HHsearch alignment for GI: 254781101 and conserved domain: TIGR02068
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=100.00 E-value=2e-44 Score=313.29 Aligned_cols=436 Identities=23% Similarity=0.291 Sum_probs=283.2
Q ss_pred CHHHHH-HHHCCEEEC-CCCCCEEEEEEEECCCC--------------CCCCEEEECC--------------CCCCCHHH
Q ss_conf 678899-872799952-68871474677402223--------------7898889716--------------88747688
Q gi|254781101|r 6 TFHDLL-QAIQGHSIG-IVPQGFVNGISIDSRSI--------------APQEAFFAIK--------------GPHYDGHD 55 (472)
Q Consensus 6 ~~~~l~-~~~~g~~~~-~~~~~~i~~i~~dSr~v--------------~~g~lFval~--------------g~~~DGh~ 55 (472)
T Consensus 334 Ti~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~~~~L~kqG~~ldsVp~kG~~-V~Lr~~ANLSTGG~A~DrTDeiHP~~ 412 (876)
T TIGR02068 334 TIEELIGEQINKDPLRGDGHDKPLTKIRLDSVAKLVLAKQGLTLDSVPAKGRI-VYLRATANLSTGGVAIDRTDEIHPEN 412 (876)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHCCCE-EEEECCCCCCCCCEEEECCCCCCHHH
T ss_conf 07664057646777888866778883433079999998549751154540978-88632477445873162257538458
Q ss_pred HHHHHHHCCCEEE--------EECCCCCCCCCCCCCCEEEECC-HHHHH---------HHHHHHH-------HHCCCCCE
Q ss_conf 8999998698899--------9855212455446972899599-89999---------9999999-------83069939
Q gi|254781101|r 56 FILHAVQKGAGLV--------VVNTDMVASIGSLSIPVFGVDD-VLGAL---------NKLAVAA-------RLRSKATI 110 (472)
Q Consensus 56 ~i~~A~~~Ga~~~--------i~~~~~~~~~~~~~~~~i~v~d-~~~al---------~~la~~~-------~~~~~~~v 110 (472)
T Consensus 413 -~~~a~-~aAk~iGLDiaG~D~v~~di~~PL~~~~G~iVEVNAaPGlrMH~~PS~G~pR~Va~Ai~d~LFP~~~~grIPi 490 (876)
T TIGR02068 413 -IAIAV-RAAKIIGLDIAGVDVVTEDISKPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVAKAIVDMLFPEEDDGRIPI 490 (876)
T ss_pred -HHHHH-HHHHEEEEEECCEEECCCCCCCCHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEE
T ss_conf -99998-7520000012122200310003745459729998567663444677774698710268752288878983448
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC---CHHHHHCCC----C---CCCHHCC--CCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 9983036542012334677775201122---212211014----5---7410001--23221444301566443321121
Q gi|254781101|r 111 IAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHI----G---VPLTLAR--MPVDVDFGIFELGMSHLGEIRFL 178 (472)
Q Consensus 111 I~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~gn~Nn~i----G---vpltll~--~~~~~~~~V~E~g~~~~gei~~L 178 (472)
T Consensus 491 V~vTGTNGKTt~~RL~Ahil~~~G~~vG~T~tDG~Yi~~~~v~~GDntGP~SAr~~L~d~~VdaAVLEta---rGGiLR~ 567 (876)
T TIGR02068 491 VAVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKKLVEKGDNTGPKSARRILADPTVDAAVLETA---RGGILRE 567 (876)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCEEEECCCCCCHHHHHHCCCCCCEEEEEEECC---CCCCCCC
T ss_conf 8872689835578899999985698276420376775576662478987157301227888018998627---8722066
Q ss_pred -CCCCCCCEEEEEEEC-CCHHHHHH--HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf -223232202555312-10123444--57888865433103762210121013424689987520123333322222222
Q gi|254781101|r 179 -THLVRPHIAVITTIA-PAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 (472)
