HHsearch alignment for GI: 254781101 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=378.19 Aligned_cols=321 Identities=23% Similarity=0.325 Sum_probs=242.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 06993999830365420123346777752011222122110145741000123221444301566443321121223232
Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472)
Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472)
T Consensus 102 ~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~d~~VlElSSfQ---Le~-~~~~~p 172 (438)
T PRK03806 102 EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLPALML-LDQDCELYVLELSSFQ---LET-TSSLQA 172 (438)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHH-HCCCCCEEEEECCCCC---CCC-CCCCCC
T ss_conf 27998899948998489999999999865997567715----77527775-1376757998324533---002-354576
Q ss_pred CEEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20255531210123444-57888865433103762210121013424689987520123333322222222222223442
Q gi|254781101|r 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472)
Q Consensus 185 ~iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472)
T Consensus 173 ~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~---~~~v~n~dD~~~~~~~~~~-----~~~i~fg~~~-~~~~~~~- 242 (438)
T PRK03806 173 VAATILNVTEDHMDRYPFGLQQYRAAKLRIYENA---KVCVVNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNR- 242 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEECCCCHHHHHHHHCC-----CCEEEEECCC-CCEEEEE-
T ss_conf 3788635888788776545999999999886279---6899947518779864035-----6558982356-6436760-
Q ss_pred CCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEE
Q ss_conf 11346510012456543-2-212222222233332210356765101210345543114766443310100036531133
Q gi|254781101|r 264 KQCSEQSWMEVQLQGKS-M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 (472)
Q Consensus 264 ~~~~~~~~~~~~~~~~~-~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~i 341 (472)
T Consensus 243 --~~~~~~~~--~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~v---~~~~gv~f 315 (438)
T PRK03806 243 --QQGETWLR--VKGEKVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLV---LEHNGVRW 315 (438)
T ss_pred --CCCCEEEE--ECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE---EEECCEEE
T ss_conf --57736897--378035401212666720498899999999983999899865520479999733899---99799999
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC
Q ss_conf 10002565321012577787411102687138851235417105899999999998649989999880389899851137
Q gi|254781101|r 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 (472)
Q Consensus 342 IDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~ 421 (472)
T Consensus 316 iNDSKaTN~~a~~~Al~s~~~-----~~~i~lI~GG~-----~K~~d~~~l~~~~~~~-~~~~~~~G~~~~~~~~~~~~~ 384 (438)
T PRK03806 316 INDSKATNVGSTEAALNGLHV-----DGTLHLLLGGD-----GKSADFSPLARYLNGD-NIRLYCFGRDGAQLAALRPEV 384 (438)
T ss_pred EECCCCCCHHHHHHHHHHCCC-----CCCEEEEECCC-----CCCCCHHHHHHHHHCC-CEEEEEECCCHHHHHHHCCCC
T ss_conf 989721589999999982620-----39779995477-----5557879999986126-569999777889999641220
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 97999789899999999844789899997---71---------325489999999
Q gi|254781101|r 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 422 ~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
T Consensus 385 --~~~~~~l~~Av~~a~~~a~~gd~VLlSPacaSfD~f~nye~RG~~F~~lv~~L 437 (438)
T PRK03806 385 --AQLTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGDEFARLAKEL 437 (438)
T ss_pred --CHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf --41540099999999986689998998974503014249999999999999962