HHsearch alignment for GI: 254781101 and conserved domain: COG0770
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=769.01 Aligned_cols=450 Identities=39% Similarity=0.551 Sum_probs=416.2
Q ss_pred CCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 35678899872799952688714746774022237898889716887476888999998698899985521245544697
Q gi|254781101|r 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 (472)
Q Consensus 4 ~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~ 83 (472)
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~~v~r~~~~~~~~-~~ 79 (451)
T COG0770 2 LLTLDELADILGGALVGADP-VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAVLVARPVLPPAIP-LV 79 (451)
T ss_pred CCCHHHHHHHHCCCCCCCCC-CCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC-CC
T ss_conf 30089999971781136740-00106995246678885238716763564221889984597799992576786656-52
Q ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHH
Q ss_conf 28995998999999999998306993999830365420123346777752011222122110145741000123221444
Q gi|254781101|r 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 (472)
Q Consensus 84 ~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~ 163 (472)
T Consensus 80 -~~~V~d~~~al~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~~~~~e~~ 158 (451)
T COG0770 80 -VLLVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRLPADTEYA 158 (451)
T ss_pred -EEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHCCCCCCEE
T ss_conf -5875999999999999999736996899958997076999999998636807467876686544156897477766479
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 30156644332112122323220255531210123444578888654331037622101210134246899875201233
Q gi|254781101|r 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 (472)
Q Consensus 164 V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~ 243 (472)
T Consensus 159 VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~---~ 235 (451)
T COG0770 159 VLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKI---G 235 (451)
T ss_pred EEECCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC---C
T ss_conf 9986899777478884405898899838059998742889999999999981568786799878617778777635---7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 33322222222222223442113465100124565432212222222233332210356765101210345543114766
Q gi|254781101|r 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 (472)
Q Consensus 244 ~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~ 323 (472)
T Consensus 236 ~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~~ 315 (451)
T COG0770 236 NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKPV 315 (451)
T ss_pred CCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 87579976887775256778983885079998068337999457847689999999999998199999999999863788
Q ss_pred CCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 44331010003653113310002565321012577787411102687138851235417105899999999998649989
Q gi|254781101|r 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 (472)
Q Consensus 324 ~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~ 403 (472)
T Consensus 316 ~gR~~~~---~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~---~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~ 389 (451)
T COG0770 316 KGRLEVI---LLANGKTLIDDSYNANPDSMRAALDLLAALPGR---KGIAVLGDMLELGEESEELHEEVGEYAVEAGIDL 389 (451)
T ss_pred CCCCEEE---ECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 8663367---648981899737889989999999999637668---8579947766638548999999999998569509
Q ss_pred EEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9998803898998511379799978989999999984478989999771325489999999985
Q gi|254781101|r 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 (472)
Q Consensus 404 v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~ 467 (472)
T Consensus 390 v~~~G~~~~~i~~~~~~~--~~~f~~~~~l~~~l~~~l~~gd~vLvKgSr~~~le~vv~~l~~~ 451 (451)
T COG0770 390 VFLVGELSKAIAEALGNK--GIYFADKEELITSLKALLRKGDVVLVKGSRGMKLEKVVDALLGK 451 (451)
T ss_pred EEEECCCHHHHHHHCCCC--EEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 999762069999865777--58607779999999985677878999737646579999998319