HHsearch alignment for GI: 254781099 and conserved domain: TIGR02374
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=95.78 E-value=0.051 Score=33.04 Aligned_cols=78 Identities=27% Similarity=0.320 Sum_probs=59.3
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCHH-------------HHHHHHCCCEEEC--CC------------------
Q ss_conf 99836854899999999859869998189647-------------8899978989964--53------------------
Q gi|254781099|r 12 AVFGLGRSGLSAACALKDSGVHVIAWDDHPCA-------------VKQAKDMGIEVID--FR------------------ 58 (468)
Q Consensus 12 ~i~G~G~sG~s~A~~l~~~G~~V~~~D~~~~~-------------~~~l~~~g~~~~~--~~------------------ 58 (468)
T Consensus 151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~~aG~lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~r 230 (813)
T TIGR02374 151 AVIGGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQTAGRLLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLR 230 (813)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEE
T ss_conf 58867415889999998779706446764898999999999999999998579579861761105764156401231224
Q ss_pred --CCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCEEE
Q ss_conf --15722588899888868567557888999997698099
Q gi|254781099|r 59 --EIPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEII 96 (468)
Q Consensus 59 --~~~~~~~d~vv~Spgi~~~~~~~~~~~~~a~~~gi~v~ 96 (468)
T Consensus 231 f~DG~~l~aDlvv~A~GirP~-------~~LA~~aGl~v~ 263 (813)
T TIGR02374 231 FKDGSSLEADLVVFAAGIRPR-------DELAAEAGLKVN 263 (813)
T ss_pred CCCCCEEEECEEEEECCCCCC-------HHHHHHCCCCCC
T ss_conf 238978870379995156663-------689986597354