Query         gi|254781100|ref|YP_003065513.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 366
No_of_seqs    212 out of 2824
Neff          7.0 
Searched_HMMs 39220
Date          Mon May 30 05:56:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781100.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00445 mraY phospho-N-acety 100.0       0       0  739.9  20.9  324   36-366     1-336 (336)
  2 PRK00108 mraY phospho-N-acetyl 100.0       0       0  671.2  35.6  336   22-366     1-336 (336)
  3 cd06852 GT_MraY Phospho-N-acet 100.0       0       0  525.9  29.4  279   62-361     1-279 (280)
  4 COG0472 Rfe UDP-N-acetylmuramy 100.0       0       0  497.8  26.4  307   19-366     1-316 (319)
  5 cd06856 GT_GPT_archaea UDP-Glc 100.0       0       0  442.1  23.0  262   60-359     3-280 (280)
  6 TIGR02380 ECA_wecA undecapreny 100.0       0       0  412.6  25.8  291   33-363     4-311 (349)
  7 cd06854 GT_WbpL_WbcO_like The  100.0       0       0  384.3  25.2  243   57-344     2-253 (253)
  8 cd06853 GT_WecA_like This subf 100.0       0       0  352.8  24.1  237   63-339     1-249 (249)
  9 cd06855 GT_GPT_euk UDP-GlcNAc: 100.0       0       0  346.6  17.5  259   41-334     2-269 (283)
 10 cd06851 GT_GPT_like This famil 100.0       0       0  327.2  18.3  210   61-307     4-221 (223)
 11 cd06499 GT_MraY-like Glycosylt 100.0       0       0  304.6  17.5  185   71-287     1-185 (185)
 12 cd06912 GT_MraY_like This subf 100.0       0       0  302.1  17.1  193   60-287     1-193 (193)
 13 pfam00953 Glycos_transf_4 Glyc 100.0 1.7E-38 4.4E-43  231.0  14.7  156  100-290     2-157 (158)
 14 KOG2788 consensus               99.8 9.3E-20 2.4E-24  127.6   4.2  191  101-314   103-302 (418)
 15 pfam10555 MraY_sig1 Phospho-N-  93.0   0.015 3.7E-07   32.7  -1.1   15   69-83      1-15  (26)
 16 COG4956 Integral membrane prot  86.6       2 5.1E-05   20.8   9.4   87   15-114    34-127 (356)
 17 COG4589 Predicted CDP-diglycer  48.7      18 0.00045   15.7   7.4   13  263-275   205-217 (303)
 18 TIGR02838 spore_V_AC stage V s  42.0      23 0.00057   15.1   4.1   46   75-120    26-78  (141)
 19 KOG2844 consensus               41.4      13 0.00033   16.4   1.2   16  323-338   450-465 (856)
 20 PRK09699 D-allose transporter   38.5      26 0.00065   14.7  11.0   20  337-356   215-234 (325)
 21 pfam06830 Root_cap Root cap. T  35.5      16 0.00041   15.9   0.9   29   52-80     13-41  (57)
 22 pfam11821 DUF3341 Protein of u  34.0      30 0.00078   14.3   4.3   61  201-265    59-120 (173)
 23 KOG4112 consensus               31.5      34 0.00086   14.1   3.2   30   30-59     57-86  (101)
 24 COG3715 ManY Phosphotransferas  30.8      35 0.00088   14.0   2.4   20  202-221   177-196 (265)
 25 PRK03839 putative kinase; Prov  23.0      42  0.0011   13.6   1.3   16  330-345    93-108 (180)
 26 TIGR01920 Shik_kin_archae shik  22.3      50  0.0013   13.1   2.3   52   67-118    75-137 (273)
 27 PRK11492 hyfE hydrogenase 4 me  21.9      51  0.0013   13.1   6.8   54   29-88     58-111 (213)

No 1  
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; InterPro: IPR003524   Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (mraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate.     It is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologs of mraY have been found in the archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress).; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0009252 peptidoglycan biosynthetic process, 0016020 membrane.
Probab=100.00  E-value=0  Score=739.94  Aligned_cols=324  Identities=51%  Similarity=0.885  Sum_probs=314.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHH
Q ss_conf             99998899999998622069853887311024657-8851257787779999998753567---8989998877899999
Q gi|254781100|r   36 VFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKI-DTPTMGGIIILMGLIGSSLLWADFS---SLHVSIILLLTLSFGL  111 (366)
Q Consensus        36 ~~~~~~~~I~~l~~~~~~~g~~~r~~~~~~H~~K~-~tP~~GGiai~~~~l~~~ll~~~~~---~~~~~~~l~~~l~~~l  111 (366)
                      |.+++|.+|+.+|++|  .+|++|+||||+|++|+ |||||||+.|+.++.++.+++.+..   |++.+..++.++.++.
T Consensus         1 sl~~gP~~I~~L~~Lk--a~Q~ir~dGP~SH~~K~aGtPTMGGi~i~~~~~v~~vl~~~~~seiNpyv~~~l~V~lGy~~   78 (336)
T TIGR00445         1 SLLLGPKVILKLKKLK--AGQVIREDGPKSHLKKKAGTPTMGGIMIVFAIIVSTVLWAQLLSEINPYVLVVLFVLLGYGF   78 (336)
T ss_pred             CEEECHHHHHHHHHCC--CCCEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHHHHHHHHH
T ss_conf             9145257999998415--79512045670112126756977424577999999999875300047121003343361245


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCHHHHH
Q ss_conf             99874467875313566036889999999999999986402776655666653377512110000000-12222023578
Q gi|254781100|r  112 VGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMG-LFFIPFAAFVI  190 (366)
Q Consensus       112 iG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg-~l~i~~~~~~i  190 (366)
                      +||+||+.|+.+|+|+||+||+|+..|+++|.+++.+++++..++     ..+.+..||++|..+++| ++|+++..|++
T Consensus        79 ~GF~DDy~Ki~~K~n~GL~ak~K~~~~~i~al~~~~~L~~~G~~t-----~~~~i~~Pf~k~~~~~LGtl~y~~l~~F~l  153 (336)
T TIGR00445        79 IGFVDDYRKIKRKSNKGLTAKQKLFGQIIIALIFVVWLYYYGLDT-----DATDIYIPFIKDFLFDLGTLLYILLALFVL  153 (336)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-----CEEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             545545565531157998525789999999999999998238987-----601567354002554325799999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             89985987521111665798999999999976414753466664101478834678998886778889888556741001
Q gi|254781100|r  191 VATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIF  270 (366)
Q Consensus       191 vg~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIF  270 (366)
                      ++.+||+|+|||+||||++++++++.++++++|.+||.++++|+++|.+.+..|++++|.|++||++||||||.+|||||
T Consensus       154 v~~SNAvNLTDGLDGLA~~~~~~~~gal~i~a~~~gn~~F~~YLhiP~~~~~~El~if~~A~vG~~lGFLwfN~~PA~VF  233 (336)
T TIGR00445       154 VGTSNAVNLTDGLDGLAIGPSAIAFGALAILAWATGNANFAKYLHIPKIKDSGELVIFCTALVGASLGFLWFNTYPAKVF  233 (336)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEHHHHHHHHHCCHHCCCCCCEEE
T ss_conf             86045310000013889999999999999999995151068524787221563246621778723422110328856484


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf             646108879999999999962458999999999999999999999998608------87666781228999679885158
Q gi|254781100|r  271 MGDTGSLALGAFIGGIAVSTKHEILLIIIGGLFVVETLSVIMQVGYFKMTK------KRVFLMAPIHHHFEKKGWTENQI  344 (366)
Q Consensus       271 mGD~GS~~LG~~la~~ai~~~~~~~l~ii~~i~i~~~~sviiq~~~~k~~~------kr~f~~~plHH~l~~~G~s~~~i  344 (366)
                      |||+||++||+.+|.+||++++|+++.+++++|++||+|||+||.|||.||      ||+|||||+|||||.+||||+|+
T Consensus       234 MGDtGSLALGG~l~~~Ai~~~~EiLLvi~gGvFviEtLSVIlQVgsYK~tkGPdGvGkR~FkMAPiHHHfEl~GW~E~~V  313 (336)
T TIGR00445       234 MGDTGSLALGGALGAVAILTKNEILLVIMGGVFVIETLSVILQVGSYKTTKGPDGVGKRIFKMAPIHHHFELKGWSEPRV  313 (336)
T ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCH
T ss_conf             17705588999999999998789999999999999999999987664105799740002444086210011578844501


