RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781100|ref|YP_003065513.1|
phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus
Liberibacter asiaticus str. psy62]
(366 letters)
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 335 bits (862), Expect = 1e-92
Identities = 153/297 (51%), Positives = 210/297 (70%), Gaps = 21/297 (7%)
Query: 66 HARKIDTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGD 125
H +K TPTMGGI+ ++ ++ S+LLWAD S V ++LLLTL FGL+GF DDY+K+
Sbjct: 5 HLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKR 64
Query: 126 AGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPF 185
GLS + ++L++F+IAI+ L +++ S T I PFF++ ++D+G+ +IPF
Sbjct: 65 NLGLSARQKLLLQFLIAIVFALLLYYFNGSG-------TLITLPFFKNGLIDLGILYIPF 117
Query: 186 AAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGEL 245
A FVIV ++NAVNLTDGLDGLA +I ++A + IAY+AGN + L
Sbjct: 118 AIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAIIAYLAGNAVF--------------L 163
Query: 246 VVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGGLFVV 305
V +AL+GA +GFLWFN PA +FMGDTGSLALG + +A+ TK E+LL+IIGG+FV+
Sbjct: 164 AVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGGVFVI 223
Query: 306 ETLSVIMQVGYFKMTKKRVFLMAPIHHHFEKKGWTENQIVIRFWIISFIFAVIGLLT 362
E LSVI+QVG FK+T KR+F MAP+HHHFE KGW+E ++V+RFWIIS I A+IGLL
Sbjct: 224 EALSVILQVGSFKLTGKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLLL 280
>gnl|CDD|30820 COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane].
Length = 319
Score = 175 bits (445), Expect = 2e-44
Identities = 150/346 (43%), Positives = 195/346 (56%), Gaps = 42/346 (12%)
Query: 27 AAFFSAMLIVFAFGPKVIDCLRSLQEFRGQPVRVPNLPIHARKIDTPTMGGIIILMGLIG 86
AA + +I P +I LR L P P + K TPTMGG+ IL+ ++
Sbjct: 7 AALIISFVISLILTPILIKFLRKLG-LGDIPEDGP----KSHKKGTPTMGGLAILLSILL 61
Query: 87 SSLLWAD-FSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAILA 145
+SLL A+ ++ +V ++LL L FGL+GF DD +K+ S K+R LI+ + A+L
Sbjct: 62 ASLLAANLLTNPYVWLVLLGLLGFGLIGFLDDRLKL--------SPKIRGLIQKLKALLL 113
Query: 146 VCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDG 205
+ AL L + PFF L L FI FA F IV +NAVNLTDGLDG
Sbjct: 114 IIALGELPIKFLDIP-----LGIPFF---KLPGPLLFILFAVFAIVGASNAVNLTDGLDG 165
Query: 206 LAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNIS 265
LA IA +A + IA + G GEL ++ +AL GA +GFLWFN
Sbjct: 166 LAAGLSAIALLALALIALLQGL---------------GELALICAALAGACLGFLWFNFY 210
Query: 266 PAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGGL--FVVETLSVIMQVGYFKMTKKR 323
PA IFMGDTGSLALGA + IA+ K EILL IIG L V+ETLSVI++ FK+ R
Sbjct: 211 PAKIFMGDTGSLALGAALAAIALLLKQEILLAIIGPLGVPVIETLSVILRRLSFKLKPIR 270
Query: 324 VFLMAPIHHHFEKKG---WTENQIVIRFWIISFIFAVIGLLTLKMR 366
+ MA +HHH E KG W+E Q+V+RFW+IS I A+I LL LK R
Sbjct: 271 LPDMAHLHHHLELKGLSEWSERQVVLRFWLISLILALIALLLLKSR 316
>gnl|CDD|133463 cd06853, GT_WecA_like, This subfamily contains Escherichia coli
WecA, Bacillus subtilis TagO and related proteins. WecA
is an UDP-N-acetylglucosamine
(GlcNAc):undecaprenyl-phosphate (Und-P)
GlcNAc-1-phosphate transferase that catalyzes the
formation of a phosphodiester bond between a
membrane-associated undecaprenyl-phosphate molecule and
N-acetylglucosamine 1-phosphate, which is usually
donated by a soluble UDP-N-acetylglucosamine precursor.
