HHsearch alignment for GI: 254781101 and conserved domain: PRK04308

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=389.50  Aligned_cols=324  Identities=23%  Similarity=0.284  Sum_probs=250.7

Q ss_pred             HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCC---CCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             3069939998303654201233467777520112221221101457410001---2322144430156644332112122
Q gi|254781101|r  104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTH  180 (472)
Q Consensus       104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~---~~~~~~~~V~E~g~~~~gei~~L~~  180 (472)
T Consensus       106 ~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~~~d~~VlElSSfq---l~~-~~  177 (445)
T PRK04308        106 NRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGN----IGTPVLEAELQREGKKADVWVLELSSFQ---LEN-TE  177 (445)
T ss_pred             HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHHHHHHCCCCCCEEEEEEECCC---CCC-CC
T ss_conf             416995799948998377999999999975996299850----3752111144432787867999960334---466-55


Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32322025553121012344457888865433103762210121013424689987520123333322222222222223
Q gi|254781101|r  181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL  260 (472)
Q Consensus       181 i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~  260 (472)
T Consensus       178 ~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~---~~~~~vln~dd~~~~~~~~~~-----~~v~~~~~~~~~d~~~  249 (445)
T PRK04308        178 SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWL  249 (445)
T ss_pred             CCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCC---CCCEEEECCCCHHHHHHHHCC-----CCEEEEECCCCCCEEE
T ss_conf             43763899858985675453599999999997445---797799938719999998669-----9569981376563689


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEE
Q ss_conf             44211346510012456543221222222223333221035676510121034554311476644331010003653113
Q gi|254781101|r  261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT  340 (472)
Q Consensus       261 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~  340 (472)
T Consensus       250 ~~~-----~~~~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~hR~E~v---~~~~GV~  321 (445)
T PRK04308        250 ERE-----TGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKI---GEKNGVV  321 (445)
T ss_pred             ECC-----CCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEE
T ss_conf             616-----63797468114543025667654798899999999982998899999987579999862899---8648988


Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC
Q ss_conf             31000256532101257778741110268713885123541710589999999999864998999988038989985113
Q gi|254781101|r  341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR  420 (472)
Q Consensus       341 iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~  420 (472)
T Consensus       322 ~iNDSKaTn~~at~~Al~~~~-------~~i~lI~G-----G~~Kg~d~~~l~~~~~~~-~~~v~~~G~~~~~i~~~l~~  388 (445)
T PRK04308        322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILG-----GMGKGQDFTPLRDALAGK-AKGVFLIGVDAPQIRRDLDG  388 (445)
T ss_pred             EEECCCCCCHHHHHHHHHHCC-------CCEEEEEC-----CCCCCCCHHHHHHHHHHH-CEEEEEECCCHHHHHHHHHH
T ss_conf             980798888899999998277-------97799976-----766777869999998752-56999989799999998863


Q ss_pred             -CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH
Q ss_conf             -797999789899999999844789899997---71---------325489999999
Q gi|254781101|r  421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL  464 (472)
Q Consensus       421 -~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L  464 (472)
T Consensus       389 ~~~~~~~~~~l~~Av~~a~~~a~~g~~VLlSPa~aSfD~f~nye~RG~~F~~~v~~L  445 (445)
T PRK04308        389 CGLNLTDCATLEEAVQTAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL  445 (445)
T ss_pred             CCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             798558768799999999974889898998973404013079999999999999739