BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] (468 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/468 (100%), Positives = 468/468 (100%) Query: 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREI 60 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREI Sbjct: 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREI 60 Query: 61 PWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTG 120 PWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTG Sbjct: 61 PWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTG 120 Query: 121 TNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTID 180 TNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTID Sbjct: 121 TNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTID 180 Query: 181 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSI 240 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSI Sbjct: 181 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSI 240 Query: 241 SRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVE 300 SRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVE Sbjct: 241 SRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVE 300 Query: 301 EIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKS 360 EIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKS Sbjct: 301 EIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKS 360 Query: 361 DDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVENVQLPS 420 DDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVENVQLPS Sbjct: 361 DDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVENVQLPS 420 Query: 421 IVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGIEMLVDIEEERKSLW 468 IVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGIEMLVDIEEERKSLW Sbjct: 421 IVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGIEMLVDIEEERKSLW 468 >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 47.4 bits (111), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 31/295 (10%) Query: 40 HPCAVKQAKDMGIEVIDFREIPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDI 99 H +K + +E ID EI LVLS A+ +N C+ A + N+ II Sbjct: 49 HKQGIKVSIGHKVENIDNAEI-------LVLS--TAIDKDNVE-CIA-ARERNIPIIFRS 97 Query: 100 ELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQL--GGNIGLPILNLEY 157 E+ R I+V+GT+GK++T +LI+ +L + +D + GG I N Sbjct: 98 EMLAGLMRCRK----SISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR- 152 Query: 158 FSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIV---TMS 214 + + V+E + I V+ NI P+HLD + K + Sbjct: 153 IGTSEWIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFY 211 Query: 215 KHAIICINDHQCEK-IAYDMN-----FIGHSISRISSQSLQSDSDLYIDESFLKCSATSE 268 A++C++ + IA N + H + I +++ S I + ++ + T + Sbjct: 212 GFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKD 271 Query: 269 --VIFDFSQE-TKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIA 320 VI D S +HNI N S V +LGL E++K+ L S G+ R + Sbjct: 272 LTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVG 326 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 31/121 (25%) Query: 116 IAVTGTNGKSSTVALISHVLRKNGY-DVQLGGNIGLPILNLEYF-------SPNRFYVIE 167 +AVTGT+GKSS + + + +++G Q+G P + F +P+ Y+ + Sbjct: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLAK 172 Query: 168 CSSY---------QIELTP---------TIDPSIGVLLNISPDHLDRHHTLENYVNIKKK 209 SY +E + I G N+ DH+D H T + Y N K + Sbjct: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 Query: 210 I 210 + Sbjct: 233 L 233 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 32.3 bits (72), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%) Query: 94 EIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLR--KNGYDV--QLGGNIG 149 +++G + R S ++ IA+TG+ GK++T +++ L K Y +IG Sbjct: 90 DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 Query: 150 LPILNLEYFSPNRFYVIECSSYQIE----LTPTIDPSIGVLLNISPDHLDRHHTLENYVN 205 +P+ F + E + LT + P I V+ I+P HL +E + Sbjct: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 Query: 206 IKKKI 210 K +I Sbjct: 209 AKAEI 213 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 28.1 bits (61), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%) Query: 85 VKLANQFNVEIIGDIELFVRER-----RFSSLQSPF----IAVTGTNGKSSTVALISHVL 135 V++AN+F+V II DI L +R RF L F I + + + + L + L Sbjct: 293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLI-ISSEENIEDLFPYKL 351 Query: 136 RKNGYDVQLGGNIGLPILNLEYFSPNRFYVIEC 168 RK +++Q + + + +Y N+ + C Sbjct: 352 RKGAFEIQRTVSRLYEMFSAQYIGKNKIIIDAC 384 >gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 27.3 bits (59), Expect = 0.56, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 8 NHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVI 55 +H I V G GR G LK +G+ ++ +D +++ + +GI+VI Sbjct: 449 DHVILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI 495 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 26.6 bits (57), Expect = 0.92, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 312 LTHRLQTIARLGHVIFINDSKAT 334 + HR+ TI H+IFI D K + Sbjct: 544 IAHRISTIIEADHIIFIEDGKVS 566 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 114 PFIAVTGTNGKSSTVALISHVLRKNGYDVQL 144 P I + GTNGK S + +L +G V + Sbjct: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 >gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 367 FPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVEN--VQLPSIV 422 F I + ++IG AMLF G I +++ + L++V++ + V +P+IV Sbjct: 251 FGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV 308 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,953 Number of Sequences: 1233 Number of extensions: 12695 Number of successful extensions: 50 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 11 length of query: 468 length of database: 328,796 effective HSP length: 77 effective length of query: 391 effective length of database: 233,855 effective search space: 91437305 effective search space used: 91437305 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)