HHsearch alignment for GI: 254781101 and conserved domain: PRK03815
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=7e-45 Score=316.23 Aligned_cols=311 Identities=17% Similarity=0.182 Sum_probs=219.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 99999999830699399983036542012334677775201122212211014574100012322144430156644332
Q gi|254781101|r 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 (472)
Q Consensus 95 l~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~ge 174 (472)
T Consensus 78 ~seiel~~~--~~~~~I~ITGTNGKsTtt~li~~iL~~~g~--~~~GN----IG~Pl--~~~~~~~~~~VlElSSfQ--- 144 (401)
T PRK03815 78 ISEYDYFYS--FMPFSIWISGTNGKTTTTQMLTHLLEDFGA--VSGGN----IGTPL--AELDPNAKIWVLETSSFT--- 144 (401)
T ss_pred HHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHHHHCCC--CEECC----CCHHH--HHCCCCCCEEEEEECHHH---
T ss_conf 149999985--278748998477778999999999986698--13041----66438--862877887999934454---
Q ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 11212232322025553121012344457888865433103762210121013424689987520123333322222222
Q gi|254781101|r 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 (472)
Q Consensus 175 i~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~ 254 (472)
T Consensus 145 Le~-~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~~~~~~~~i~~~~~~~~~---------~~~~~i~~~~~~ 214 (401)
T PRK03815 145 LHY-TNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKLMNEGSVAILPKKYKETP---------TKAQKISYEDEE 214 (401)
T ss_pred CCC-CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC---------CCCEEEEECCHH
T ss_conf 066-7566876898836882052362689999999999996288776799722330476---------661799726627
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 22222344211346510012456543221222222223333221035676510121034554311476644331010003
Q gi|254781101|r 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 (472)
Q Consensus 255 ~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~ 334 (472)
T Consensus 215 ~--~~----------~~~~i--~~----~~i~~~~~~~~~~~-~a~--~~~~~~~~~~~~~~l~~F~gl~HRlE~v---~ 270 (401)
T PRK03815 215 D--LA----------EKFGI--DT----EKINFKGPFLLDAL-LAL--AVEKILFDENDYERLNAFVIEAHKLEEF---R 270 (401)
T ss_pred H--HH----------HHCCC--CH----HHCCCCHHHHHHHH-HHH--HHHHCCCCHHHHHHHHHCCCCCCCEEEE---E
T ss_conf 7--78----------76588--77----87056458999999-999--9985566355899998489988853899---9
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 65311331000256532101257778741110268713885123541710589999999999864998999988038989
Q gi|254781101|r 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 (472)
Q Consensus 335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~ 414 (472)
T Consensus 271 ~~~gv~fiNDSKATN~~At~~Al~~~~~------~~iilI~GG-----~~Kg~d~~~L~~~i~~~-~~~v~~~G~~~~~i 338 (401)
T PRK03815 271 DKQGRLWVDDSKATNIDATIQALKRYKD------KKIHLILGG-----DDKGVDLTPLFEELKNF-DIEIYAIGSNAEKI 338 (401)
T ss_pred EECCEEEECCCCCCCHHHHHHHHHHCCC------CCEEEEECC-----CCCCCCHHHHHHHHHHH-CEEEEEECCCHHHH
T ss_conf 8489899668878988999999983767------867999637-----65567879999997640-56999987899999
Q ss_pred HHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf 985113-797999789899999999844789899997---71---------325489999999
Q gi|254781101|r 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 415 ~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
T Consensus 339 ~~~~~~~~~~~~~~~~l~eAv~~a~~~a~~gdvVLLSPacASfD~FknyeeRG~~Fk~~V~~L 401 (401)
T PRK03815 339 LALAKEFNIKAQKCEFLEKAVNEIKKVLKQNEVALLSPAAASLDQFSSYAERGEKFKEFVLKL 401 (401)
T ss_pred HHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 999875698469828699999999985789798998974403002069999999999999739