Q Consensus 179 -~~i~~P~iaiiTNI~-~dHld~~~--s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~ 254 (472)
T Consensus 568 GLafD~c~VGvVtNi~~~DHLG~~dInt~e~La~Vk~vv~e~V~pDG~AVLNA~DP~va~mA~~~~G----~i~YF~~~~ 643 (876)
T TIGR02068 568 GLAFDRCDVGVVTNIADGDHLGLGDINTIEDLADVKRVVVEVVKPDGYAVLNADDPMVAAMAEKCKG----KIAYFSMDP 643 (876)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCCCEEECCCCCHHHHHHHHCCC----CEEEEECCC
T ss_conf 5010321416898337766357886004788875101267888589827864788557999842896----189862186
Q ss_pred CCCCCCCC-----CCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 22222344-----2113465100124565--------4322122222222333322103567651012103455431147
Q gi|254781101|r 255 NADFQLRK-----WKQCSEQSWMEVQLQG--------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 (472)
Q Consensus 255 ~ad~~~~~-----i~~~~~~~~~~~~~~~--------~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~ 321 (472)
T Consensus 644 ~~~~~~~H~~~G~~avy~~~G~ivia~G~~~~~~~~~~~iPlT~GG~~~F~ieN~LAA~aAA~~~~v~ie~Ir~G~~tF~ 723 (876)
T TIGR02068 644 NNPTVAKHIAKGGRAVYYENGYIVIAKGGAEVAIARIAEIPLTMGGRVAFQIENALAAVAAAWALGVDIELIRAGIRTFK 723 (876)
T ss_pred CHHHHHHHHHCCCEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 25899999855989999867879997478322678997288675771578888999999998534898999998987330
Q ss_pred ----CCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHH
Q ss_conf ----6644331010003653113310002565321012577787411102687138851235417105899999999998
Q gi|254781101|r 322 ----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 (472)
Q Consensus 322 ----~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~ 397 (472)
T Consensus 724 ~d~~~~PGrfnLFn~~---~~~~lvD--Y~HNp~~~~av~~a~~~~~---A~rr~gV~ggp---GDR~De~l~~~G~~~g 792 (876)
T TIGR02068 724 ADAAQAPGRFNLFNLG---GAHVLVD--YGHNPAAIEAVVEAIRNLP---ARRRIGVIGGP---GDRRDEDLVKLGEILG 792 (876)
T ss_pred CHHHCCCCEEEEEECC---CCEEEEE--CCCCHHHHHHHHHHHHHCC---CCCEEEEEECC---CCCCHHHHHHHHHHHH
T ss_conf 1010689503222258---8289996--5779789999999996178---78478998078---7786588999999975
Q ss_pred HCCCCEEEEEC-----------CCHHHHHHHCCCCC-CEEEEC---CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 64998999988-----------03898998511379-799978---9899999999844789899997713254899999
Q gi|254781101|r 398 LYNISHVWLSG-----------FHVLALKDALPRSI-HVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 (472)
Q Consensus 398 ~~~~d~v~~~G-----------~~~~~~~~~~~~~~-~~~~~~---~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~ 462 (472)
T Consensus 793 ~-~FD~i~~keD~~~rGkR~~G~a~~Ll~~G~~~~~~~~~~i~~i~de~~Ai~~~L~~~~~GdL~vi~~e---~~~~a~~ 868 (876)
T TIGR02068 793 G-AFDQIILKEDDDLRGKRARGEAAALLRQGLIQAAMRKAAIEEILDETEAIKAALDSLEAGDLVVILPE---SVERAIK 868 (876)
T ss_pred H-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHH
T ss_conf 4-06879996274535788873589999963530577656799998899999999842146886999702---1003566
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254781101|r 463 LLLE 466 (472)
Q Consensus 463 ~L~~ 466 (472)
T Consensus 869 ~i~~ 872 (876)
T TIGR02068 869 LIEE 872 (876)
T ss_pred HHHH
T ss_conf 7665