WecA participates in the biosynthesis of O antigen LPS
in many enteric bacteria and is also involved in the
biosynthesis of enterobacterial common antigen. A
conserved short sequence motif and a conserved arginine
at a cytosolic loop of this integral membrane protein
were shown to be critical in recognition of substrate
UDP-N-acetylglucosamine.
Length = 249
Score = 105 bits (264), Expect = 2e-23
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 38/224 (16%)
Query: 69 KIDTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLS---FGLVGFYDDYIKITTGD 125
K P +GG+ I +G + + LL F + +L L L+G DD
Sbjct: 5 KGPIPRLGGLAIFLGFLLALLLALLFPFFLLPELLGLLAGATIIVLLGLLDDLF------ 58
Query: 126 AGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPF 185
LS KV++L + + A++ V + I+ +G IP
Sbjct: 59 --DLSPKVKLLGQILAALIVVFGGGVILSLLGPFG------------GGIILLGWLSIPL 104
Query: 186 AAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGEL 245
IV NA+NL DGLDGLA +IAS+A + +A + G +L+
Sbjct: 105 TVLWIVGIINAINLIDGLDGLAGGVALIASLALAILALLNGQVLV--------------- 149
Query: 246 VVVISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVS 289
++ AL GA +GFL +N PA IFMGD GSL LG + +++
Sbjct: 150 ALLALALAGALLGFLPYNFHPARIFMGDAGSLFLGFLLAVLSIL 193
>gnl|CDD|133460 cd06499, GT_MraY-like, Glycosyltransferase 4 (GT4) includes both
eukaryotic and prokaryotic
UDP-D-N-acetylhexosamine:polyprenol phosphate
D-N-acetylhexosamine-1-phosphate transferases. They
catalyze the transfer of a D-N-acetylhexosamine
1-phosphate to a membrane-bound polyprenol phosphate,
which is the initiation step of protein N-glycosylation
in eukaryotes and peptidoglycan biosynthesis in
bacteria. One member, D-N-acetylhexosamine 1-phosphate
transferase (GPT) is a eukaryotic enzyme, which is
specific for UDP-GlcNAc as donor substrate and
dolichol-phosphate as the membrane bound acceptor. The
bacterial members MraY, WecA, and WbpL/WbcO utilize
undecaprenol phosphate as the acceptor substrate, but
use different UDP-sugar donor substrates. MraY-type
transferases are highly specific for
UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins
are selective for UDP-N-acetylglucosamine (UDP-GlcNAc).
The WbcO/WbpL substrate specificity has not yet been
determined, but the structure of their biosynthetic
endproducts implies that UDP-N-acetyl-D-fucosamine
(UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine
(UDP-QuiNAc) are used. The eukaryotic reaction is the
first step in the assembly of dolichol-linked
oligosaccharide intermediates and is essential for
N-glycosylation. The prokaryotic reactions lead to the
formation of polyprenol-linked oligosaccharides involved
in bacterial cell wall and peptidoglycan assembly.
Archaeal and eukaryotic enzymes may use the same
substrates and are evolutionarily closer than the
bacterial enzyme. Archaea possess the same
N-glycosylation pathway as eukaryotes. A glycosyl
transferase gene Mv1751 in M. voltae encodes for the
enzyme that carries out the first step in the pathway,
the attachment of GlcNAc to a dolichol lipid carrier in
the membrane. A lethal mutation in the alg7 (GPT) gene
in Saccharomyces cerevisiae was successfully
complemented with Mv1751, the archaea gene.
