HHsearch alignment for GI: 254781101 and conserved domain: PRK01710
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=388.29 Aligned_cols=322 Identities=20% Similarity=0.242 Sum_probs=245.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 69939998303654201233467777520112221221101457410-00123221444301566443321121223232
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
T Consensus 115 ~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGN----iG~p~~~~~~~~~~~d~~V~E~SS~q---l~~~-~-~~P 185 (458)
T PRK01710 115 CPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGN----IGTPLFSNIEEIKEEDKVVLELSSFQ---LMTM-D-VSP 185 (458)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHHHCCCCCEEEEEECHHH---HHHC-C-CCC
T ss_conf 7587799936898478999999999984997585166----26446888850578866999932155---5305-4-688
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 202555312101234445788886543310376221012101342468998752012333332222222222--222344
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRK 262 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~a--d~~~~~ 262 (472)
T Consensus 186 ~iaVitNi~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~i~n~Dd~~~~~~~~~~~~----~~~~f~~~~~~~~~~~~~~ 261 (458)
T PRK01710 186 EVAVVTNLSPNHLDVHKDMEEYVDAKKNIFKYQSSNDLLVLNKDNEITNGMEKEAKG----DVVKFSRKEKLKEGAYYKD 261 (458)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC----CEEEECCCCCCCCCCEEEC
T ss_conf 789983588536506541999999999999638877379993786999998776368----7899536654566736766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE
Q ss_conf 21134651001245654322122222222333322103567651012103455431147664433101000365311331
Q gi|254781101|r 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472)
Q Consensus 263 i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472)
T Consensus 262 -----~--~~~~~~~~~~~~~~l~l~G~HN~~N~lAA~aa~~-~gi~~e~i~~aL~~F~Gl~hR~E~v---~~~~gv~~i 330 (458)
T PRK01710 262 -----G--KLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN-DDVSIESMKKVATTFTGVEHRCEFV---REINGVKYY 330 (458)
T ss_pred -----C--EEEECCCEECCHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHHHHHEEE---EEECCEEEE
T ss_conf -----8--8998784011324216776544999999999998-1999999999987543534231465---787476798
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC--
Q ss_conf 000256532101257778741110268713885123541710589999999999864998999988038989985113--
Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 (472)
Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-- 420 (472)
T Consensus 331 NDSkaTn~~s~~~AL~~~~-------~~iilI~GG-----~~K~~d~~~l~~~~~~-~~k~vi~~G~~~~~i~~~l~~~~ 397 (458)
T PRK01710 331 NDSIASSPTRTLAGLNAFE-------KPVILIAGG-----YDKKIPFEPLAEEGYE-KIKILILMGDTKNKIKEAFKKVE 397 (458)
T ss_pred ECCCCCCHHHHHHHHHCCC-------CCEEEEECC-----CCCCCCHHHHHHHHHH-HCCEEEEECCCHHHHHHHHHHHH
T ss_conf 1576689899999997167-------772999646-----5667886999998763-05299997887799999998766
Q ss_pred -----CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf -----797999789899999999844789899997---71---------325489999999
Q gi|254781101|r 421 -----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 421 -----~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
T Consensus 398 ~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nfeeRG~~F~~~V~~L 458 (458)
T PRK01710 398 EEKGIKIPIVIVNSLEEAVKVAKNIAEKGDIITLSPACASFDMFPNFEIRGNKFKEIVNNL 458 (458)
T ss_pred HHCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 6316886523373599999999975889798998973311035269999999999999739