HHsearch alignment for GI: 254781099 and conserved domain: TIGR03127
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=94.74 E-value=0.21 Score=28.74 Aligned_cols=33 Identities=36% Similarity=0.479 Sum_probs=24.9
Q ss_pred CCCEEEEECCCHHHHHH---HHHHHHCCCEEEEEEC
Q ss_conf 89879998368548999---9999985986999818
Q gi|254781099|r 7 RNHSIAVFGLGRSGLSA---ACALKDSGVHVIAWDD 39 (468)
Q Consensus 7 ~~k~v~i~G~G~sG~s~---A~~l~~~G~~V~~~D~ 39 (468)
T Consensus 29 ~a~~I~v~G~G~Sg~ia~~~a~rL~~~G~~~~~~~d 64 (179)
T TIGR03127 29 KAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGE 64 (179)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 399099999554399999999999851975799764