HHsearch alignment for GI: 254781101 and conserved domain: PRK03815

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=7e-45  Score=316.23  Aligned_cols=311  Identities=17%  Similarity=0.182  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             99999999830699399983036542012334677775201122212211014574100012322144430156644332
Q gi|254781101|r   95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE  174 (472)
Q Consensus        95 l~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~ge  174 (472)
T Consensus        78 ~seiel~~~--~~~~~I~ITGTNGKsTtt~li~~iL~~~g~--~~~GN----IG~Pl--~~~~~~~~~~VlElSSfQ---  144 (401)
T PRK03815         78 ISEYDYFYS--FMPFSIWISGTNGKTTTTQMLTHLLEDFGA--VSGGN----IGTPL--AELDPNAKIWVLETSSFT---  144 (401)
T ss_pred             HHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHHHHCCC--CEECC----CCHHH--HHCCCCCCEEEEEECHHH---
T ss_conf             149999985--278748998477778999999999986698--13041----66438--862877887999934454---


Q ss_pred             CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             11212232322025553121012344457888865433103762210121013424689987520123333322222222
Q gi|254781101|r  175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK  254 (472)
Q Consensus       175 i~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~  254 (472)
T Consensus       145 Le~-~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~~~~~~~~i~~~~~~~~~---------~~~~~i~~~~~~  214 (401)
T PRK03815        145 LHY-TNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKLMNEGSVAILPKKYKETP---------TKAQKISYEDEE  214 (401)
T ss_pred             CCC-CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC---------CCCEEEEECCHH
T ss_conf             066-7566876898836882052362689999999999996288776799722330476---------661799726627


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf             22222344211346510012456543221222222223333221035676510121034554311476644331010003
Q gi|254781101|r  255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL  334 (472)
Q Consensus       255 ~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~  334 (472)
T Consensus       215 ~--~~----------~~~~i--~~----~~i~~~~~~~~~~~-~a~--~~~~~~~~~~~~~~l~~F~gl~HRlE~v---~  270 (401)
T PRK03815        215 D--LA----------EKFGI--DT----EKINFKGPFLLDAL-LAL--AVEKILFDENDYERLNAFVIEAHKLEEF---R  270 (401)
T ss_pred             H--HH----------HHCCC--CH----HHCCCCHHHHHHHH-HHH--HHHHCCCCHHHHHHHHHCCCCCCCEEEE---E
T ss_conf             7--78----------76588--77----87056458999999-999--9985566355899998489988853899---9


Q ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf             65311331000256532101257778741110268713885123541710589999999999864998999988038989
Q gi|254781101|r  335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL  414 (472)
Q Consensus       335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~  414 (472)
T Consensus       271 ~~~gv~fiNDSKATN~~At~~Al~~~~~------~~iilI~GG-----~~Kg~d~~~L~~~i~~~-~~~v~~~G~~~~~i  338 (401)
T PRK03815        271 DKQGRLWVDDSKATNIDATIQALKRYKD------KKIHLILGG-----DDKGVDLTPLFEELKNF-DIEIYAIGSNAEKI  338 (401)
T ss_pred             EECCEEEECCCCCCCHHHHHHHHHHCCC------CCEEEEECC-----CCCCCCHHHHHHHHHHH-CEEEEEECCCHHHH
T ss_conf             8489899668878988999999983767------867999637-----65567879999997640-56999987899999


Q ss_pred             HHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf             985113-797999789899999999844789899997---71---------325489999999
Q gi|254781101|r  415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL  464 (472)
Q Consensus       415 ~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L  464 (472)
T Consensus       339 ~~~~~~~~~~~~~~~~l~eAv~~a~~~a~~gdvVLLSPacASfD~FknyeeRG~~Fk~~V~~L  401 (401)
T PRK03815        339 LALAKEFNIKAQKCEFLEKAVNEIKKVLKQNEVALLSPAAASLDQFSSYAERGEKFKEFVLKL  401 (401)
T ss_pred             HHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             999875698469828699999999985789798998974403002069999999999999739