Query gi|254781100|ref|YP_003065513.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 366 No_of_seqs 212 out of 2824 Neff 7.0 Searched_HMMs 23785 Date Wed Jun 1 02:00:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781100.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3few_X Colicin S4; cell lysis, 35.7 17 0.00073 14.5 2.7 10 324-333 494-503 (505) 2 3g63_A Pfluding; subatomic res 16.4 31 0.0013 13.1 0.5 14 320-333 367-380 (381) 3 3eml_A Human adenosine A2A rec 15.6 44 0.0018 12.3 6.3 14 320-333 471-484 (488) 4 2j8s_A ACRB, acriflavine resis 12.7 53 0.0022 11.8 6.6 31 16-46 465-495 (1055) 5 2v50_A Multidrug resistance pr 9.9 67 0.0028 11.3 4.5 32 16-47 465-496 (1052) 6 3ghy_A Ketopantoate reductase 8.2 79 0.0033 10.9 2.2 29 302-333 307-335 (335) 7 2i68_A Protein EMRE; transmemb 6.8 92 0.0038 10.5 6.8 36 179-214 3-38 (137) 8 2qjy_B Cytochrome C1; cytochro 6.8 92 0.0039 10.5 4.2 30 303-332 238-268 (269) 9 2o1m_A Probable amino-acid ABC 6.7 93 0.0039 10.5 1.8 22 312-333 233-257 (258) 10 1pj5_A N,N-dimethylglycine oxi 6.5 95 0.004 10.4 1.8 16 323-338 428-443 (830) No 1 >3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} Probab=35.72 E-value=17 Score=14.49 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=4.1 Q ss_pred CCCCCHHHHH Q ss_conf 6667812289 Q gi|254781100|r 324 VFLMAPIHHH 333 (366) Q Consensus 324 ~f~~~plHH~ 333 (366) +-+.+|-||| T Consensus 494 ~~~~~~~~~~ 503 (505) T 3few_X 494 IIKPAHHHHH 503 (505) T ss_dssp TSCCCC---- T ss_pred HCCCCCCCCC T ss_conf 6243001335 No 2 >3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein, hydrogen ATOM, phosphate binding protein; 0.88A {Pseudomonas fluorescens SBW25} PDB: 3g62_A 2q9t_A 2v3q_A 2cap_A Probab=16.39 E-value=31 Score=13.12 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=10.1 Q ss_pred CCCCCCCCCHHHHH Q ss_conf 08876667812289 Q gi|254781100|r 320 TKKRVFLMAPIHHH 333 (366) Q Consensus 320 ~~kr~f~~~plHH~ 333 (366) .||.+++.+|-||| T Consensus 367 ~g~~~~~~~~~~~~ 380 (381) T 3g63_A 367 IGRPLLEAAHHHHH 380 (381) T ss_dssp CSBCCC-------- T ss_pred CCCCHHHHHCCCCC T ss_conf 88305543113357 No 3 >3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} Probab=15.55 E-value=44 Score=12.26 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=7.9 Q ss_pred CCCCCCCCCHHHHH Q ss_conf 08876667812289 Q gi|254781100|r 320 TKKRVFLMAPIHHH 333 (366) Q Consensus 320 ~~kr~f~~~plHH~ 333 (366) ++|+|||..|-||| T Consensus 471 rr~~p~~~~~~~~~ 484 (488) T 3eml_A 471 RQQEPFKAHHHHHH 484 (488) T ss_dssp CC------------ T ss_pred CCCCCCCCCCCCCC T ss_conf 78999764433423 No 4 >2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... Probab=12.68 E-value=53 Score=11.79 Aligned_cols=31 Identities=10% Similarity=0.246 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6699999999999999999999998899999 Q gi|254781100|r 16 HVLKYVTFRSSAAFFSAMLIVFAFGPKVIDC 46 (366) Q Consensus 16 ~~f~~~~fr~~~a~l~sf~i~~~~~~~~I~~ 46 (366) ..|+.+.+-...+.+.|++.++.+.|..-.+ T Consensus 465 ~~~~~~~~~v~~aL~~Sl~val~ilP~l~~~ 495 (1055) T 2j8s_A 465 AIYRQFSITIVSAMALSVLVALILTPALCAT 495 (1055) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHTT T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3221304899999999999988658999999 No 5 >2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Probab=9.88 E-value=67 Score=11.25 Aligned_cols=32 Identities=6% Similarity=0.242 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 66999999999999999999999988999999 Q gi|254781100|r 16 HVLKYVTFRSSAAFFSAMLIVFAFGPKVIDCL 47 (366) Q Consensus 16 ~~f~~~~fr~~~a~l~sf~i~~~~~~~~I~~l 47 (366) ..