HHsearch alignment for GI: 254781101 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=592.53 Aligned_cols=416 Identities=24% Similarity=0.312 Sum_probs=348.1
Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 71474677402223789888971688747688899999869889998552124554469728995998999999999998
Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472)
Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472)
T Consensus 26 ~~~~~~it~DSR~V~~G~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~e~~~~~~-~~~~~~~i~V~d~r~al~~la~~fy 104 (953)
T PRK11929 26 VAATADLRLDSREVAPGDVFVACRGGASDGRAFIDQALARGAAVVIYEAEGAPV-APAGCLALPVADLRKALGELADEWY 104 (953)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 776455656654179999899945287788999999998699799991664444-6789719997989999999999986
Q ss_pred HCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC------CCCH------H----CCC-CCCCHHHH
Q ss_conf 306--993999830365420123346777752011222122110145------7410------0----012-32214443
Q gi|254781101|r 104 LRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------VPLT------L----ARM-PVDVDFGI 164 (472)
Q Consensus 104 ~~~--~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iG------vplt------l----l~~-~~~~~~~V 164 (472)
T Consensus 105 ~~ps~~l~vigVTGTNGKTTt~~~i~~il~~~g~~~~~iGTlg~~~~~~~~~~~~~TTP~~~~l~~~l~~~~~~g~~~~v 184 (953)
T PRK11929 105 GKPSQDLSVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSIGTLGARLPDGQSLGGSLTTPDVITLHRLLARMRAAGADAVA 184 (953)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 49675887899979997999999999999867998899832454058764467899994899999999999976997999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 01566443321121223232202555312101234445788886543310376221012101342468998752012333
Q gi|254781101|r 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 (472)
Q Consensus 165 ~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~ 244 (472)
T Consensus 185 mEvS-SHgL~q~Rv~g-i~fdvaifTNls~DHLDyH~tme~Y~~aK~~LF~~l~~~~~aViN~Dd~~~~~l~~~~~~~-- 260 (953)
T PRK11929 185 MEAS-SHGLEQGRLDG-IRFAVAGFTNLTRDHLDYHGTMEDYEQAKAALFEQWPPLGAAVINADDPAGERLLASLPAA-- 260 (953)
T ss_pred EEEC-HHHHHHHHHCC-CCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCC--
T ss_conf 9833-06776434208-7878899947976786654899999999999998741086699979888899999871278--
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 3322222-222222223442113465100124565432212222222233332210356765101210345543114766
Q gi|254781101|r 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 (472)
Q Consensus 245 ~~i~~~g-~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~ 323 (472)
T Consensus 261 -~~~~~~~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~~~i~~~l~~~~~v 339 (953)
T PRK11929 261 -LLTGYALQGSPADVHAYDLQATAHGQVFTLALPDGEAQIVTGLLGRHNISNLLLVAGALSKLGWPLPQIARELAAVSPV 339 (953)
T ss_pred -CEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf -5899933678774899999982898689999789279998068631249999999999998399999999988617998
Q ss_pred CCCCCCCEECCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 443310100036-5311331000256532101257778741110268713885123541710589999999999864998
Q gi|254781101|r 324 EGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472)
Q Consensus 324 ~GR~~~~~~~~~-~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472)
T Consensus 340 pGRmE~v~~~~~~~~~~viVD--YAHTpdAl~~~L~~lr~~~-~~~~rli~VfG----cgGdRD~~KRp~Mg~iA~~~aD 412 (953)
T PRK11929 340 DGRLERVGPTASAQGPLVVVD--YAHTPDALARALTALRPVA-EANGRLVCVFG----CGGNRDKGKRPEMGRIAAELAD 412 (953)
T ss_pred CCCEEEEECCCCCCCCEEEEE--CCCCHHHHHHHHHHHHHHH-CCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCC
T ss_conf 887599615666789669998--6789899999999999761-46980999989----8787761034899999998499
Q ss_pred EEEEECC-----CHHHHHH----HCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE--ECC
Q ss_conf 9999880-----3898998----511379799978989999999984478989999--771
Q gi|254781101|r 403 HVWLSGF-----HVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 (472)
Q Consensus 403 ~v~~~G~-----~~~~~~~----~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLi--KGS 452 (472)
T Consensus 413 ~viiT~DNPR~Edp~~I~~dI~~g~~~~~~~~~i~dR~~AI~~ai~~a~~~D~vliaGKGh 473 (953)
T PRK11929 413 RVIVTSDNPRDEAPEDIIDQILAGIPAGARALRQSDRALAIMQAIWMAKPGDVILLAGKGH 473 (953)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8998689989999999999998565668866997799999999998479999899987686