HHsearch alignment for GI: 254781101 and conserved domain: PRK02472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=402.16 Aligned_cols=324 Identities=23% Similarity=0.212 Sum_probs=252.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHC-CCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 6993999830365420123346777752011222122110145741000-123221444301566443321121223232
Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll-~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
T Consensus 110 ~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~d~~VlE~SSfq---l~~-~~~~~p 181 (450)
T PRK02472 110 SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLAGN----IGYPASEVAQKATADDTLVTELSSFQ---LMG-VETFRP 181 (450)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHHHHCCCCCCEEEEEECCCC---HHH-HCCCCC
T ss_conf 1597899827999731999999999974997399941----67641245544789877999906551---410-022588
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 2025553121012344457888865433103762210121013424689987520123333322222222222-223442
Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKW 263 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad-~~~~~i 263 (472)
T Consensus 182 ~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~v~n~Dd~~~~~l~~~~~~----~~i~fs~~~~~~~~~~~~- 256 (450)
T PRK02472 182 HIAVITNIFEAHLDYHGTFENYVAAKWNIQKNQTEDDYLVLNADQEEVKELAKQTKA----TVVPFSTTKEVDGAYIKD- 256 (450)
T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC----EEEEECCCCCCCCCEEEC-
T ss_conf 689993688779766348999999999999559968779995887999999975797----089853675466517627-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE
Q ss_conf 11346510012456543221222222223333221035676510121034554311476644331010003653113310
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472)
T Consensus 257 ----~--~~~~~~~~~~~~~~l~l~G~HN~~NalaAia~a~~lGi~~~~i~~aL~~F~Gl~hRlE~v---~~~~Gv~~iN 327 (450)
T PRK02472 257 ----G--ALYFKGEKIMAADDIVLPGEHNLENILAAIAVAKLAGVSNEAIAEVLSTFTGVKHRLQYV---GTINGRKFYN 327 (450)
T ss_pred ----C--EEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EEECCEEEEE
T ss_conf ----8--799888456642323677553499999999999982998789999987448843379999---9974778982
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC-CC
Q ss_conf 00256532101257778741110268713885123541710589999999999864998999988038989985113-79
Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422 (472)
Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-~~ 422 (472)
T Consensus 328 DSKaTN~~at~~Al~~~~-------~~iilI~GG-----~~Kg~d~~~l~~~~~--~vk~v~~~G~~~~~i~~~~~~~~~ 393 (450)
T PRK02472 328 DSKATNILATQKALSGFN-------QPVILLAGG-----LDRGNEFDELIPYLK--NVKAMVVFGETAPKLARAANKAGI 393 (450)
T ss_pred CCCCCCHHHHHHHHHCCC-------CCEEEEEEC-----CCCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHCCC
T ss_conf 688889999999984589-------987999915-----556888799999973--768999968899999999973797
Q ss_pred CEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH
Q ss_conf 7999789899999999844789899997---71---------3254899999999
Q gi|254781101|r 423 HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472)
Q Consensus 423 ~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472)
T Consensus 394 ~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L~ 448 (450)
T PRK02472 394 TIVEADNVEDAVPKAYALSEPGDVILLSPACASWDQYKTFEERGDEFIDAVHELK 448 (450)
T ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1898799999999999858895989979733050120599999999999999747