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHCC
Q ss_conf             987789999999999-9862049
Q gi|254781100|r  345 VIRFWIISFIFAVIG-LLTLKMR  366 (366)
Q Consensus       345 v~~~~~i~~~~~~~~-i~~~k~~  366 (366)
                      |.|||+++++++++| ++++|+|
T Consensus       314 vvrFWiI~llla~~ail~t~K~R  336 (336)
T TIGR00445       314 VVRFWIISLLLALVAILATLKVR  336 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHEECC
T ss_conf             00477899999999988520059


No 2  
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00  E-value=0  Score=671.22  Aligned_cols=336  Identities=54%  Similarity=0.990  Sum_probs=320.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             99999999999999999988999999986220698538873110246578851257787779999998753567898999
Q gi|254781100|r   22 TFRSSAAFFSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIIILMGLIGSSLLWADFSSLHVSI  101 (366)
Q Consensus        22 ~fr~~~a~l~sf~i~~~~~~~~I~~l~~~~~~~g~~~r~~~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~~~~~~~~  101 (366)
                      +||+++|+++||++++++||.+||++||++  .||++|||+||+|++|+|||||||++++.+++++.+++.+.++.+.+.
T Consensus         1 ~~~~~~a~~isf~is~~~tp~~I~~~~k~~--~g~~ir~~g~~~H~~K~~tP~mGGi~i~~~~~i~~~~~~~~~~~~~~~   78 (336)
T PRK00108          1 TFRAILALLTALLISLLLGPWLIRFLRKLK--FGQPIREDGPQSHLKKAGTPTMGGILILLAIVISTLLWADLSNPYVWL   78 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             999999999999999999999999999839--999876767142177999988059999999999999997258779999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             88778999999987446787531356603688999999999999998640277665566665337751211000000012
Q gi|254781100|r  102 ILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLF  181 (366)
Q Consensus       102 ~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l  181 (366)
                      .+.+.+.++.+|++||+.|+++|+++|++||.|++.|+++|.+...+.....+       ..+++.+||+++..++++++
T Consensus        79 ~l~~~l~~~~iG~~DD~~ki~~~~~~GL~~~~Kl~~Q~~~a~i~~~~~~~~~~-------~~~~l~ipf~~~~~i~lg~l  151 (336)
T PRK00108         79 VLFVTLGFGLIGFLDDYLKVVKKNNKGLSARQKLLLQSLIALIFAVLLYFFGP-------FSTSLIIPFFKDVMLPLGFL  151 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-------CCCCEEECCCCCCCCCHHHH
T ss_conf             99999999999999989998704778977579999999999999999998277-------67506603543433026799


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             22202357889985987521111665798999999999976414753466664101478834678998886778889888
Q gi|254781100|r  182 FIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLW  261 (366)
Q Consensus       182 ~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~  261 (366)
                      +++++++|++|++||+|++||+||||+|.+++++.++++++|..++...+.+...++.++..|++++|.+++|||+||||
T Consensus       152 ~i~~~i~~ivg~~NAvNliDGLDGLA~G~~~i~~~~~~iia~~~~~~~~~~~~~~~~~~~~~~la~~~~~l~Ga~lGFL~  231 (336)
T PRK00108        152 YIPFAYFVIVGTSNAVNLTDGLDGLAIGPSVIVAAALGIIAYLQGNAVFANYLLIPYIPGAGELAIFCAALVGAGLGFLW  231 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999875503202662267789999999999999984766655554066578934899999999987778876


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             55674100164610887999999999996245899999999999999999999999860887666781228999679885
Q gi|254781100|r  262 FNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGGLFVVETLSVIMQVGYFKMTKKRVFLMAPIHHHFEKKGWTE  341 (366)
Q Consensus       262 fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~~~~l~ii~~i~i~~~~sviiq~~~~k~~~kr~f~~~plHH~l~~~G~s~  341 (366)
                      ||+|||||||||+||+++|+.+|++++++++|+++++++++|++|++|||+||.+||.+|||+|||+|+|||||++||||
T Consensus       232 ~N~~PAkIFMGDtGSl~LG~~la~~ai~~~~~~~l~i~~~i~v~e~~sviiqv~~~k~~gkrif~m~PlHHh~e~~G~se  311 (336)
T PRK00108        232 FNAYPAKVFMGDTGSLALGGALGAIAVLLRQEILLLIIGGVFVIETLSVILQVGSFKLTGKRIFRMAPIHHHFELKGWSE  311 (336)
T ss_pred             CCCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
T ss_conf             27982737136727799999999999997467999999999999999999998889960884677787299999779994


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             1589877899999999999862049
Q gi|254781100|r  342 NQIVIRFWIISFIFAVIGLLTLKMR  366 (366)
Q Consensus       342 ~~iv~~~~~i~~~~~~~~i~~~k~~  366 (366)
                      +|+|.++|+++.+++++|++.++.|
T Consensus       312 ~~iv~~f~~i~~~~~~~~~~~~~~~  336 (336)
T PRK00108        312 TKVVVRFWIITLILVLIGLATLKLR  336 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             3168999999999999999995079


No 3  
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00  E-value=0  Score=525.94  Aligned_cols=279  Identities=55%  Similarity=0.990  Sum_probs=255.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             31102465788512577877799999987535678989998877899999998744678753135660368899999999
Q gi|254781100|r   62 NLPIHARKIDTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFII  141 (366)
Q Consensus        62 ~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~~~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~  141 (366)
                      +|++|++|+||||+||++++.+++++.+++.+.++.+.+..+.+++.++++|++||+.|+++|+++|+||+.|+..|+++
T Consensus         1 ~~~~h~~K~~TP~~GGlai~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~iGl~DD~~~i~~~~~~gl~~~~Kl~~q~~~   80 (280)
T cd06852           1 GPKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLI   80 (280)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             98311359999870799999999999999998457699999999999999999875888872156788776899999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986402776655666653377512110000000122220235788998598752111166579899999999997
Q gi|254781100|r  142 AILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFI  221 (366)
Q Consensus       142 a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii  221 (366)
                      |.+.........+....       ...|++.....+.++++++++++|+++++||+|++||+||||+|++.+++.+++++
T Consensus        81 a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ti~~iv~~~Na~N~iDGlDGLa~g~~~i~~~~l~~i  153 (280)
T cd06852          81 AIVFALLLYYFNGSGTL-------ITLPFFKNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAII  153 (280)
T ss_pred             HHHHHHHHHHCCCCCCC-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999974664444-------00465433210379999999999999998888976244206689999999999999


Q ss_pred             HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64147534666641014788346789988867788898885567410016461088799999999999624589999999
Q gi|254781100|r  222 AYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGG  301 (366)
Q Consensus       222 ~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~~~~l~ii~~  301 (366)
                      ++..++..              +++.++.+++|||+|||+||+|||||||||+||+++|+.+|++++.+++|...+++++
T Consensus       154 ~~~~~~~~--------------~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~LG~~la~~ai~~~~~~~~~~~~~  219 (280)
T cd06852         154 AYLAGNAV--------------FLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGG  219 (280)
T ss_pred             HHHHCCHH--------------HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99816826--------------9999999999999999984188163765785278999999999999766699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999986088766678122899967988515898778999999999998
Q gi|254781100|r  302 LFVVETLSVIMQVGYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVIGLL  361 (366)
Q Consensus       302 i~i~~~~sviiq~~~~k~~~kr~f~~~plHH~l~~~G~s~~~iv~~~~~i~~~~~~~~i~  361 (366)
                      +|++|+++|++||.++|++|||+|+|+|+|||+|++||||+|+|+++|.++.+++.+|+.
T Consensus       220 i~~~~~l~~~i~~~~~r~~~~~~f~~~plHH~l~~~G~s~~~~v~~~~~is~~~~~~~i~  279 (280)
T cd06852         220 VFVIEALSVILQVGSFKLTGKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLL  279 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999288878889739999876987589999999999999999996


