BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781099|ref|YP_003065512.1|
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
(468 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/468 (100%), Positives = 468/468 (100%)
Query: 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREI 60
MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREI
Sbjct: 1 MKLSSFRNHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVIDFREI 60
Query: 61 PWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTG 120
PWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTG
Sbjct: 61 PWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDIELFVRERRFSSLQSPFIAVTG 120
Query: 121 TNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTID 180
TNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTID
Sbjct: 121 TNGKSSTVALISHVLRKNGYDVQLGGNIGLPILNLEYFSPNRFYVIECSSYQIELTPTID 180
Query: 181 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSI 240
PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSI
Sbjct: 181 PSIGVLLNISPDHLDRHHTLENYVNIKKKIVTMSKHAIICINDHQCEKIAYDMNFIGHSI 240
Query: 241 SRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVE 300
SRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVE
Sbjct: 241 SRISSQSLQSDSDLYIDESFLKCSATSEVIFDFSQETKKHNIQNLVTSAVVCMQLGLKVE 300
Query: 301 EIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKS 360
EIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKS
Sbjct: 301 EIKRALLSCGGLTHRLQTIARLGHVIFINDSKATNLHSVIHAFLNEKRRIYWIAGGLSKS 360
Query: 361 DDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVENVQLPS 420
DDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVENVQLPS
Sbjct: 361 DDFSTLFPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVENVQLPS 420
Query: 421 IVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGIEMLVDIEEERKSLW 468
IVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGIEMLVDIEEERKSLW
Sbjct: 421 IVLFSPGCASFDQYNNFRERGFSFMSQVSEIPGIEMLVDIEEERKSLW 468
>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 474
Score = 47.4 bits (111), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 31/295 (10%)
Query: 40 HPCAVKQAKDMGIEVIDFREIPWSIISFLVLSPGIALTGENAHWCVKLANQFNVEIIGDI 99
H +K + +E ID EI LVLS A+ +N C+ A + N+ II
Sbjct: 49 HKQGIKVSIGHKVENIDNAEI-------LVLS--TAIDKDNVE-CIA-ARERNIPIIFRS 97
Query: 100 ELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLRKNGYDVQL--GGNIGLPILNLEY 157
E+ R I+V+GT+GK++T +LI+ +L + +D + GG I N
Sbjct: 98 EMLAGLMRCRK----SISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR- 152
Query: 158 FSPNRFYVIECSSYQIELTPTIDPSIGVLLNISPDHLDRHHTLENYVNIKKKIV---TMS 214
+ + V+E + I V+ NI P+HLD + K +
Sbjct: 153 IGTSEWIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFY 211
Query: 215 KHAIICINDHQCEK-IAYDMN-----FIGHSISRISSQSLQSDSDLYIDESFLKCSATSE 268
A++C++ + IA N + H + I +++ S I + ++ + T +
Sbjct: 212 GFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKD 271
Query: 269 --VIFDFSQE-TKKHNIQNLVTSAVVCMQLGLKVEEIKRALLSCGGLTHRLQTIA 320
VI D S +HNI N S V +LGL E++K+ L S G+ R +
Sbjct: 272 LTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVG 326
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 31/121 (25%)
Query: 116 IAVTGTNGKSSTVALISHVLRKNGY-DVQLGGNIGLPILNLEYF-------SPNRFYVIE 167
+AVTGT+GKSS + + + +++G Q+G P + F +P+ Y+ +
Sbjct: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLAK 172
Query: 168 CSSY---------QIELTP---------TIDPSIGVLLNISPDHLDRHHTLENYVNIKKK 209
SY +E + I G N+ DH+D H T + Y N K +
Sbjct: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
Query: 210 I 210
+
Sbjct: 233 L 233
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 472
Score = 32.3 bits (72), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 94 EIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLR--KNGYDV--QLGGNIG 149
+++G + R S ++ IA+TG+ GK++T +++ L K Y +IG
Sbjct: 90 DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
Query: 150 LPILNLEYFSPNRFYVIECSSYQIE----LTPTIDPSIGVLLNISPDHLDRHHTLENYVN 205
+P+ F + E + LT + P I V+ I+P HL +E +
Sbjct: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
Query: 206 IKKKI 210
K +I
Sbjct: 209 AKAEI 213
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 28.1 bits (61), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 85 VKLANQFNVEIIGDIELFVRER-----RFSSLQSPF----IAVTGTNGKSSTVALISHVL 135
V++AN+F+V II DI L +R RF L F I + + + + L + L
Sbjct: 293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLI-ISSEENIEDLFPYKL 351
Query: 136 RKNGYDVQLGGNIGLPILNLEYFSPNRFYVIEC 168
RK +++Q + + + +Y N+ + C
Sbjct: 352 RKGAFEIQRTVSRLYEMFSAQYIGKNKIIIDAC 384
>gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 609
Score = 27.3 bits (59), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 8 NHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVI 55
+H I V G GR G LK +G+ ++ +D +++ + +GI+VI
Sbjct: 449 DHVILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI 495
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 26.6 bits (57), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 312 LTHRLQTIARLGHVIFINDSKAT 334
+ HR+ TI H+IFI D K +
Sbjct: 544 IAHRISTIIEADHIIFIEDGKVS 566
>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 114 PFIAVTGTNGKSSTVALISHVLRKNGYDVQL 144
P I + GTNGK S + +L +G V +
Sbjct: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 367 FPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVEN--VQLPSIV 422
F I + ++IG AMLF G I +++ + L++V++ + V +P+IV
Sbjct: 251 FGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV 308
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,953
Number of Sequences: 1233
Number of extensions: 12695
Number of successful extensions: 50
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 11
length of query: 468
length of database: 328,796
effective HSP length: 77
effective length of query: 391
effective length of database: 233,855
effective search space: 91437305
effective search space used: 91437305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)