HHsearch alignment for GI: 254781099 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=93.92 E-value=0.045 Score=33.39 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=30.6
Q ss_pred CCCEEEEE---CCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88689960---34575215789999998731000000
Q gi|254781099|r 112 QSPFIAVT---GTNGKSSTVALISHVLRKNGYDVQLG 145 (468)
Q Consensus 112 ~~~vI~VT---GT~GKTTt~~ll~~iL~~~g~~~~~~ 145 (468)
T Consensus 120 ~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9828999788877659999999999999779988999