HHsearch alignment for GI: 254781101 and conserved domain: PRK00421
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=403.92 Aligned_cols=369 Identities=27% Similarity=0.366 Sum_probs=275.3
Q ss_pred CCCEEEEECCCCCCC------CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 698899985521245------54469728995998999999999998306993999830365420123346777752011
Q gi|254781101|r 63 KGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 (472)
Q Consensus 63 ~Ga~~~i~~~~~~~~------~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~ 136 (472)
T Consensus 66 ~~~d~vV~Sp~I~~~~p~~~~a~~~gi~v~~~--~-e~l~~~---~---~~~~~IaVtGTnGKTTtT~ll~~il~~~g~~ 136 (459)
T PRK00421 66 KGADVVVVSSAIKPDNPELVAARELGIPVVRR--A-EMLAEL---M---RLRTSIAVAGTHGKTTTTSLLAHVLAEAGLD 136 (459)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEH--H-HHHHHH---H---HCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999998998599899999999879979889--9-999999---8---2596499977888611899999999976998
Q ss_pred --CCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf --222122110145741000123221444301566443321121223232202555312101234445788886543310
Q gi|254781101|r 137 --YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 (472)
Q Consensus 137 --~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~ 214 (472)
T Consensus 137 ~~~~iGg~~~~-~~~~---~~~-~~~~~~V~E~dE~d-~--sf--~~~~P~iavitNI~~DHLD~h~s~e~Y~~ak~~~~ 206 (459)
T PRK00421 137 PTFIIGGILNA-AGTN---ARL-GSSDYFVAEADESD-R--SF--LKLHPDIAVVTNIDADHLDYYGDFEDLKDAFQEFA 206 (459)
T ss_pred CEEEECCCCCC-CCCC---CCC-CCCCEEEEEECCCC-C--CH--HHCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf 74885753355-6654---525-88988999953541-4--36--44589899991798778656018999999999999
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 3762210121013424689987520123333322222222222223442113465100124565432-212222222233
Q gi|254781101|r 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293 (472)
Q Consensus 215 ~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~~~G~hnv 293 (472)
T Consensus 207 ~~~~~~g~~ViN~DD~~~~~l~~~~~~----~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~l~G~HNv 282 (459)
T PRK00421 207 HNLPFYGALVACGDDPELRELLPRVDR----PVITYGFSEDADFRAENIRQDGGGSHFDVLREGEDLGDFTLPLPGRHNV 282 (459)
T ss_pred HCCCCCCCEECCCCCHHHHHHHHHCCC----CCEEECCCCCCCEEEEEEEEECCCEEEEEEECCCEEEEEEECCCHHHHH
T ss_conf 719954721146879899998774388----6002356876666788899948923899983893788999568638899
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 33221035676510121034554311476644331010003653113310002565321012577787411102687138
Q gi|254781101|r 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 (472)
Q Consensus 294 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~ 373 (472)
T Consensus 283 ~NalAAia~a~~lGi~~e~i~~aL~~F~Gv~~R~E~v---~~~~gv~~idD-YAH~P~~i~a~l~alr~~~~--~~rii~ 356 (459)
T PRK00421 283 LNALAAIAVALELGIDDEAIRKALATFKGVKRRFEEK---GEVNGVVLIDD-YAHHPTEIKATLKAARQKYP--DKRIVA 356 (459)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EECCCEEEEEE-CCCCHHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 9999999999984999999999997535745027998---72288479973-56893899999999998768--996699
Q ss_pred EECCHHHCCC--CHHHHHHHHHHHHHHCCCCEEEEE-----------CCCHHHHHHHCCCC--CCEEEECCHHHHHHHHH
Q ss_conf 8512354171--058999999999986499899998-----------80389899851137--97999789899999999
Q gi|254781101|r 374 VLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQ 438 (472)
Q Consensus 374 VlG~m~ELG~--~~~~~h~~i~~~~~~~~~d~v~~~-----------G~~~~~~~~~~~~~--~~~~~~~~~e~a~~~l~ 438 (472)
T Consensus 357 vfqP----h~~sR~~~~~~e~a~~l~--~aD~vil~~iy~a~E~~~~g~~~~~i~~~i~~~~~~~~~~~~~~~~ai~~~~ 430 (459)
T PRK00421 357 VFQP----HRYSRTRDLFDEFAEVLS--DADEVILLDIYAAGEAPIPGVDSEDLARAIRKRGHVDVIFVPDVDDLAELLA 430 (459)
T ss_pred EECC----CCHHHHHHHHHHHHHHHH--CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 9867----420548999999999987--1999998887588887657889999999998608988799699999999999
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 844789899997713254899999999850
Q gi|254781101|r 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472)
Q Consensus 439 ~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472)
T Consensus 431 ~~a~~gDvVL~~GaGd--~~~~~~~l~~~l 458 (459)
T PRK00421 431 DVLQPGDLVLTMGAGD--ITKLARALLELL 458 (459)
T ss_pred HHCCCCCEEEEECCCC--HHHHHHHHHHHH
T ss_conf 8589989999979999--899999999965