RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781100|ref|YP_003065513.1|
phospho-N-acetylmuramoyl-pentapeptide-transferase [Candidatus
Liberibacter asiaticus str. psy62]
         (366 letters)



>2r11_A Carboxylesterase NP; 2632844, putative hydrolase,
          structural genomics, joint center for structural
          genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis}
          (A:)
          Length = 306

 Score = 27.9 bits (60), Expect = 1.8
 Identities = 6/47 (12%), Positives = 12/47 (25%)

Query: 48 RSLQEFRGQPVRVPNLPIHARKIDTPTMGGIIILMGLIGSSLLWADF 94
                +   +       H           +++L G + SS  W   
Sbjct: 40 LWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSSTXWYPN 86


>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase,
           structural genomics, seattle structural genomics center
           for infectious disease; 2.10A {Brucella melitensis} (A:)
          Length = 97

 Score = 26.7 bits (59), Expect = 4.8
 Identities = 4/27 (14%), Positives = 10/27 (37%)

Query: 119 IKITTGDAGGLSGKVRILIEFIIAILA 145
           + + T    G++     +   + AI  
Sbjct: 71  VTLATHSENGVTELDIKMARKMNAIAG 97


>1dk0_A HASA, heme-binding protein A; protein-heme complex, two heme
           insertions, transport protein; HET: HEM; 1.77A {Serratia
           marcescens} (A:)
          Length = 188

 Score = 26.3 bits (58), Expect = 6.5
 Identities = 10/43 (23%), Positives = 14/43 (32%)

Query: 250 SALIGAGIGFLWFNISPAVIFMGDTGSLALGAFIGGIAVSTKH 292
           +A +  G         PA    G   SL+ G  + G   S   
Sbjct: 65  TAFVAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTSPYS 107


>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A
           {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A* (A:)
          Length = 104

 Score = 26.3 bits (58), Expect = 6.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 119 IKITTGDAGGLSGKVRILIEFIIAILA 145
           ++++T DA GL+ K   L +F+     
Sbjct: 74  VELSTHDAAGLTEKDFALAKFMDDAAK 100


>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase;
           1.60A {Mus musculus} (A:)
          Length = 105

 Score = 25.6 bits (56), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 119 IKITTGDAGGLSGKVRILIEFIIAILA 145
           I +T+ D GGL+ +   L +FI    A
Sbjct: 77  ITLTSHDCGGLTKRDVKLAQFIEKAAA 103


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.332    0.148    0.439 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,792,861
Number of extensions: 124934
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 30
Length of query: 366
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 276
Effective length of database: 1,913,599
Effective search space: 528153324
Effective search space used: 528153324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.3 bits)