No 4  
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=497.81  Aligned_cols=307  Identities=48%  Similarity=0.720  Sum_probs=255.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCH
Q ss_conf             9999999999999999999998899999998622069853887311024657885125778777999999875356-789
Q gi|254781100|r   19 KYVTFRSSAAFFSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIIILMGLIGSSLLWADF-SSL   97 (366)
Q Consensus        19 ~~~~fr~~~a~l~sf~i~~~~~~~~I~~l~~~~~~~g~~~r~~~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~-~~~   97 (366)
                      +|.++|.  +++++++++++++|.+++++||.+..  | .|+|+||.|++  +||||||++|+.+++++.+++.+. ++.
T Consensus         1 ~~~~~~~--~~i~a~~~s~~~~p~~~~~~~~~~~~--~-~~~~~~k~H~~--~tP~mGGl~I~~~~~~~~~l~~~~~~~~   73 (319)
T COG0472           1 MYLTFRA--ALIISFVISLILTPILIKFLRKLGLG--D-IPEDGPKSHKK--GTPTMGGLAILLSILLASLLAANLLTNP   73 (319)
T ss_pred             CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCC--C-CCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             9389999--99999999999999999999982324--6-87767545799--9997644999999999999998721222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             8999887789999999874467875313566036889999999999-999986402776655666653377512110000
Q gi|254781100|r   98 HVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAI-LAVCALLFYSNSTLLGIETKTSIVFPFFRDIIL  176 (366)
Q Consensus        98 ~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~-i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l  176 (366)
                      +.+..+.....++.+|++||+.|+        +++.|.+.|...+. +............      ......|++..   
T Consensus        74 ~~~~~ll~~~~~~~iG~lDD~~~l--------~~~~r~l~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~---  136 (319)
T COG0472          74 YVWLVLLGLLGFGLIGFLDDRLKL--------SPKIRGLIQKLKALLLIIALGELPIKFL------DIPLGIPFFKL---  136 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCHHHH---
T ss_conf             899999999999999999727650--------3888679999999999999998878744------56433307887---


Q ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             000-1222202357889985987521111665798999999999976414753466664101478834678998886778
Q gi|254781100|r  177 DMG-LFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGA  255 (366)
Q Consensus       177 ~lg-~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga  255 (366)
                       .+ ++++++++++++|.+||+|++||+||||+|++.+++.+++.+++..++.               |.+++|++++||
T Consensus       137 -~~~~~~~~~~~~~ivg~sNAvNl~DGlDGLa~g~~~i~~~~~~~i~~~~~~~---------------~~~~~~~al~ga  200 (319)
T COG0472         137 -PGPLLFILFAVFAIVGASNAVNLTDGLDGLAAGLSAIALLALALIALLQGLG---------------ELALICAALAGA  200 (319)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCH---------------HHHHHHHHHHHH
T ss_conf             -8999999999999999978999862650278899999999999999983216---------------799999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHH
Q ss_conf             8898885567410016461088799999999999624589999999--999999999999999986088766-6781228
Q gi|254781100|r  256 GIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGG--LFVVETLSVIMQVGYFKMTKKRVF-LMAPIHH  332 (366)
Q Consensus       256 ~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~~~~l~ii~~--i~i~~~~sviiq~~~~k~~~kr~f-~~~plHH  332 (366)
                      |+||||||+|||||||||+||+++|+.+|+++++.++|..+.+.+.  +|++|++++++||.++|. ++|.- +|+|+||
T Consensus       201 ~LGFL~~N~~PAkIFmGDtGSl~LG~~la~iail~~~~~~l~~~~~~~v~v~et~~vil~r~~~~~-~~~~~~~~~~~HH  279 (319)
T COG0472         201 CLGFLWFNFYPAKIFMGDTGSLALGAALAAIALLLKQEILLAIIGPLGVPVIETLSVILRRLSFKL-KPIRLPDMAHLHH  279 (319)
T ss_pred             HHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC-CCCCCCCCCCCCH
T ss_conf             887987507850504773656999999999999996058899996305687651313146555277-7777767788628


Q ss_pred             HHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999679---8851589877899999999999862049
Q gi|254781100|r  333 HFEKKG---WTENQIVIRFWIISFIFAVIGLLTLKMR  366 (366)
Q Consensus       333 ~l~~~G---~s~~~iv~~~~~i~~~~~~~~i~~~k~~  366 (366)
                      |+|+.|   |+|+|++.++|+++++++.+++...|.|
T Consensus       280 ~~~~~g~~~~~e~~vv~~~w~i~~i~~~i~l~~~~~~  316 (319)
T COG0472         280 HLELKGLSEWSERQVVLRFWLISLILALIALLLLKSR  316 (319)
T ss_pred             HHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9997476556665211678999999999999996243


No 5  
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=100.00  E-value=0  Score=442.08  Aligned_cols=262  Identities=25%  Similarity=0.389  Sum_probs=221.3

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             8731102465788512577877799999987535678-989998877899999998744678753135660368899999
Q gi|254781100|r   60 VPNLPIHARKIDTPTMGGIIILMGLIGSSLLWADFSS-LHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIE  138 (366)
Q Consensus        60 ~~~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~~~-~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q  138 (366)
                      +|-+|.|  |++||||||++++.+++++.+++...++ .+.+..+.+.+.++++|++||+.        +++++.|+..|
T Consensus         3 ~D~~K~~--~~~iP~~GGi~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD~~--------~l~~~~Kl~~q   72 (280)
T cd06856           3 RDVHKPG--KPEVPEMGGIAVLLGFSLGLLFLSALTHSVEALALLITSLLAGLIGLLDDIL--------GLSQSEKVLLT   72 (280)
T ss_pred             CCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHH
T ss_conf             9888889--8899873299999999999999999535299999999999999999998750--------68699999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999986402776655666653377512110000000122220235788998598752111166579899999999
Q gi|254781100|r  139 FIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAF  218 (366)
Q Consensus       139 ~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l  218 (366)
                      .+++............           ...|+.  ...+.++++++++.+++++++||+|++||+||||+|++++++.++
T Consensus        73 ~~~a~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l  139 (280)
T cd06856          73 ALPAIPLLVLKAGNPL-----------TSLPIG--GRVLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLAL  139 (280)
T ss_pred             HHHHHHHHHHHHHCCC-----------CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999999872543-----------347520--355578999999999999997788885155027789999999999


Q ss_pred             HHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99764147534666641014788346789988867788898885567410016461088799999999999624589999
Q gi|254781100|r  219 SFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLII  298 (366)
Q Consensus       219 ~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~~~~l~i  298 (366)
                      +++++..+|.               |.+.+|.+++|||+||||||+|||||||||+||+++|+.+|++++++++|..+++
T Consensus       140 ~~i~~~~~~~---------------~~~~~~~~l~ga~lgFL~~N~~PAkIFmGDtGSl~lG~~la~~aIl~~~e~~l~i  204 (280)
T cd06856         140 AIILLINGDY---------------DALIIALILVAALLAFLLYNKYPAKVFPGDVGTLPIGALIGTIAVLGGLEIILLI  204 (280)
T ss_pred             HHHHHHCCCH---------------HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             9999974869---------------9999999999998898872077151870658789999999999999751999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCC-------------CCCCHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998608876-------------667812289996798--85158987789999999999
Q gi|254781100|r  299 IGGLFVVETLSVIMQVGYFKMTKKRV-------------FLMAPIHHHFEKKGW--TENQIVIRFWIISFIFAVIG  359 (366)
Q Consensus       299 i~~i~i~~~~sviiq~~~~k~~~kr~-------------f~~~plHH~l~~~G~--s~~~iv~~~~~i~~~~~~~~  359 (366)
                      +++++++|+++++.|+.++|.|+||.             ++++|+|||++..+|  +|+|+|.++|+++++|++++
T Consensus       205 ~~~~~vie~l~~i~q~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~hhh~~~~~~~~~E~~vv~~~w~i~~~~~ila  280 (280)
T cd06856         205 LLLPYVIDFLLKLRSKGGGKEHREKPTKVLEDGTLYPPPDKSSLLTLRLLLRKGPMTEKEVVLVLWALEALLGILA  280 (280)
T ss_pred             HHHHHHHHHHHHHHEEEEEEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             9999999999988723688872201254466675367765667157899971699984617899999999999959