|+.+.+-...+.+.|+++++.+.|....++ T Consensus 465 ~~~~~~~~~~~~~l~~s~~~~~~~~p~l~~~~ 496 (1052) T 2v50_A 465 VIYRQFSITIVSAMALSVIVALILTPALCATM 496 (1052) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 41565302588888999999999999999996 No 6 >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia solanacearum MOLK2} Probab=8.17 E-value=79 Score=10.86 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 99999999999999998608876667812289 Q gi|254781100|r 302 LFVVETLSVIMQVGYFKMTKKRVFLMAPIHHH 333 (366) Q Consensus 302 i~i~~~~sviiq~~~~k~~~kr~f~~~plHH~ 333 (366) .|..|++..+++.. -+.|.+|+-.|-||| T Consensus 307 ~P~~~~l~~lik~~---~~~~g~~~~~~~~~~ 335 (335) T 3ghy_A 307 TPQIDTLLGLVRLH---AQTRGLYEGHHHHHH 335 (335) T ss_dssp CHHHHHHHHHHHHH---HHHTTCC-------- T ss_pred CHHHHHHHHHHHHH---HHHCCCCCCCCCCCC T ss_conf 23999999999999---997399788777789 No 7 >2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Probab=6.83 E-value=92 Score=10.49 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=18.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 012222023578899859875211116657989999 Q gi|254781100|r 179 GLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIA 214 (366) Q Consensus 179 g~l~i~~~~~~ivg~~NavNl~DGlDGLa~g~~~i~ 214 (366) +|++...++..=+..+.+.+..||..-+......++ T Consensus 3 ~wl~L~~Ai~~EV~gt~~LK~s~gft~~~p~i~~i~ 38 (137) T 2i68_A 3 PYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTII 38 (137) T ss_dssp -CHHHHHHHHHHHHHHHHC------------CHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 789999999999999999998718874889999999 No 8 >2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B* Probab=6.78 E-value=92 Score=10.48 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHH-HHHHHCCCCCCCCCHHHH Q ss_conf 999999999999-999860887666781228 Q gi|254781100|r 303 FVVETLSVIMQV-GYFKMTKKRVFLMAPIHH 332 (366) Q Consensus 303 ~i~~~~sviiq~-~~~k~~~kr~f~~~plHH 332 (366) .++-.++..+.| .|..+.+||+--..|-|| T Consensus 238 ~vl~~l~y~lkr~~WkdIK~~~~~~~~~~~~ 268 (269) T 2qjy_B 238 TVLSVLLYLTNKRLWAGVKGKKKTNVHHHHH 268 (269) T ss_dssp HHHHHHHHHHHHHHHHTTC------------ T ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCCCCC T ss_conf 9999999999999857602240001101356 No 9 >2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Probab=6.69 E-value=93 Score=10.45 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=0.0 Q ss_pred HHHHHHHHCCCCCCC---CCHHHHH Q ss_conf 999999860887666---7812289 Q gi|254781100|r 312 MQVGYFKMTKKRVFL---MAPIHHH 333 (366) Q Consensus 312 iq~~~~k~~~kr~f~---~~plHH~ 333 (366) +++++.|+.|+.+-| +.|-||| T Consensus 233 ~~~I~~Kw~g~d~~~~~~~~~~~~~ 257 (258) T 2o1m_A 233 LKRLSLKWLGDDYSKEQYLEHHHHH 257 (258) T ss_dssp HHHHHHHHTCTTC------------ T ss_pred HHHHHHHHCCCCCCHHHHHCCCCCC T ss_conf 9999998779988821301011347 No 10 >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Probab=6.51 E-value=95 Score=10.40 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=0.0 Q ss_pred CCCCCCHHHHHHHHCC Q ss_conf 7666781228999679 Q gi|254781100|r 323 RVFLMAPIHHHFEKKG 338 (366) Q Consensus 323 r~f~~~plHH~l~~~G 338 (366) |+.|++|+|.++...| T Consensus 428 r~~r~spl~~~~~~~g 443 (830) T 1pj5_A 428 RNLRVSPFHARHKELG 443 (830) T ss_dssp CCSBCCTTHHHHHHTT T ss_pred CCCCCCCHHHHHHHCC T ss_conf 8864460469999719 Done!