HHsearch alignment for GI: 254781101 and conserved domain: PRK00141

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=369.81  Aligned_cols=326  Identities=20%  Similarity=0.209  Sum_probs=239.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9939998303654201233467777520112221221101457410-001232214443015664433211212232322
Q gi|254781101|r  107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH  185 (472)
Q Consensus       107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~  185 (472)
T Consensus       122 ~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~~~~l~~~~~~d~~VlElSSfQ---L~~-~~~~~p~  193 (476)
T PRK00141        122 PRTWLAVTGTNGKTTTTAMLAAMMQAGGFAAVAVGN----IGIPVSAALVAQNRIDVLVAELSSFQ---LHW-APTFTPD  193 (476)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCCHHHHHHHCCCCCCEEEEECCCCH---HCC-CCCCCCC
T ss_conf             776388968996798999999999837997289950----67246666525787758999778201---200-2236865


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf             025553121012344457888865433103762210121013424689987520123333322222222222--223442
Q gi|254781101|r  186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKW  263 (472)
Q Consensus       186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad--~~~~~i  263 (472)
T Consensus       194 iaVilNIs~DHLD~h~s~e~Y~~aK~kI~~~----~~~vi~~Dd~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~  266 (476)
T PRK00141        194 AGVVLNLAEDHIDWHGSMRDYALDKARVLTA----PVAVIGADDPYVVELTREADL---SGLIGFTLGEPAEGQVGVRAG  266 (476)
T ss_pred             EEEEECCCHHHHHHHCCHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHCCC---CCEEEECCCCCCCCCEEEECC
T ss_conf             8987268878986626999999999987348----824997787899998874478---867985278755352447768


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE
Q ss_conf             11346510012456543221222222223333221035676510121034554311476644331010003653113310
Q gi|254781101|r  264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID  343 (472)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID  343 (472)
T Consensus       267 ~~~~~~~~~~~~l---~~~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~~F~gl~HR~E~---v~~~~gV~fiN  340 (476)
T PRK00141        267 ELVDNAFGDNVVL---ASADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALAGFEVAGHRGQV---VAEHDGVHFID  340 (476)
T ss_pred             EEEEEECCCCCEE---CCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEE---EEEECCEEEEC
T ss_conf             8998515775032---12432377653359999999999998499999999999856898861279---99989999981


Q ss_pred             ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC--
Q ss_conf             002565321012577787411102687138851235417105899999999998649989999880389899851137--
Q gi|254781101|r  344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--  421 (472)
Q Consensus       344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~--  421 (472)
T Consensus       341 DSKaTN~~at~~AL~~~~--------~iilI~GG-----~~Kg~d~~~l~~~~~~-~vk~v~l~G~~~~~i~~~l~~~~~  406 (476)
T PRK00141        341 NSKATNPHAADSALAGHE--------SVIWVAGG-----QLKGADIDELIATHGG-RIKAALVLGADRAEIVAAVKEHAP  406 (476)
T ss_pred             CCCCCCHHHHHHHHHHCC--------CCEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHHHHCC
T ss_conf             798999899999997288--------73999447-----6577787999999863-310999976898999999985478


Q ss_pred             -CCEEEE------CCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHHH
Q ss_conf             -979997------89899999999844789899997---71---------325489999999985
Q gi|254781101|r  422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEE  467 (472)
Q Consensus       422 -~~~~~~------~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~~  467 (472)
T Consensus       407 ~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLLSPacaSfD~f~nyeeRG~~F~~~V~~~~~~  471 (476)
T PRK00141        407 DAPVTVTDKTDPEEAMREAVAAAFSLAEPGDSVVLAPAAASLDMYTGMGQRGDLFAHYIIGTIKG  471 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             88268861545788999999999973889898998945430205179999999999999999713