Length = 185
Score = 104 bits (262), Expect = 3e-23
Identities = 77/216 (35%), Positives = 110/216 (50%), Gaps = 32/216 (14%)
Query: 72 TPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGGLSG 131
TPTMGG+ IL+G + LL+ S+ + + LL L G+VGF DD + + LS
Sbjct: 2 TPTMGGLAILLGFLLGVLLYIPHSNTLILLALLSGLVAGIVGFIDDLLGLKVE----LSE 57
Query: 132 KVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIV 191
+ ++L++ + A+ LL T + +LD+G+F+IPFA IV
Sbjct: 58 REKLLLQILAALFL---LLIGGGHTTVTTPL----------GFVLDLGIFYIPFAIIAIV 104
Query: 192 ATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISA 251
NAVNL DG+DGLA +IAS+A + A ++G ++
Sbjct: 105 GATNAVNLIDGMDGLAAGISVIASIACALFALLSGQ---------------TTSALLFII 149
Query: 252 LIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIA 287
L GA +GFL+FN PA IFMGDTGS LGA +A
Sbjct: 150 LAGACLGFLYFNFYPAKIFMGDTGSYFLGAAYAAVA 185
>gnl|CDD|144520 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.
Length = 158
Score = 98.0 bits (245), Expect = 3e-21
Identities = 68/192 (35%), Positives = 95/192 (49%), Gaps = 35/192 (18%)
Query: 99 VSIILLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLL 158
+ +LL L GL+G DD GLS K+R+L++ + A+L + A S+ LL
Sbjct: 1 LLGLLLGALLIGLIGLLDDLK--------GLSPKIRLLLQALAALLLILAGGGLSSLGLL 52
Query: 159 GIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAF 218
F + + I F IV NAVN DGLDGLA +IA++A
Sbjct: 53 ------------FGGGLELGPVLAILLTVFAIVGIINAVNFMDGLDGLAGGVALIAALAL 100
Query: 219 SFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDTGSLA 278
+ +AYV G+I EL ++ AL+GA +GFL FN PA IFMGD+GSL
Sbjct: 101 AILAYVNGDI---------------ELAILSLALLGALLGFLLFNFPPAKIFMGDSGSLF 145
Query: 279 LGAFIGGIAVST 290
LG + +A+
Sbjct: 146 LGFVLAVLAILL 157
>gnl|CDD|133464 cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze
the formation of a phosphodiester bond between a
membrane-associated undecaprenyl-phosphate (Und-P)
molecule and N-acetylhexosamine 1-phosphate, which is
usually donated by a soluble UDP-N-acetylhexosamine
precursor. The WbcO/WbpL substrate specificity has not
yet been determined, but the structure of their
biosynthetic end products implies that
UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or
UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The
subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P
transferases includes the WbcO protein from Yersinia
enterocolitica and the WbpL protein from Pseudomonas
aeruginosa. These transferases initiate LPS O-antigen
biosynthesis. Similar to other GlcNAc/MurNAc-1-P
transferase family members, WbpL is a highly hydrophobic
protein possessing 11 predicted transmembrane segments.
Length = 253
Score = 94.6 bits (236), Expect = 4e-20
Identities = 62/220 (28%), Positives = 88/220 (40%), Gaps = 43/220 (19%)
Query: 72 TPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLS---FGLVGFYDDYIKITTGDAGG 128
TP GGI ++ + + LL A L+ LLL + VGF DD
Sbjct: 15 TPRGGGIAFVLAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLR--------S 66
Query: 129 LSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAF 188
LS K+R+L++ + A LA+ AL +
Sbjct: 67 LSPKIRLLVQLLAAALALYALGP-----------------LTSLLLNFLPPWLIALLLLL 109
Query: 189 VIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVV 248
IV N N DG+DGLA ++ +A + + Y+AG L ++
Sbjct: 110 AIVWIINLYNFMDGIDGLAGGEALVVFLALALLGYLAGEP---------------ALALL 154
Query: 249 ISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAV 288
AL GA +GFL FN PA IFMGD GS LG + + +
Sbjct: 155 ALALAGALLGFLPFNWPPAKIFMGDVGSTFLGFLLAALLL 194
>gnl|CDD|133466 cd06856, GT_GPT_archaea, UDP-GlcNAc:dolichol-P GlcNAc-1-P
transferase (GPT)-like proteins in archaea. Eukaryotic
GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc
to dolichol-P to form GlcNAc-P-P-dolichol. The reaction
is the first step in the assembly of dolichol-linked
oligosaccharide intermediates and is essential for
eukaryotic N-linked glycosylation. Evidence for the
existence of the N-glycosylation pathway in archaea has
emerged and genes responsible for the pathway have been
identified. A glycosyl transferase gene Mv1751 in M.