No 6  
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; InterPro: IPR012750    Members of this family are the WecA enzymes of enterobacterial common antigen (ECA) biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyse the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown to be critical to enzymatic activity for WecA  is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyse the same reaction as WecA. ; GO: 0000287 magnesium ion binding, 0016780 phosphotransferase activity for other substituted phosphate groups, 0030145 manganese ion binding, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=412.63  Aligned_cols=291  Identities=23%  Similarity=0.365  Sum_probs=249.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             999999988999999986220698538873110246578851257787779-9999987535678989998877899999
Q gi|254781100|r   33 MLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIIILMG-LIGSSLLWADFSSLHVSIILLLTLSFGL  111 (366)
Q Consensus        33 f~i~~~~~~~~I~~l~~~~~~~g~~~r~~~~~~H~~K~~tP~~GGiai~~~-~l~~~ll~~~~~~~~~~~~l~~~l~~~l  111 (366)
                      ++.+|+.+-..+=.+||.+.+.|.+|||+.||+|+.  -+|..||+.++.+ +......+.+..+ ..++.++++..+..
T Consensus         4 li~iFL~sF~~LF~~RkvA~~vGLVDKPn~RK~H~G--~iPLVGGiSif~~nLc~~l~~~~~~i~-~~~LyL~ca~~Lv~   80 (349)
T TIGR02380         4 LIVIFLSSFLTLFLMRKVAKIVGLVDKPNARKRHQG--VIPLVGGISIFLTNLCITLLLHDELIP-HLSLYLACATILVV   80 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf             878999999999998675312057268888765545--413330199999999999977555651-03789999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCHHHHH
Q ss_conf             99874467875313566036889999999999999986402776655666653377512110000000-12222023578
Q gi|254781100|r  112 VGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMG-LFFIPFAAFVI  190 (366)
Q Consensus       112 iG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg-~l~i~~~~~~i  190 (366)
                      +|.+||+.|        +|.+.|+..|..++++.......+-+    ++.       ..++..++.+| +++.++|+|++
T Consensus        81 iG~lDDrfD--------isv~iR~~IQa~vs~vMi~~G~~~L~----sLG-------~i~g~~el~LgP~~g~iITiFAv  141 (349)
T TIGR02380        81 IGVLDDRFD--------ISVKIRLAIQAAVSIVMIQFGNIYLH----SLG-------NIFGSKELTLGPLFGYIITIFAV  141 (349)
T ss_pred             HHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHCCCCHH----HCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             852320226--------78207799999999999985472523----155-------30204688887678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----C
Q ss_conf             89985987521111665798999999999976414753466664101478834678998886778889888556-----7
Q gi|254781100|r  191 VATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNI-----S  265 (366)
Q Consensus       191 vg~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~-----~  265 (366)
                      +|.+||+||+||+|||.||.+++++++++.+.|..||.               |++..|.+++-|.+.|+.-|.     +
T Consensus       142 ~gAINAFNMvDGIDGLLGGLs~V~F~ALg~Lf~~dg~~---------------~La~~c~~~i~A~lPYl~LNLGiplGr  206 (349)
T TIGR02380       142 IGAINAFNMVDGIDGLLGGLSCVTFAALGYLFYLDGQV---------------ELAYWCFALIVAILPYLLLNLGIPLGR  206 (349)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH---------------HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99986124534310344589999999999998616626---------------899999999999988999846663468


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHH
Q ss_conf             410016461088799999999999624--------5899999999999999999999999860887666--781228999
Q gi|254781100|r  266 PAVIFMGDTGSLALGAFIGGIAVSTKH--------EILLIIIGGLFVVETLSVIMQVGYFKMTKKRVFL--MAPIHHHFE  335 (366)
Q Consensus       266 PAkIFmGD~GS~~LG~~la~~ai~~~~--------~~~l~ii~~i~i~~~~sviiq~~~~k~~~kr~f~--~~plHH~l~  335 (366)
                      +=||||||+||+++||++-|+.+.+.|        |++.+|+-++|.+|+.+.|+||.   ++|++|||  |.|+||.++
T Consensus       207 k~KVFMGDAGS~~IGFTViWLLl~~tQg~~~p~~~PVTALWlIA~PLmDM~aIm~RR~---rkG~SPFkPDR~HlHH~~~  283 (349)
T TIGR02380       207 KFKVFMGDAGSTLIGFTVIWLLLEATQGESSPSMRPVTALWLIALPLMDMAAIMLRRI---RKGDSPFKPDREHLHHILQ  283 (349)
T ss_pred             CCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHHHHHHH
T ss_conf             8603115600157889999998720013665788740579998614777999999874---2777769777356879998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6798851589877899999999999862
Q gi|254781100|r  336 KKGWTENQIVIRFWIISFIFAVIGLLTL  363 (366)
Q Consensus       336 ~~G~s~~~iv~~~~~i~~~~~~~~i~~~  363 (366)
                      +.|+|.||+.+.+...|++++.+|+.+.
T Consensus       284 r~GLtSRq~L~vIc~~a~l~A~iGI~se  311 (349)
T TIGR02380       284 RLGLTSRQSLVVICLAAALLAAIGILSE  311 (349)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7077277999999999999998768987


No 7  
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=100.00  E-value=0  Score=384.30  Aligned_cols=243  Identities=27%  Similarity=0.393  Sum_probs=202.9

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             538873110246578851257787779999998753---56789899988778999999987446787531356603688
Q gi|254781100|r   57 PVRVPNLPIHARKIDTPTMGGIIILMGLIGSSLLWA---DFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKV  133 (366)
Q Consensus        57 ~~r~~~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~---~~~~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~  133 (366)
                      .|+|++||.|  |++|||+||++++.+++++.+++.   ..++.+.+..+.+...++++|++||+.        ++||+.
T Consensus         2 vD~P~~Rk~H--~~~tP~~GGi~i~~~~~i~~~~~~~~~~~~~~~~~~ll~~~~~~~~iGl~DD~~--------~l~~~~   71 (253)
T cd06854           2 LDIPNERSSH--TKPTPRGGGIAFVLAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLR--------SLSPKI   71 (253)
T ss_pred             CCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHH
T ss_conf             6799998889--999887519999999999999999835521289999999999999999999760--------687779


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999864027766556666533775121100000001222202357889985987521111665798999
Q gi|254781100|r  134 RILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMI  213 (366)
Q Consensus       134 Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i  213 (366)
                      |+..|++++.+.+........                 .+.....+++.++++++|+++.+||+|++||+||||+|.+++
T Consensus        72 kl~~q~~~~~~~i~~~~~~~~-----------------~~~~~~~~~~~~~~ti~~iv~~iNa~N~iDGiDGLa~g~~~i  134 (253)
T cd06854          72 RLLVQLLAAALALYALGPLTS-----------------LLLNFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALV  134 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999999999999999875111-----------------000121489999999999999999999971751178899999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf             9999999764147534666641014788346789988867788898885567410016461088799999999999624-
Q gi|254781100|r  214 ASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKH-  292 (366)
Q Consensus       214 ~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~-  292 (366)
                      ++.++..+++..++.               +...++.+++|+++|||+||+||||+||||+||+++|+.+|++++...+ 
T Consensus       135 ~~~~l~~i~~~~~~~---------------~~~~~~~~l~~~ll~Fl~~N~~pakiFmGDsGS~~lG~~l~~~~i~~~~~  199 (253)
T cd06854         135 VFLALALLGYLAGEP---------------ALALLALALAGALLGFLPFNWPPAKIFMGDVGSTFLGFLLAALLLLLALS  199 (253)
T ss_pred             HHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999845666---------------89999999999988899870775767625607899999999999998435


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHCCCCCCHH
Q ss_conf             ---5899999999999999999999999860887666--781228999679885158
Q gi|254781100|r  293 ---EILLIIIGGLFVVETLSVIMQVGYFKMTKKRVFL--MAPIHHHFEKKGWTENQI  344 (366)
Q Consensus       293 ---~~~l~ii~~i~i~~~~sviiq~~~~k~~~kr~f~--~~plHH~l~~~G~s~~~i  344 (366)
                         +...++...+|+.|++.++++|.   .+||++|+  +.|+||+++++|+||||+
T Consensus       200 ~~~~~~~l~~~~~~~~D~~~v~~~R~---~~~~~p~~~D~~Hlhh~L~~~G~s~~~v  253 (253)
T cd06854         200 GQSPWAWLLLLSPFLVDATVTLLRRL---LRGENIFQAHRKHLYQRLARAGKSHRKV  253 (253)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf             52599999999999999999999999---8699999999867899998768997889


