HHsearch alignment for GI: 254781101 and conserved domain: COG0771
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=372.02 Aligned_cols=330 Identities=25% Similarity=0.264 Sum_probs=251.0
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 99983069939998303654201233467777520112221221101457410-00123221444301566443321121
Q gi|254781101|r 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFL 178 (472)
Q Consensus 100 ~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L 178 (472)
T Consensus 102 L~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGN----IG~p~l~~~~~~~~~d~~VlElSSfQ---L~~- 173 (448)
T COG0771 102 LFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGN----IGTPALELLEQAEPADVYVLELSSFQ---LET- 173 (448)
T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCC----CCCCHHHHHCCCCCCCEEEEECCCCC---CCC-
T ss_conf 8987448999899979996288999999999855998321351----67137876201578987999924555---165-
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--
Q ss_conf 223232202555312101234445788886543310376221012101342468998752012333332222222222--
Q gi|254781101|r 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-- 256 (472)
Q Consensus 179 ~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~a-- 256 (472)
T Consensus 174 ~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~---~~~~~~~fs~~~~~~~ 248 (448)
T COG0771 174 TSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEA---TKARVIWFSFGEPLAD 248 (448)
T ss_pred CCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHC---CCCEEEEEECCCCCCC
T ss_conf 76678557999448877865606999999999999838962--799837727776544303---6632688974664556
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 22234421134651001245654322122222222333322103567651012103455431147664433101000365
Q gi|254781101|r 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 (472)
Q Consensus 257 d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~ 336 (472)
T Consensus 249 ~~~~~~~~~~-------~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v---~~~ 318 (448)
T COG0771 249 GDYIYDGKLV-------FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFV---GEK 318 (448)
T ss_pred CCEEECCHHC-------CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEC
T ss_conf 6334340110-------353000334215875452499899999999983999899999997389998622798---861
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 31133100025653210125777874111026871388512354171058999999999986499899998803898998
Q gi|254781101|r 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 (472)
Q Consensus 337 ~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~ 416 (472)
T Consensus 319 ~gv~f~NDSKATN~~At~~AL~~~~-------~~v~lI~GG~-----~Kg~df~~L~~~~~~~-~~~~~~~G~~~~~i~~ 385 (448)
T COG0771 319 DGVLFINDSKATNVDATLAALSGFD-------GPVILIAGGD-----DKGADFSPLAEILAKV-IKKLVLIGEDAEKIAA 385 (448)
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCC-------CCEEEEECCC-----CCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHH
T ss_conf 9889960787888889999997189-------9779997777-----8888816889977415-5599994788899999
Q ss_pred HCCCCCC-EEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH
Q ss_conf 5113797-999789899999999844789899997---71---------3254899999999
Q gi|254781101|r 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472)
Q Consensus 417 ~~~~~~~-~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472)
T Consensus 386 ~l~~~~~~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~v~~l~ 447 (448)
T COG0771 386 ALKEAGPSLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKELVSELG 447 (448)
T ss_pred HHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 98752785361476999999999872589869976442164222379999999999999854