~~~gv~iIDDS~atnp~a~~~Al~~~~-~~i~lI~GG~~K~~d~~~L~~~~~~~~--~~~liG~~~~~i 386 (468)
T Consensus 308 ~glpHRlE~v~~~~gv~fiNDSKATN~~a~~~AL~~f~~~~iilI~GG~~Kg~d~~~l~~~~~~~~~~~vi~~G~~~~~i 387 (468)
T PRK04690 308 RPLPNRLQELGSVDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGLDWTDFAAHMAQQAPLEIVTMGANGPRI 387 (468)
T ss_pred CCCCCCEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 79997527999989999973787789899999997276685799973676677879999998633768999974788999
Q ss_pred HHHHHC-----CCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH-------HHHCCCC
Q ss_conf 886316-----8988998799999999999998448985999452216631347989999999999-------9863798
Q gi|254781099|r 387 FHHFGG-----KINSTLSKTLDQALKSVVRDVENVQLPSIVLFSPGCASFDQYNNFRERGFSFMSQ-------VSEIPGI 454 (468)
Q Consensus 387 ~~~~~~-----~~~~~~~~~~~~a~~~i~~~~~~~~~gDiVLlSPa~aS~d~f~~y~~RG~~F~~~-------v~~l~~~ 454 (468)
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~--~~~~gd~VLLSPacASfD~F~nyeeRG~~Fk~L~~~~~~~~~~~~~~ 465 (468)
T PRK04690 388 HALLAPLADAGRFGLHAADDLPHAMALARTA--LGAQGGVVLLSPGAPSFGAYRDYVARGRHFAQLAGFDPAAISAIPGL 465 (468)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHH--CCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCC
T ss_conf 9997523445631025406799999999996--05899989979531150041799999999999878087778526775
Q ss_pred CC
Q ss_conf 52
Q gi|254781099|r 455 EM 456 (468)
Q Consensus 455 ~~ 456 (468)
T Consensus 466 ~~ 467 (468)
T PRK04690 466 GV 467 (468)
T ss_pred CC
T ss_conf 76