voltae encodes for the enzyme that carries out the first
step in the pathway, the attachment of GlcNAc to a
dolichol lipid carrier in the membrane. A lethal
mutation in the alg7 (GPT) gene in Saccharomyces
cerevisiae was successfully complemented with Mv1751,
the archaea gene, indicating that eukaryotic and
archaeal enzymes may use the same substrates and are
evolutionarily closer than the bacterial enzyme, which
uses a different substrate.
Length = 280
Score = 91.9 bits (229), Expect = 2e-19
Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 56/309 (18%)
Query: 69 KIDTPTMGGIIILMG-LIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAG 127
K + P MGGI +L+G +G L A S+ +L+ +L GL+G DD +
Sbjct: 10 KPEVPEMGGIAVLLGFSLGLLFLSALTHSVEALALLITSLLAGLIGLLDDIL-------- 61
Query: 128 GLSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAA 187
GLS ++L+ + AI + +L N + L+++
Sbjct: 62 GLSQSEKVLLTALPAIPLL--VLKAGNPLTS-----------LPIGGRVLGILYYLLIVP 108
Query: 188 FVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVV 247
I +NA N+ G +GL +I +A + I + G+ +
Sbjct: 109 LGITGASNAFNMLAGFNGLEAGMGIIILLALAIILLINGDYDALIIALI----------- 157
Query: 248 VISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKHEILLIIIGGLFVVET 307
L+ A + FL +N PA +F GD G+L +GA IG IAV EI+L+I+ +V++
Sbjct: 158 ----LVAALLAFLLYNKYPAKVFPGDVGTLPIGALIGTIAVLGGLEIILLILLLPYVIDF 213
Query: 308 LSVIMQVGYFKMTKKRVF---------------LMAPIHHHF-EKKGW-TENQIVIRFWI 350
L + + R + + +KG TE ++V+ W
Sbjct: 214 LLKL--RSKGGGKEHREKPTKVLEDGTLYPPPDKSSLLTLRLLLRKGPMTEKEVVLVLWA 271
Query: 351 ISFIFAVIG 359
+ + ++
Sbjct: 272 LEALLGILA 280
>gnl|CDD|133467 cd06912, GT_MraY_like, This subfamily is composed of
uncharacterized bacterial glycosyltransferases in the
MraY-like family. This family contains both eukaryotic
and prokaryotic UDP-D-N-acetylhexosamine:polyprenol
phosphate D-N-acetylhexosamine-1-phosphate transferases,
which catalyze the transfer of a D-N-acetylhexosamine
1-phosphate to a membrane-bound polyprenol phosphate.
This is the initiation step of protein N-glycosylation
in eukaryotes and peptidoglycan biosynthesis in
bacteria. The three bacterial members MraY, WecA, and
WbpL/WbcO, utilize undecaprenol phosphate as the
acceptor substrate, but use different UDP-sugar donor
substrates. MraY-type transferases are highly specific
for UDP-N-acetylmuramate-pentapeptide, whereas WecA
proteins are selective for UDP-N-acetylglucosamine
(UDP-GlcNAc). The WbcO/WbpL substrate specificity has
not yet been determined, but the structure of their
biosynthetic end products implies that
UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or
UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The
prokaryotic enzyme-catalyzed reactions lead to the
formation of polyprenol-linked oligosaccharides involved
in bacterial cell wall and peptidoglycan assembly.
