HHsearch alignment for GI: 254781101 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=389.50 Aligned_cols=324 Identities=23% Similarity=0.284 Sum_probs=250.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCC---CCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3069939998303654201233467777520112221221101457410001---2322144430156644332112122
Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTH 180 (472)
Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~---~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472)
T Consensus 106 ~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~~~d~~VlElSSfq---l~~-~~ 177 (445)
T PRK04308 106 NRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGN----IGTPVLEAELQREGKKADVWVLELSSFQ---LEN-TE 177 (445)
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHHHHHHCCCCCCEEEEEEECCC---CCC-CC
T ss_conf 416995799948998377999999999975996299850----3752111144432787867999960334---466-55
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32322025553121012344457888865433103762210121013424689987520123333322222222222223
Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 (472)
Q Consensus 181 i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~ 260 (472)
T Consensus 178 ~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~---~~~~~vln~dd~~~~~~~~~~-----~~v~~~~~~~~~d~~~ 249 (445)
T PRK04308 178 SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWL 249 (445)
T ss_pred CCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCC---CCCEEEECCCCHHHHHHHHCC-----CCEEEEECCCCCCEEE
T ss_conf 43763899858985675453599999999997445---797799938719999998669-----9569981376563689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEE
Q ss_conf 44211346510012456543221222222223333221035676510121034554311476644331010003653113
Q gi|254781101|r 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 (472)
Q Consensus 261 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~ 340 (472)
T Consensus 250 ~~~-----~~~~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~hR~E~v---~~~~GV~ 321 (445)
T PRK04308 250 ERE-----TGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKI---GEKNGVV 321 (445)
T ss_pred ECC-----CCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEE
T ss_conf 616-----63797468114543025667654798899999999982998899999987579999862899---8648988
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC
Q ss_conf 31000256532101257778741110268713885123541710589999999999864998999988038989985113
Q gi|254781101|r 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 (472)
Q Consensus 341 iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~ 420 (472)
T Consensus 322 ~iNDSKaTn~~at~~Al~~~~-------~~i~lI~G-----G~~Kg~d~~~l~~~~~~~-~~~v~~~G~~~~~i~~~l~~ 388 (445)
T PRK04308 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILG-----GMGKGQDFTPLRDALAGK-AKGVFLIGVDAPQIRRDLDG 388 (445)
T ss_pred EEECCCCCCHHHHHHHHHHCC-------CCEEEEEC-----CCCCCCCHHHHHHHHHHH-CEEEEEECCCHHHHHHHHHH
T ss_conf 980798888899999998277-------97799976-----766777869999998752-56999989799999998863
Q ss_pred -CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf -797999789899999999844789899997---71---------325489999999
Q gi|254781101|r 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472)
Q Consensus 421 -~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472)
T Consensus 389 ~~~~~~~~~~l~~Av~~a~~~a~~g~~VLlSPa~aSfD~f~nye~RG~~F~~~v~~L 445 (445)
T PRK04308 389 CGLNLTDCATLEEAVQTAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL 445 (445)
T ss_pred CCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 798558768799999999974889898998973404013079999999999999739