HHsearch alignment for GI: 254781101 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=369.81 Aligned_cols=326 Identities=20% Similarity=0.209 Sum_probs=239.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9939998303654201233467777520112221221101457410-001232214443015664433211212232322
Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472)
Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472)
T Consensus 122 ~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~~~~l~~~~~~d~~VlElSSfQ---L~~-~~~~~p~ 193 (476)
T PRK00141 122 PRTWLAVTGTNGKTTTTAMLAAMMQAGGFAAVAVGN----IGIPVSAALVAQNRIDVLVAELSSFQ---LHW-APTFTPD 193 (476)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCCHHHHHHHCCCCCCEEEEECCCCH---HCC-CCCCCCC
T ss_conf 776388968996798999999999837997289950----67246666525787758999778201---200-2236865
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 025553121012344457888865433103762210121013424689987520123333322222222222--223442
Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKW 263 (472)
Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad--~~~~~i 263 (472)
T Consensus 194 iaVilNIs~DHLD~h~s~e~Y~~aK~kI~~~----~~~vi~~Dd~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~ 266 (476)
T PRK00141 194 AGVVLNLAEDHIDWHGSMRDYALDKARVLTA----PVAVIGADDPYVVELTREADL---SGLIGFTLGEPAEGQVGVRAG 266 (476)
T ss_pred EEEEECCCHHHHHHHCCHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHCCC---CCEEEECCCCCCCCCEEEECC
T ss_conf 8987268878986626999999999987348----824997787899998874478---867985278755352447768
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE
Q ss_conf 11346510012456543221222222223333221035676510121034554311476644331010003653113310
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472)
T Consensus 267 ~~~~~~~~~~~~l---~~~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~~F~gl~HR~E~---v~~~~gV~fiN 340 (476)
T PRK00141 267 ELVDNAFGDNVVL---ASADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALAGFEVAGHRGQV---VAEHDGVHFID 340 (476)
T ss_pred EEEEEECCCCCEE---CCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEE---EEEECCEEEEC
T ss_conf 8998515775032---12432377653359999999999998499999999999856898861279---99989999981
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC--
Q ss_conf 002565321012577787411102687138851235417105899999999998649989999880389899851137--
Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 (472)
Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~-- 421 (472)
T Consensus 341 DSKaTN~~at~~AL~~~~--------~iilI~GG-----~~Kg~d~~~l~~~~~~-~vk~v~l~G~~~~~i~~~l~~~~~ 406 (476)
T PRK00141 341 NSKATNPHAADSALAGHE--------SVIWVAGG-----QLKGADIDELIATHGG-RIKAALVLGADRAEIVAAVKEHAP 406 (476)
T ss_pred CCCCCCHHHHHHHHHHCC--------CCEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHHHHCC
T ss_conf 798999899999997288--------73999447-----6577787999999863-310999976898999999985478
Q ss_pred -CCEEEE------CCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf -979997------89899999999844789899997---71---------325489999999985
Q gi|254781101|r 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 422 -~~~~~~------~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~~ 467 (472)
T Consensus 407 ~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLLSPacaSfD~f~nyeeRG~~F~~~V~~~~~~ 471 (476)
T PRK00141 407 DAPVTVTDKTDPEEAMREAVAAAFSLAEPGDSVVLAPAAASLDMYTGMGQRGDLFAHYIIGTIKG 471 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 88268861545788999999999973889898998945430205179999999999999999713