Length = 193
Score = 78.1 bits (193), Expect = 4e-15
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 33/219 (15%)
Query: 69 KIDTPTMGGIIILMGLIGSSLLWADFSSLHVSIILLLTLSFGLVGFYDDYIKITTGDAGG 128
TP +GG+ I +GL+ LL + S + ++LL L L G +D K
Sbjct: 8 TRPTPRIGGVAIFLGLLAGLLLLSLLSGSLLLLLLLAALPAFLAGLLEDITKR------- 60
Query: 129 LSGKVRILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAF 188
+S ++R+L F+ A+LAV L L D++L F I F F
Sbjct: 61 VSPRIRLLATFLSALLAVWLLGASITRLDLP-----------GLDLLLSFPPFAIIFTIF 109
Query: 189 VIVATANAVNLTDGLDGLAIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVV 248
+ ANA N+ DG +GLA +I+ ++ + +A F G +L +
Sbjct: 110 AVAGVANAFNIIDGFNGLASGVAIISLLSLALVA---------------FQVGDTDLAFL 154
Query: 249 ISALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIA 287
L GA +GFL FN IF+GD G+ LG + +A
Sbjct: 155 ALLLAGALLGFLIFNFPFGKIFLGDGGAYLLGFLLAWLA 193
>gnl|CDD|133461 cd06851, GT_GPT_like, This family includes eukaryotic
UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and
archaeal GPT-like glycosyltransferases. Eukaryotic GPT
catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to
dolichol-P to form GlcNAc-P-P-dolichol. The reaction is
the first step in the assembly of dolichol-linked
oligosaccharide intermediates and is essential for
eukaryotic N-linked glycosylation. GPT activity has been
identified in all eukaryotic cells examined to date.
Evidence for the existence of the N-glycosylation
pathway in archaea has emerged and genes responsible for
the pathway have been identified. A glycosyl transferase
gene Mv1751 in M. voltae encodes for the enzyme that
carries out the first step in the pathway, the
attachment of GlcNAc to a dolichol lipid carrier in the
membrane. A lethal mutation in the alg7 (GPT) gene in
Saccharomyces cerevisiae was successfully complemented
with Mv1751, the archaeal gene, indicating eukaryotic
and archaeal enzymes may use the same substrates and are
evolutionarily closer than the bacterial enzyme, which
uses a different substrate.
Length = 223
Score = 40.6 bits (95), Expect = 7e-04
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 148 ALLFYSNSTLLGIETKTSIVFP-FFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGL 206
AL F + LL +++ FP F + + ++ F+IV T NA N GL+G+
Sbjct: 78 ALAFAAAPILLLGAYDSNLDFPLFGGS--VKIPSLYLVLVVFMIVITGNAFNSIAGLNGV 135
Query: 207 AIVPVMIASVAFSFIAYVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISP 266
I S A + V E+ + L A + FL++N P
Sbjct: 136 EAGFTTIISFALAI---------------SLLVQQNYEIGIACLCLAFASLAFLYYNKYP 180
Query: 267 AVIFMGDTGSLALGAFIGGIAV 288
+ IF GDTG+ GA +A+
Sbjct: 181 SRIFPGDTGAYMFGATYAVVAI 202
>gnl|CDD|37999 KOG2788, KOG2788, KOG2788, Glycosyltransferase [Carbohydrate
transport and metabolism].
Length = 418
Score = 33.8 bits (77), Expect = 0.078
Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 165 SIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVP--VMIASVAFSFIA 222
+ L++G + + + V N++N+ G++GL + V+ AS+ + +
Sbjct: 156 KPLRNILGLTSLNLGFLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLV 215
Query: 223 YVAGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAVIFMGDT 274
Y+ ++ + + + L+ + L +N P+ +F+GDT
Sbjct: 216 YLWRSVDPEATRFAHAFS-----LYLTIPLLATSLALLKYNWYPSRVFVGDT 262
>gnl|CDD|112744 pfam03945, Endotoxin_N, delta endotoxin, N-terminal domain. This
family contains insecticidal toxins produced by Bacillus
species of bacteria. During spore formation the bacteria
produce crystals of this protein. When an insect ingests
these proteins they are activated by proteolytic
cleavage. The N terminus is cleaved in all of the
proteins and a C terminal extension is cleaved in some
members. Once activated the endotoxin binds to the gut
epithelium and causes cell lysis leading to death. This
activated region of the delta endotoxin is composed of
three structural domains. The N-terminal helical domain
is involved in membrane insertion and pore formation.
