HHsearch alignment for GI: 254781099 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.19 E-value=0.0021 Score=42.66 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=52.8
Q ss_pred CCHHHCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHH-HCC---CEEECCCCCC--CCCCCEEEECCCC
Q ss_conf 8132189879998368548999999998598-6999818964788999-789---8996453157--2258889988886
Q gi|254781099|r 2 KLSSFRNHSIAVFGLGRSGLSAACALKDSGV-HVIAWDDHPCAVKQAK-DMG---IEVIDFREIP--WSIISFLVLSPGI 74 (468)
Q Consensus 2 ~~~~~~~k~v~i~G~G~sG~s~A~~l~~~G~-~V~~~D~~~~~~~~l~-~~g---~~~~~~~~~~--~~~~d~vv~Spgi 74 (468)
T Consensus 6 ~~~~l~~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~aT~s 85 (134)
T pfam01488 6 IFGDLKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLAEADIVISATSA 85 (134)
T ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEEECCC
T ss_conf 63881489899999609999999999975998899954757899999998499725898513544136319999992599
Q ss_pred C
Q ss_conf 8
Q gi|254781099|r 75 A 75 (468)
Q Consensus 75 ~ 75 (468)
T Consensus 86 ~ 86 (134)
T pfam01488 86 P 86 (134)
T ss_pred C
T ss_conf 9