HHsearch alignment for GI: 254781099 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.68 E-value=0.75 Score=24.99 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=43.2
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECC--CCC-----CCCCCCEEEEC
Q ss_conf 7999836-85489999999985986999818964788999789899645--315-----72258889988
Q gi|254781099|r 10 SIAVFGL-GRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDF--REI-----PWSIISFLVLS 71 (468)
Q Consensus 10 ~v~i~G~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~--~~~-----~~~~~d~vv~S 71 (468)
T Consensus 2 riLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~~~d~ViH~ 71 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALAGCRALFHV 71 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEE
T ss_conf 4999867779999999999978498999989998655652179779982079999999997178589761