No 8  
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=100.00  E-value=0  Score=352.83  Aligned_cols=237  Identities=32%  Similarity=0.482  Sum_probs=192.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             11024657885125778777999999875356---789899988778999999987446787531356603688999999
Q gi|254781100|r   63 LPIHARKIDTPTMGGIIILMGLIGSSLLWADF---SSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEF  139 (366)
Q Consensus        63 ~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~---~~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~  139 (366)
                      ||.|  |++|||+||++++.+++++..++...   .+.+....+.+...++++|++||+.        ++||+.|+..|+
T Consensus         1 Rk~H--~~~tP~~GGi~i~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD~~--------~l~~~~Rl~~q~   70 (249)
T cd06853           1 RKVH--KGPIPRLGGLAIFLGFLLALLLALLFPFFLLPELLGLLAGATIIVLLGLLDDLF--------DLSPKVKLLGQI   70 (249)
T ss_pred             CCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHH
T ss_conf             9999--999898119999999999999999863010489999999999999999999830--------598999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999864027766556666533775121100000001222202357889985987521111665798999999999
Q gi|254781100|r  140 IIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFS  219 (366)
Q Consensus       140 i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~  219 (366)
                      +++.+.+........           ...+++ +.....++++++++++++++.+||+|++||+|||+++++.+++.++.
T Consensus        71 ~~~~l~i~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~t~~~i~~~iNa~N~iDGidGLa~~~~~i~~~~~~  138 (249)
T cd06853          71 LAALIVVFGGGVILS-----------LLGPFG-GGIILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALA  138 (249)
T ss_pred             HHHHHHHHHHHHHHH-----------HCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999668876-----------235401-46653789999999999999999999862753024699999999999


Q ss_pred             HHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-------
Q ss_conf             9764147534666641014788346789988867788898885567410016461088799999999999624-------
Q gi|254781100|r  220 FIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKH-------  292 (366)
Q Consensus       220 ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~-------  292 (366)
                      ++++..++..               ...++.+++|+++|||+||+||||+||||+||+++|+.+|+.++...+       
T Consensus       139 ~~~~~~~~~~---------------~~~~~~~l~~~ll~Fl~fN~~~akiFlGD~GS~~lG~~i~~~~i~~~~~~~~~~~  203 (249)
T cd06853         139 ILALLNGQVL---------------VALLALALAGALLGFLPYNFHPARIFMGDAGSLFLGFLLAVLSILGTQKSSTAIS  203 (249)
T ss_pred             HHHHHCCCHH---------------HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             9999845588---------------9999999999999999870543202157732789999999999999723662688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHCCC
Q ss_conf             5899999999999999999999999860887666--7812289996798
Q gi|254781100|r  293 EILLIIIGGLFVVETLSVIMQVGYFKMTKKRVFL--MAPIHHHFEKKGW  339 (366)
Q Consensus       293 ~~~l~ii~~i~i~~~~sviiq~~~~k~~~kr~f~--~~plHH~l~~~G~  339 (366)
                      +...+++..+|+.|++.++++|.   .+||++|+  +.|+||+++++|.
T Consensus       204 ~~~~~~~l~~p~~D~~~~~~~R~---~~~~~~~~~d~~H~hh~l~~~G~  249 (249)
T cd06853         204 PVVPLLILAVPLFDTLFVIIRRL---LRGRSPFQADRDHLHHRLLRLGL  249 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCHHHHHHHCCC
T ss_conf             99999999999999999999999---86999888998668999988769


No 9  
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=100.00  E-value=0  Score=346.59  Aligned_cols=259  Identities=15%  Similarity=0.249  Sum_probs=190.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH------HHCCCCCH---HHHHHHHHHHHHHH
Q ss_conf             8999999986220698538873110246578851257787779999998------75356789---89998877899999
Q gi|254781100|r   41 PKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIIILMGLIGSSL------LWADFSSL---HVSIILLLTLSFGL  111 (366)
Q Consensus        41 ~~~I~~l~~~~~~~g~~~r~~~~~~H~~K~~tP~~GGiai~~~~l~~~l------l~~~~~~~---~~~~~l~~~l~~~l  111 (366)
                      |.+++.+.|.+ ..||..|+++++.      +|++||+....+++++..      .+...++.   +.+..+.+...+++
T Consensus         2 P~~~~~~~k~~-l~G~Di~K~~~~~------vpe~gGi~~~~~fli~~~~~i~~~~~~~~~~~~~~~~~~~Ll~~~~~~l   74 (283)
T cd06855           2 PKFGPLFIKAG-LYGIDLNKNGEEK------IPESAGLVPGIVFLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTF   74 (283)
T ss_pred             CCHHHHHHHCC-CEEECCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             60389999868-9531688899986------8754488999999999999999988513523779999999999999976


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             99874467875313566036889999999999999986402776655666653377512110000000122220235788
Q gi|254781100|r  112 VGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIV  191 (366)
Q Consensus       112 iG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~iv  191 (366)
                      +|++||..|        ++||.|+.+|.++++........  .....    ......+.+.+..+++|++++++++++++
T Consensus        75 lGf~DD~~~--------L~~r~Kl~l~~~aalpl~~~y~~--~~~~~----~~~~~~~~~~~~~i~lg~ly~~~~~~~~v  140 (283)
T cd06855          75 LGFADDVLD--------LRWRHKLILPTFASLPLLMVYYG--NTGIT----LPIVPLRPLLGTLIDLGILYYVYMILLAV  140 (283)
T ss_pred             HEEEECCCC--------CCHHHHHHHHHHHHHHHHHHHCC--CCCEE----EECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             414502012--------56898989999999998885103--65036----50477765556620037999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99859875211116657989999999999764147534666641014788346789988867788898885567410016
Q gi|254781100|r  192 ATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFM  271 (366)
Q Consensus       192 g~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFm  271 (366)
                      +.+||+|++||+||||+|++++++.++.+.++...+....    .....+..+.+.++.+++|+++||||||+|||||||
T Consensus       141 ~~tNaiNl~dGldGLa~G~s~i~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~lgFL~~N~yPAkIFm  216 (283)
T cd06855         141 FCTNSINIYAGINGLEVGQSLVIALSILLYNLLELNGSSG----SMTLDAHLFSLYLLLPFIAVSLALLYYNWYPSKVFV  216 (283)
T ss_pred             HHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf             8242102340663077789999999999999998601221----233331499999999999999999872378463744


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             461088799999999999624589999999999999999999999986088766678122899
Q gi|254781100|r  272 GDTGSLALGAFIGGIAVSTKHEILLIIIGGLFVVETLSVIMQVGYFKMTKKRVFLMAPIHHHF  334 (366)
Q Consensus       272 GD~GS~~LG~~la~~ai~~~~~~~l~ii~~i~i~~~~sviiq~~~~k~~~kr~f~~~plHH~l  334 (366)
                      ||+||+++|+++|+++|+.+.|...++          +++.|+..|+.++||.||+.|.|||=
T Consensus       217 GDtgs~~lG~~la~v~IlG~~~~~~~~----------~~ipqiinF~~s~~~lF~~~p~~~Hr  269 (283)
T cd06855         217 GDTFTYFAGMVFAVVGILGHFSKTLLL----------FFIPQIINFLYSLPQLFGIVPCPRHR  269 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHEECCCEEEEEECCCCCC
T ss_conf             552778889999999998318999999----------99999865012256178640166667


No 10 
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=100.00  E-value=0  Score=327.23  Aligned_cols=210  Identities=25%  Similarity=0.315  Sum_probs=170.9

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             73110246578851257787779999998753567--------8989998877899999998744678753135660368
Q gi|254781100|r   61 PNLPIHARKIDTPTMGGIIILMGLIGSSLLWADFS--------SLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGK  132 (366)
Q Consensus        61 ~~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~~--------~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~  132 (366)
                      |.+|.|  |+++||+||++++.+++++.+.+...+        ..+.+..+.+...++.+|++||++        ++++|
T Consensus         4 D~~K~~--~~~IP~~GGiai~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iG~~DD~~--------~l~~~   73 (223)
T cd06851           4 DMNKKG--NVMIPEPGGISILIGFVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRL--------TMGGW   73 (223)
T ss_pred             CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCC--------CCCHH
T ss_conf             878899--99986816999999999999999982101122002999999999999998057631267--------88799


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999986402776655666653377512110000000122220235788998598752111166579899
Q gi|254781100|r  133 VRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVM  212 (366)
Q Consensus       133 ~Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~  212 (366)
                      .|+..|..++...........           ....|+++ ...+.++++++++.+|+++++||+|++||+||||+|+++
T Consensus        74 ~kl~~~~~~a~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~ivg~~Na~NliDGlDGLa~g~~~  141 (223)
T cd06851          74 FKPVALAFAAAPILLLGAYDS-----------NLDFPLFG-GSVKIPSLYLVLVVFMIVITGNAFNSIAGLNGVEAGFTT  141 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC-----------CCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             999999999999999998536-----------61167654-311003899999999999997788841365017789999