The second and third domains are involved in receptor
binding.
Length = 224
Score = 30.7 bits (70), Expect = 0.66
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 225 AGNILLSHYLQVNFVPGVGELVVVISALIGAGIGFLWFNISPAV--IFMGDTGSL 277
G ++ L VPG G LV S L +G LW + P+V F+ L
Sbjct: 3 IGLSIVGTLLGAFGVPGGGFLVGFYSTL----LGLLWPSNDPSVWEAFLEQVEQL 53
>gnl|CDD|31175 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 28.2 bits (63), Expect = 3.2
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 134 RILIEFIIAILAVCALLFYSNSTLLGIETKTSIVFPFFRDIILDMGLFFIPFAAFVIVAT 193
RIL+ +I++I + L+ Y++ LLG + PF ++ + IP AA ++
Sbjct: 277 RILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPF----VIAIKNAGIPVAASIM--- 329
Query: 194 ANAVNLT 200
NAV LT
Sbjct: 330 -NAVILT 335
>gnl|CDD|133465 cd06855, GT_GPT_euk, UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase
(GPT) catalyzes the transfer of GlcNAc-1-P from
UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol.
The reaction is the first step in the assembly of
dolichol-linked oligosaccharide intermediates and is
essential for eukaryotic N-glycosylation. GPT activity
has been identified in all eukaryotic cells examined to
date. A series of six conserved motifs designated A
through F, ranging in length from 5 to 13 amino acid
residues, has been identified in this family. They have
been determined to be important for stable expression,
substrate binding, or catalytic activities.
Length = 283
Score = 27.2 bits (61), Expect = 7.0
Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 30/178 (16%)
Query: 103 LLLTLSFGLVGFYDDYIKITTGDAGGLSGKVRILIEFIIAILAVCALLFYSNSTLLGIET 162
LL +GF DD + L + ++++ ++ L+ Y +T GI
Sbjct: 66 LLSICCMTFLGFADDVLD--------LRWRHKLILPTFASLPL---LMVYYGNT--GITL 112
Query: 163 KTSIVFPFFRDIILDMGLFFIPFAAFVIVATANAVNLTDGLDGLAIVPVMIASVAFSFIA 222
+ P +I D+G+ + + + V N++N+ G++GL + ++ +++
Sbjct: 113 PIVPLRPLLGTLI-DLGILYYVYMILLAVFCTNSINIYAGINGLEVGQSLVIALS----- 166
Query: 223 YVAGNILLSHYLQVNFVPGVGELVVVISAL------IGAGIGFLWFNISPAVIFMGDT 274
ILL + L++N G L + +L I + L++N P+ +F+GDT
Sbjct: 167 -----ILLYNLLELNGSSGSMTLDAHLFSLYLLLPFIAVSLALLYYNWYPSKVFVGDT 219
>gnl|CDD|38816 KOG3610, KOG3610, KOG3610, Plexins (functional semaphorin
receptors) [Signal transduction mechanisms].
Length = 1025
Score = 27.2 bits (60), Expect = 7.7
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 329 PIHHHFEKKGWTENQIVIRFWI 350
I W N + +RFW+
Sbjct: 867 GIEDPDVIHIWKSNSLPLRFWV 888
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.332 0.148 0.439
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,613,499
Number of extensions: 272776
Number of successful extensions: 1427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1341
Number of HSP's successfully gapped: 251
Length of query: 366
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,210,882
Effective search space: 1141149022
Effective search space used: 1141149022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.2 bits)