HHsearch alignment for GI: 254781099 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=92.17 E-value=0.68 Score=25.27 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=42.1
Q ss_pred EEEEECC-CHHHHHHHHHHHH-CCCEEEE-EECCCHHH--H---HHH-HCCCEEECCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 7999836-8548999999998-5986999-81896478--8---999-78989964531572258889988886856755
Q gi|254781099|r 10 SIAVFGL-GRSGLSAACALKD-SGVHVIA-WDDHPCAV--K---QAK-DMGIEVIDFREIPWSIISFLVLSPGIALTGEN 80 (468)
Q Consensus 10 ~v~i~G~-G~sG~s~A~~l~~-~G~~V~~-~D~~~~~~--~---~l~-~~g~~~~~~~~~~~~~~d~vv~Spgi~~~~~~ 80 (468)
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~DVvID-----FS~p~ 76 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLADADVLID-----FTTPE 76 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEE-----ECCHH
T ss_conf 8999889887899999999858996899999438961225431001467871112447775157888999-----06878
Q ss_pred C-CHHHHHHHHCCCEEE
Q ss_conf 7-888999997698099
Q gi|254781099|r 81 A-HWCVKLANQFNVEII 96 (468)
Q Consensus 81 ~-~~~~~~a~~~gi~v~ 96 (468)
T Consensus 77 ~~~~~~~~~~~~~~~~V 93 (122)
T pfam01113 77 ATLENLELALKHGKPLV 93 (122)
T ss_pred HHHHHHHHHHHCCCCEE
T ss_conf 99999999996799889