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999764147534666641014788346789988867788898885567410016461088799999999999624
Q gi|254781100|r  213 IASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKH  292 (366)
Q Consensus       213 i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~  292 (366)
                      +++.+++++++..++.               +.+.+|.+++|||+|||+||+|||||||||+||+++|+.+|+++++++.
T Consensus       142 i~~~~l~~~~~~~~~~---------------~~~~~~~~l~ga~lgFL~~N~~PAkIFmGD~GS~~lG~~la~lailg~~  206 (223)
T cd06851         142 IISFALAISLLVQQNY---------------EIGIACLCLAFASLAFLYYNKYPSRIFPGDTGAYMFGATYAVVAILGEV  206 (223)
T ss_pred             HHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999995779---------------9999999999999999985268053770657779999999999999848


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             589999999999999
Q gi|254781100|r  293 EILLIIIGGLFVVET  307 (366)
Q Consensus       293 ~~~l~ii~~i~i~~~  307 (366)
                      |...++...+.++|-
T Consensus       207 ~~~~~~l~iP~ii~f  221 (223)
T cd06851         207 EKIAAVAFIPAIINF  221 (223)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999986


No 11 
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=100.00  E-value=0  Score=304.64  Aligned_cols=185  Identities=41%  Similarity=0.662  Sum_probs=159.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88512577877799999987535678989998877899999998744678753135660368899999999999999864
Q gi|254781100|r   71 DTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALL  150 (366)
Q Consensus        71 ~tP~~GGiai~~~~l~~~ll~~~~~~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~i~~~~l~  150 (366)
                      ||||+||++++.+++++.+++...++.+.+..+.+.+.++++|++||+.|++    .++|+|.|+..|++++........
T Consensus         1 PtP~~GGiai~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~G~iDD~~~l~----~~~~~~~kl~~q~~~~~~~~~~~~   76 (185)
T cd06499           1 PTPTMGGLAILLGFLLGVLLYIPHSNTLILLALLSGLVAGIVGFIDDLLGLK----VELSEREKLLLQILAALFLLLIGG   76 (185)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9698569999999999999998745569999999999999999997773256----577789999999999999999999


Q ss_pred             HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             02776655666653377512110000000122220235788998598752111166579899999999997641475346
Q gi|254781100|r  151 FYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILL  230 (366)
Q Consensus       151 ~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~  230 (366)
                      .....           ..|+  +...++++++++++++++++.+||+|++||+||||+|++++++.+++.+++..++.. 
T Consensus        77 ~~~~~-----------~~~~--~~~~~~~~~~~~~tv~~iv~~~Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~-  142 (185)
T cd06499          77 GHTTV-----------TTPL--GFVLDLGIFYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASIACALFALLSGQTT-  142 (185)
T ss_pred             HHHCC-----------CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHH-
T ss_conf             83243-----------5663--311236899999999999999999897506651768999999999999999907688-


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             666410147883467899888677888988855674100164610887999999999
Q gi|254781100|r  231 SHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIA  287 (366)
Q Consensus       231 ~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~a  287 (366)
                                    ...+|.+++|+++|||+||+||||+||||+||+++|+.+|++|
T Consensus       143 --------------~~~~~~~l~g~~lgFL~~N~~pakIFmGD~GS~~lG~~la~~A  185 (185)
T cd06499         143 --------------SALLFIILAGACLGFLYFNFYPAKIFMGDTGSYFLGAAYAAVA  185 (185)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHC
T ss_conf             --------------9999999999999999986684216316575799999999939


No 12 
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=100.00  E-value=0  Score=302.11  Aligned_cols=193  Identities=33%  Similarity=0.529  Sum_probs=158.0

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87311024657885125778777999999875356789899988778999999987446787531356603688999999
Q gi|254781100|r   60 VPNLPIHARKIDTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEF  139 (366)
Q Consensus        60 ~~~~~~H~~K~~tP~~GGiai~~~~l~~~ll~~~~~~~~~~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~  139 (366)
                      |++||.|  |+||||+||++++.+++++.+.....++...+..+...+.++++|++||++|       .++++.|+..|+
T Consensus         1 dg~Rk~H--~~~tP~~GGi~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~iG~~DD~~~-------~~~~~~rl~~q~   71 (193)
T cd06912           1 DGIQKFH--TRPTPRIGGVAIFLGLLAGLLLLSLLSGSLLLLLLLAALPAFLAGLLEDITK-------RVSPRIRLLATF   71 (193)
T ss_pred             CCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHH
T ss_conf             9998775--9699873499999999999999998411799999999999999998997235-------430789999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999864027766556666533775121100000001222202357889985987521111665798999999999
Q gi|254781100|r  140 IIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFS  219 (366)
Q Consensus       140 i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~  219 (366)
                      .++.+..........          ....++. +...+.++++++++++|+++.+||+|++||+|||++|++++++.++.
T Consensus        72 ~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~ti~~i~~~iNa~N~~DGiDGLa~g~~~i~~~~l~  140 (193)
T cd06912          72 LSALLAVWLLGASIT----------RLDLPGL-DLLLSFPPFAIIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLA  140 (193)
T ss_pred             HHHHHHHHHHHHHHH----------HCCCCCC-CHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999977765----------2556552-06864118999998999999987878751775336899999999999


Q ss_pred             HHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             97641475346666410147883467899888677888988855674100164610887999999999
Q gi|254781100|r  220 FIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIA  287 (366)
Q Consensus       220 ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~a  287 (366)
                      .+++..++.               +...++.+++|+++|||+||+||||+||||+||+++|+.+|++|
T Consensus       141 ~~~~~~~~~---------------~~~~~~~~l~~~~lgFL~~N~~pakiFmGDsGS~~lG~~la~la  193 (193)
T cd06912         141 LVAFQVGDT---------------DLAFLALLLAGALLGFLIFNFPFGKIFLGDGGAYLLGFLLAWLA  193 (193)
T ss_pred             HHHHHCCCH---------------HHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHC
T ss_conf             999972758---------------99999999999999999987793306256287899999999979


No 13 
>pfam00953 Glycos_transf_4 Glycosyl transferase family 4.
Probab=100.00  E-value=1.7e-38  Score=230.96  Aligned_cols=156  Identities=42%  Similarity=0.571  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             99887789999999874467875313566036889999999999999986402776655666653377512110000000
Q gi|254781100|r  100 SIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMG  179 (366)
Q Consensus       100 ~~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iPf~~~~~l~lg  179 (366)
                      +..+.++..++++|++||++        ++||+.|+..|++++...........+           ...|+.+ .....+
T Consensus         2 ~~il~~~~~~~~iG~~DD~~--------~l~~~~rl~~~~i~~~~~i~~~~~~~~-----------~~~~~~~-~~~~~~   61 (158)
T pfam00953         2 LGLLLGALLIGLIGLLDDLK--------GLSPKIRLLLQALAALLLILAGGGLSS-----------LGLLFGG-GLELGP   61 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCCHH-HHHHHH
T ss_conf             99999999999999998313--------698899999999999999999989850-----------6642013-777678


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             12222023578899859875211116657989999999999764147534666641014788346789988867788898
Q gi|254781100|r  180 LFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGF  259 (366)
Q Consensus       180 ~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgF  259 (366)
                      +++++++++++++.+||+|++||+|||+++++.+++.++..+++..++..               ...++.+++++++||
T Consensus        62 ~~~~~~~i~~i~~~~Na~N~iDGidGL~~~~~i~~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~l~F  126 (158)
T pfam00953        62 VLAILLTVFAIVGIINAVNFMDGLDGLAGGVALIAALALAILAYVNGDIE---------------LAILSLALLGALLGF  126 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHH---------------HHHHHHHHHHHHHHH
T ss_conf             99999999999999999898606774578999999999999999668678---------------999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             8855674100164610887999999999996
Q gi|254781100|r  260 LWFNISPAVIFMGDTGSLALGAFIGGIAVST  290 (366)
Q Consensus       260 L~fN~~PAkIFmGD~GS~~LG~~la~~ai~~  290 (366)
                      ++||+||||+||||+||+++|+.+|+.++..
T Consensus       127 l~~N~~~akiFlGD~GS~~lG~~ia~~~I~~  157 (158)
T pfam00953       127 LLFNFPPAKIFMGDSGSLFLGFVLAVLAILL  157 (158)
T ss_pred             HHHHCCCCCEEECCHHHHHHHHHHHHHHHHH
T ss_conf             9986573407525666799999999999994


