HHsearch alignment for GI: 254781101 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=391.97 Aligned_cols=355 Identities=21% Similarity=0.226 Sum_probs=257.1
Q ss_pred CCCEEEECCHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HC----C
Q ss_conf 9728995998999999999998-3069939998303654201233467777520112221221101457410-00----1
Q gi|254781101|r 82 SIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LA----R 155 (472)
Q Consensus 82 ~~~~i~v~d~~~al~~la~~~~-~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll----~ 155 (472)
T Consensus 97 gi~i~--~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GN----IG~p~l~~l~~~~~ 170 (501)
T PRK02006 97 GIPVW--GELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGN----ISPAALDKLAEAID 170 (501)
T ss_pred CCCEE--EHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHHHHHC
T ss_conf 99587--6899999887630222356874899938996687999999999976997465256----46102677876422
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHH
Q ss_conf 23221444301566443321121223232202555312101234445788886543310376221012101342468998
Q gi|254781101|r 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 (472)
Q Consensus 156 ~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l 235 (472)
T Consensus 171 ~~~~~d~~VlElSSfQ---Le~-~~~~~p~vaVilNIs~DHLD~h~s~e~Y~~aK~rif~---~~~~~V~n~DD~~~~~~ 243 (501)
T PRK02006 171 AAALPDVWVLELSSFQ---LET-THTFAPDAATVLNITQDHLDWHGSMAAYAAAKGRIFG---PATVRVLNRDDALVMAM 243 (501)
T ss_pred CCCCCCEEEEEECHHH---HCC-CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHH
T ss_conf 5776868999966467---575-6557967899907886564442379999999998723---48559994888889987
Q ss_pred HHHCCCCCCCCCCCCCCCCC---CCCCCCCCC---------CCCC-CCCCCC--------CCCC----CCC-CCCCCCCC
Q ss_conf 75201233333222222222---222234421---------1346-510012--------4565----432-21222222
Q gi|254781101|r 236 KAKSHALGIKTIYSFGKSKN---ADFQLRKWK---------QCSE-QSWMEV--------QLQG----KSM-EVVHHGIG 289 (472)
Q Consensus 236 ~~~~~~~~~~~i~~~g~~~~---ad~~~~~i~---------~~~~-~~~~~~--------~~~~----~~~-~~~l~~~G 289 (472)
T Consensus 244 ~~~~~~~--~~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~l~G 321 (501)
T PRK02006 244 APPAAAA--DAPVTFGLDEPAQDGDYGLLRENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLMPADALRIRG 321 (501)
T ss_pred HHHCCCC--CEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCC
T ss_conf 6650566--41688505775666540256237705787303221000000122102333444331011035520103567
Q ss_pred CCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 22333322103567651012103455431147664433101000365311331000256532101257778741110268
Q gi|254781101|r 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 (472)
Q Consensus 290 ~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~ 369 (472)
T Consensus 322 ~HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V---~~~~gv~~iNDSKaTN~~at~~Al~s~~-------~ 391 (501)
T PRK02006 322 LHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVI---ATIDDVDYVDDSKGTNVGATVAALDGLA-------Q 391 (501)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEE---EEECCEEEECCCCCCCHHHHHHHHHHCC-------C
T ss_conf 20699999999999985998789876631557876525899---9967889973787789899999997078-------9
Q ss_pred CCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC-CCEEEECCHHHHHHHHHHHCCCCCEEE
Q ss_conf 7138851235417105899999999998649989999880389899851137-979997898999999998447898999
Q gi|254781101|r 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448 (472)
Q Consensus 370 r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~-~~~~~~~~~e~a~~~l~~~~~~gdiVL 448 (472)
T Consensus 392 ~iilI~GG-----~~K~~d~~~L~~~~~~~-~k~vil~G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VL 465 (501)
T PRK02006 392 RVVLIAGG-----DGKGQDFSPLAAPVARW-ARAVVLIGRDAPAIRAALADTGVPLVDAATLEEAVRAAAELAQPGDAVL 465 (501)
T ss_pred CEEEEEEC-----CCCCCCHHHHHHHHHHH-CEEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 74999805-----77777979999999853-7099998989999999975179807985999999999997578979899
Q ss_pred EE---CC---------CHHHHHHHHHHHHHH
Q ss_conf 97---71---------325489999999985
Q gi|254781101|r 449 VK---SS---------NSCGFYRLINLLLEE 467 (472)
Q Consensus 449 iK---GS---------r~~~le~iv~~L~~~ 467 (472)
T Consensus 466 lSPacaSfD~F~nyeeRG~~F~~~V~~L~~~ 496 (501)
T PRK02006 466 LSPACASLDMFRNYAHRAQVFRAAVEELALD 496 (501)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8961103012069999999999999999985