HHsearch alignment for GI: 254781101 and conserved domain: PRK03806

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=378.19  Aligned_cols=321  Identities=23%  Similarity=0.325  Sum_probs=242.6

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             06993999830365420123346777752011222122110145741000123221444301566443321121223232
Q gi|254781101|r  105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP  184 (472)
Q Consensus       105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P  184 (472)
T Consensus       102 ~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~d~~VlElSSfQ---Le~-~~~~~p  172 (438)
T PRK03806        102 EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLPALML-LDQDCELYVLELSSFQ---LET-TSSLQA  172 (438)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHH-HCCCCCEEEEECCCCC---CCC-CCCCCC
T ss_conf             27998899948998489999999999865997567715----77527775-1376757998324533---002-354576


Q ss_pred             CEEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             20255531210123444-57888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r  185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW  263 (472)
Q Consensus       185 ~iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i  263 (472)
T Consensus       173 ~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~---~~~v~n~dD~~~~~~~~~~-----~~~i~fg~~~-~~~~~~~-  242 (438)
T PRK03806        173 VAATILNVTEDHMDRYPFGLQQYRAAKLRIYENA---KVCVVNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNR-  242 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEECCCCHHHHHHHHCC-----CCEEEEECCC-CCEEEEE-
T ss_conf             3788635888788776545999999999886279---6899947518779864035-----6558982356-6436760-


Q ss_pred             CCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEE
Q ss_conf             11346510012456543-2-212222222233332210356765101210345543114766443310100036531133
Q gi|254781101|r  264 KQCSEQSWMEVQLQGKS-M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL  341 (472)
Q Consensus       264 ~~~~~~~~~~~~~~~~~-~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~i  341 (472)
T Consensus       243 --~~~~~~~~--~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~v---~~~~gv~f  315 (438)
T PRK03806        243 --QQGETWLR--VKGEKVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLV---LEHNGVRW  315 (438)
T ss_pred             --CCCCEEEE--ECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE---EEECCEEE
T ss_conf             --57736897--378035401212666720498899999999983999899865520479999733899---99799999


Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC
Q ss_conf             10002565321012577787411102687138851235417105899999999998649989999880389899851137
Q gi|254781101|r  342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS  421 (472)
Q Consensus       342 IDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~  421 (472)
T Consensus       316 iNDSKaTN~~a~~~Al~s~~~-----~~~i~lI~GG~-----~K~~d~~~l~~~~~~~-~~~~~~~G~~~~~~~~~~~~~  384 (438)
T PRK03806        316 INDSKATNVGSTEAALNGLHV-----DGTLHLLLGGD-----GKSADFSPLARYLNGD-NIRLYCFGRDGAQLAALRPEV  384 (438)
T ss_pred             EECCCCCCHHHHHHHHHHCCC-----CCCEEEEECCC-----CCCCCHHHHHHHHHCC-CEEEEEECCCHHHHHHHCCCC
T ss_conf             989721589999999982620-----39779995477-----5557879999986126-569999777889999641220


Q ss_pred             CCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf             97999789899999999844789899997---71---------325489999999
Q gi|254781101|r  422 IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL  464 (472)
Q Consensus       422 ~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L  464 (472)
T Consensus       385 --~~~~~~l~~Av~~a~~~a~~gd~VLlSPacaSfD~f~nye~RG~~F~~lv~~L  437 (438)
T PRK03806        385 --AQLTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGDEFARLAKEL  437 (438)
T ss_pred             --CHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             --41540099999999986689998998974503014249999999999999962