No 14 
>KOG2788 consensus
Probab=99.78  E-value=9.3e-20  Score=127.57  Aligned_cols=191  Identities=19%  Similarity=0.307  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE-----CCCCCC
Q ss_conf             988778999999987446787531356603688999999999999998640277665566665337751-----211000
Q gi|254781100|r  101 IILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFP-----FFRDII  175 (366)
Q Consensus       101 ~~l~~~l~~~liG~iDD~~ki~~~~~~GLs~~~Kl~~Q~i~a~i~~~~l~~~~~~~~~~~~~~~~~~iP-----f~~~~~  175 (366)
                      ..+.+...+.++|+.||..+        ++||.|+....++++-..  +.++.+.+      .+...+|     +.+...
T Consensus       103 sallsi~~~ilLGfaDD~ld--------lrWRhKl~lPt~AtlPLL--mVYyv~~g------~TtV~iP~~~r~~l~~~~  166 (418)
T KOG2788         103 SALLSICSMILLGFADDVLD--------LRWRHKLLLPTIATLPLL--MVYYVSFG------VTTVVIPKPLRNILGLTS  166 (418)
T ss_pred             HHHHHHHHHHHHCCCCHHCC--------CHHHHHEECCCHHHCCEE--EEEEECCC------CEEEEECHHHHHHHCCCE
T ss_conf             99987768887504510022--------256542005313217458--99998378------628993678886511005


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHH---H-HHHHHH
Q ss_conf             000012222023578899859875211116657989999999999764147534666641014788346---7-899888
Q gi|254781100|r  176 LDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGE---L-VVVISA  251 (366)
Q Consensus       176 l~lg~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~~~~l~ii~~~~g~~~~~~~~~~~~~~~~~~---l-~i~~~~  251 (366)
                      +|+|.+|++......+..+|++|...|+|||..|++.+.+.....-....-.       ....-...++   . ..+...
T Consensus       167 ~nlg~lYy~yM~~lavFCtNsINIlAGiNGlEvGQslvia~~i~l~~l~~~~-------~~~~~~~~~~~h~fSlyl~~p  239 (418)
T KOG2788         167 LNLGFLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLVYLW-------RSVDPEATRFAHAFSLYLTIP  239 (418)
T ss_pred             ECCCCHHHHHHCEEEEECCCCHHHHCCCCHHEECCCHHHHHHHHHHHHHHHH-------CCCCCCCCCHHHHHHHHHHHH
T ss_conf             4330548864110256605730233055400203003344999853388873-------126830000256677887768


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             677888988855674100164610887999999999996245899999999999999999999
Q gi|254781100|r  252 LIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGGLFVVETLSVIMQV  314 (366)
Q Consensus       252 l~Ga~lgFL~fN~~PAkIFmGD~GS~~LG~~la~~ai~~~~~~~l~ii~~i~i~~~~sviiq~  314 (366)
                      +.+..+|-+.|||+|+|+|.||+=-|+-|.++|+++|+++-.-.+++-...-++.-+-.+=|-
T Consensus       240 ~~~~sl~ll~~n~yPsrVFVGDTfcyfaGMt~AVVgILGHFSKTllLFFiPQI~NFlyS~PQL  302 (418)
T KOG2788         240 LLATSLALLKYNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTLLLFFIPQILNFLYSLPQL  302 (418)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             888778887745687338864602230563664567754427999999999999999741887


No 15 
>pfam10555 MraY_sig1 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1. Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (mraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with probably ten transmembrane domains. This domain is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain.
Probab=93.00  E-value=0.015  Score=32.66  Aligned_cols=15  Identities=53%  Similarity=0.977  Sum_probs=12.2

Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             578851257787779
Q gi|254781100|r   69 KIDTPTMGGIIILMG   83 (366)
Q Consensus        69 K~~tP~~GGiai~~~   83 (366)
                      |++||||||+.++..
T Consensus         1 K~gTPTMGGv~iI~~   15 (26)
T pfam10555         1 KKGTPTMGGVLIIXX   15 (26)
T ss_pred             CCCCCCCCEEEEEEE
T ss_conf             988864263999984


No 16 
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=86.59  E-value=2  Score=20.85  Aligned_cols=87  Identities=29%  Similarity=0.402  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHC
Q ss_conf             766999999999999999999999988999999986220698538873110246578851--257787779999998753
Q gi|254781100|r   15 THVLKYVTFRSSAAFFSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPT--MGGIIILMGLIGSSLLWA   92 (366)
Q Consensus        15 ~~~f~~~~fr~~~a~l~sf~i~~~~~~~~I~~l~~~~~~~g~~~r~~~~~~H~~K~~tP~--~GGiai~~~~l~~~ll~~   92 (366)
                      .+..+--..++.+..+..|++++++....-+++|++...             ..|.+.++  .|.+..+++.+++.+...
T Consensus        34 ~~~~~n~~v~~ligai~~~li~~~~~~~~~~~~~~le~~-------------i~k~~~~~ilf~tiGLiiGLlia~l~~~  100 (356)
T COG4956          34 TAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKRLEEQ-------------IRKLPVTTILFGTIGLIIGLLIAVLLSS  100 (356)
T ss_pred             CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             112131879999999999999999999999999999999-------------9836899999987889999999999853


Q ss_pred             CCC---CHHH--HHHHHHHHHHHHHHH
Q ss_conf             567---8989--998877899999998
Q gi|254781100|r   93 DFS---SLHV--SIILLLTLSFGLVGF  114 (366)
Q Consensus        93 ~~~---~~~~--~~~l~~~l~~~liG~  114 (366)
                      ++.   .+..  ....+.++.++..|+
T Consensus       101 pL~~~~ip~~~~ii~vi~t~il~y~G~  127 (356)
T COG4956         101 PLFLLPIPFISTIIPVILTIILAYFGF  127 (356)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             776279607776899999999999736


No 17 
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=48.74  E-value=18  Score=15.66  Aligned_cols=13  Identities=31%  Similarity=0.457  Sum_probs=6.1

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             5674100164610
Q gi|254781100|r  263 NISPAVIFMGDTG  275 (366)
Q Consensus       263 N~~PAkIFmGD~G  275 (366)
                      |.+|.|.--|=.|
T Consensus       205 ~vSPnKTveGl~G  217 (303)
T COG4589         205 KVSPNKTVEGLIG  217 (303)
T ss_pred             CCCCCCHHHHHHH
T ss_conf             7698623788862


No 18 
>TIGR02838 spore_V_AC stage V sporulation protein AC; InterPro: IPR014203   This entry describes stage V sporulation protein AC; a paralog of stage V sporulation protein AE. Both are proteins found to be present in a species, if and only if, that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sporulation defect..
Probab=41.99  E-value=23  Score=15.06  Aligned_cols=46  Identities=30%  Similarity=0.567  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHH--HCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2577877799999987--53567-----8989998877899999998744678
Q gi|254781100|r   75 MGGIIILMGLIGSSLL--WADFS-----SLHVSIILLLTLSFGLVGFYDDYIK  120 (366)
Q Consensus        75 ~GGiai~~~~l~~~ll--~~~~~-----~~~~~~~l~~~l~~~liG~iDD~~k  120 (366)
                      +||+.-.++=++..+.  +.+++     ++....+++.+.++.-+|..||+-+
T Consensus        26 ~GGLIC~iGq~~~~fy~~~f~~se~~a~~~t~~tlIfl~alLTG~G~YDkia~   78 (141)
T TIGR02838        26 VGGLICLIGQLISDFYLRYFQFSEKTAGSPTVATLIFLSALLTGLGVYDKIAQ   78 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             77599989999999998553534765037289999999999715654766775


No 19 
>KOG2844 consensus
Probab=41.44  E-value=13  Score=16.40  Aligned_cols=16  Identities=31%  Similarity=0.600  Sum_probs=13.7

Q ss_pred             CCCCCCHHHHHHHHCC
Q ss_conf             7666781228999679
Q gi|254781100|r  323 RVFLMAPIHHHFEKKG  338 (366)
Q Consensus       323 r~f~~~plHH~l~~~G  338 (366)
                      |.++|+|+||+++.+|
T Consensus       450 RnlR~sply~~L~~aG  465 (856)
T KOG2844         450 RNLRMSPLYDRLESAG  465 (856)
T ss_pred             CCCCCCCCHHHHHHCC
T ss_conf             0123470289898526


