HHsearch alignment for GI: 254781099 and conserved domain: cd05014
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=91.89 E-value=0.77 Score=24.91 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHH---HHHHHHCCCEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCEEEE-CCCCCCCCCCCCHHH
Q ss_conf 79998368548999---99999859869998189647889997898996453157225888998-888685675578889
Q gi|254781099|r 10 SIAVFGLGRSGLSA---ACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREIPWSIISFLVL-SPGIALTGENAHWCV 85 (468)
Q Consensus 10 ~v~i~G~G~sG~s~---A~~l~~~G~~V~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~-Spgi~~~~~~~~~~~ 85 (468)
T Consensus 2 RI~~~GvG~S~~va~~~~~kl~r~G~~s~~~~~~------------~~~~~~~~~i~~~Dv~i~iS--~SG~T~e~~~~~ 67 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPT------------EALHGDLGMVTPGDVVIAIS--NSGETDELLNLL 67 (128)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCCEEECCCH------------HHHHCCCCCCCCCCEEEEEE--CCCCCHHHHHHH
T ss_conf 4999942679999999999999579945754731------------55541134778999999997--999986799999
Q ss_pred HHHHHCCCEEEE
Q ss_conf 999976980998
Q gi|254781099|r 86 KLANQFNVEIIG 97 (468)
Q Consensus 86 ~~a~~~gi~v~s 97 (468)
T Consensus 68 ~~ak~~g~~vI~ 79 (128)
T cd05014 68 PHLKRRGAPIIA 79 (128)
T ss_pred HHHHHCCCCEEE
T ss_conf 999863785899