No 20 
>PRK09699 D-allose transporter subunit; Provisional
Probab=38.53  E-value=26  Score=14.75  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=7.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q ss_conf             79885158987789999999
Q gi|254781100|r  337 KGWTENQIVIRFWIISFIFA  356 (366)
Q Consensus       337 ~G~s~~~iv~~~~~i~~~~~  356 (366)
                      .|.+.+++.+.-|.++..++
T Consensus       215 sGI~v~r~~i~~y~lsG~~a  234 (325)
T PRK09699        215 SGIDVKFHILVVFIISGVCA  234 (325)
T ss_pred             HCCCCHHEEEEHHHHHHHHH
T ss_conf             48871340443389878999


No 21 
>pfam06830 Root_cap Root cap. The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die.This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.
Probab=35.45  E-value=16  Score=15.89  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=18.5

Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             20698538873110246578851257787
Q gi|254781100|r   52 EFRGQPVRVPNLPIHARKIDTPTMGGIII   80 (366)
Q Consensus        52 ~~~g~~~r~~~~~~H~~K~~tP~~GGiai   80 (366)
                      .-.||.-|||-...-+....-|.|||--=
T Consensus        13 GVLGqTYr~dyvn~~k~g~~MPvmGG~~~   41 (57)
T pfam06830        13 GVLGQTYRPDYVNPVKVGVAMPVMGGEDK   41 (57)
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             22144106674254336762330148764


No 22 
>pfam11821 DUF3341 Protein of unknown function (DUF3341). This family of proteins are functionally uncharacterized. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=34.02  E-value=30  Score=14.33  Aligned_cols=61  Identities=31%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11116657989999999999764-147534666641014788346789988867788898885567
Q gi|254781100|r  201 DGLDGLAIVPVMIASVAFSFIAY-VAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNIS  265 (366)
Q Consensus       201 DGlDGLa~g~~~i~~~~l~ii~~-~~g~~~~~~~~~~~~~~~~~~l~i~~~~l~Ga~lgFL~fN~~  265 (366)
                      -|+=|.++|..+.......-.-. +.|....+   ..+++|..-|+.++++++ +.++|+++.|.=
T Consensus        59 gGl~G~~~g~~l~~~~~~~dyPl~iGGKP~~s---~pafipI~FEltiL~aa~-~~v~g~l~~~~L  120 (173)
T pfam11821        59 GGLTGAATAFLLQYYTSAIDWPLNIGGKPLFS---WPAFIPITFELTVLFAAL-GMVIGFLALSGL  120 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC---CCCCHHHHHHHHHHHHHH-HHHHHHHHHCCC
T ss_conf             88999999999999999852650148977776---766227999999999999-999999998499


No 23 
>KOG4112 consensus
Probab=31.50  E-value=34  Score=14.09  Aligned_cols=30  Identities=10%  Similarity=-0.048  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999999988999999986220698538
Q gi|254781100|r   30 FSAMLIVFAFGPKVIDCLRSLQEFRGQPVR   59 (366)
Q Consensus        30 l~sf~i~~~~~~~~I~~l~~~~~~~g~~~r   59 (366)
                      ..+|.++.+++-.--|+.||...+..++..
T Consensus        57 g~~~v~t~li~LPpwP~y~rn~LkW~~Pa~   86 (101)
T KOG4112          57 GAGFVFTLLITLPPWPWYRRNPLKWAQPAI   86 (101)
T ss_pred             HHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
T ss_conf             888998887507895656238643468765


No 24 
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=30.77  E-value=35  Score=14.02  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             11166579899999999997
Q gi|254781100|r  202 GLDGLAIVPVMIASVAFSFI  221 (366)
Q Consensus       202 GlDGLa~g~~~i~~~~l~ii  221 (366)
                      -.|||..+-.++...+++.+
T Consensus       177 l~~GL~vaGgmlpavGfAml  196 (265)
T COG3715         177 LTNGLAVAGGMLPAVGFAML  196 (265)
T ss_pred             HHHHHHHHCCHHHHHHHHHH
T ss_conf             86256674051689899999


No 25 
>PRK03839 putative kinase; Provisional
Probab=23.01  E-value=42  Score=13.58  Aligned_cols=16  Identities=19%  Similarity=0.578  Sum_probs=7.4

Q ss_pred             HHHHHHHCCCCCCHHH
Q ss_conf             2289996798851589
Q gi|254781100|r  330 IHHHFEKKGWTENQIV  345 (366)
Q Consensus       330 lHH~l~~~G~s~~~iv  345 (366)
                      +-.||+.+|||++|+.
T Consensus        93 L~~RL~~RgYs~~KI~  108 (180)
T PRK03839         93 IAERLKERGYSKKKIG  108 (180)
T ss_pred             HHHHHHHCCCCHHHHH
T ss_conf             9999997699989999


No 26 
>TIGR01920 Shik_kin_archae shikimate kinase; InterPro: IPR010189   Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the shikimate pathway of aromatic amino acids biosynthesis. It converts shikimate to shikimate 3-phosphate (3-phosphoshikimate). This part of the pathway leads to the biosynthesis of chorismate, the precursor of aromatic amino acids, folates, ubiquinones, and other aromatic compounds. The shikimate pathway links metabolism of carbohydrates to biosynthesis of the aromatic amino acids phenylalanine, tyrosine, tryptophan and their derivatives in microorganisms and plants . In a sequence of seven enzymatic reactions, D-erythrose 4-phosphate (E4P), an intermediate of the pentose phosphate pathway and phosphoenol pyruvate (PEP), a glycolytic intermediate, are converted to chorismate. The shikimate pathway is present in bacteria, archaea, fungi and plants. The absence of the shikimate pathway in animals makes it an attractive target for non-toxic herbicides, antimicrobial and antifungal agents.   Shikimate kinase enzymes present an example of convergent evolution via enzyme recruitment from an unrelated group. This group represents shikimate kinases of the archaeal type. Members have no sequence similarity with the typical form of shikimate kinase (PIRSF000702 from PIRSF, IPR000623 from INTERPRO) found in bacteria and eukaryotes, but are instead distantly related to homoserine kinases, which belong to the GHMP kinase domain superfamily (GHMP = galactose, homoserine, mevalonate, and phosphomevalonate) . All known non-archaeal shikimate kinases (the typical form) belong to the non-homologous, structurally unrelated nucleoside monophosphate (NMP) kinase domain superfamily .   Nomenclature note: the name AroK is used for non-homologous shikimate kinases of both the archaeal and bacterial types. ; GO: 0004765 shikimate kinase activity, 0009073 aromatic amino acid family biosynthetic process, 0005737 cytoplasm.
Probab=22.33  E-value=50  Score=13.14  Aligned_cols=52  Identities=19%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             CCCCCCCCHHHH----HHHHHHHHHHHHHCC--CCCHHHHHH-HHHHH----HHHHHHHHHHH
Q ss_conf             465788512577----877799999987535--678989998-87789----99999987446
Q gi|254781100|r   67 ARKIDTPTMGGI----IILMGLIGSSLLWAD--FSSLHVSII-LLLTL----SFGLVGFYDDY  118 (366)
Q Consensus        67 ~~K~~tP~~GGi----ai~~~~l~~~ll~~~--~~~~~~~~~-l~~~l----~~~liG~iDD~  118 (366)
                      .-|+..|...|+    |...+++.+++-...  ...+..... +..-+    .+...|.+||-
T Consensus        75 ~~~seiP~g~GLKSSSA~~nAlv~A~~~~~gva~~~~~~~~~~l~a~~S~~AG~s~TGAfDDa  137 (273)
T TIGR01920        75 EVESEIPLGSGLKSSSALVNALVLAVLKAKGVAEEIDDIDILRLGAELSKEAGVSVTGAFDDA  137 (273)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEHHHHH
T ss_conf             996176788664378999999999999861234217733689999998886685153058899


No 27 
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=21.94  E-value=51  Score=13.09  Aligned_cols=54  Identities=9%  Similarity=0.029  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999998899999998622069853887311024657885125778777999999
Q gi|254781100|r   29 FFSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIIILMGLIGSS   88 (366)
Q Consensus        29 ~l~sf~i~~~~~~~~I~~l~~~~~~~g~~~r~~~~~~H~~K~~tP~~GGiai~~~~l~~~   88 (366)
                      ..+++++-.++.|.+..+.-|+    -...||.+|-...  ..++-.|+.....++.++.
T Consensus        58 a~~al~~K~iliP~lL~r~~~k----l~~~re~ep~i~~--~~s~l~~~~lv~ls~~~~~  111 (213)
T PRK11492         58 SISAFITKVLLVPLIMTYAARK----LPVNIEEKAVFGP--AVSALLAALIVLLCAFVVQ  111 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----CCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999998----3985112473681--7999999999999999985


Done!